Metagenome, metatranscriptome, and metaproteome approaches unraveled compositions and functional relationships of microbial communities residing in biogas plants
Hassa J, Maus I, Off S, Pühler A, Scherer P, Klocke M, Schlüter A (2018)
Applied Microbiology and Biotechnology 102(12): 5045-5063.
Zeitschriftenaufsatz
| Veröffentlicht | Englisch
Download
Es wurden keine Dateien hochgeladen. Nur Publikationsnachweis!
Autor*in
Hassa, JuliaUniBi
;
Maus, IrenaUniBi;
Off, Sandra;
Pühler, AlfredUniBi
;
Scherer, Paul;
Klocke, Michael;
Schlüter, AndreasUniBi ![](https://pub.uni-bielefeld.de/images/icon_orcid.png)
![](https://pub.uni-bielefeld.de/images/icon_orcid.png)
![](https://pub.uni-bielefeld.de/images/icon_orcid.png)
![](https://pub.uni-bielefeld.de/images/icon_orcid.png)
Einrichtung
Erscheinungsjahr
2018
Zeitschriftentitel
Applied Microbiology and Biotechnology
Band
102
Ausgabe
12
Seite(n)
5045-5063
Urheberrecht / Lizenzen
ISSN
0175-7598
eISSN
1432-0614
Page URI
https://pub.uni-bielefeld.de/record/2920170
Zitieren
Hassa J, Maus I, Off S, et al. Metagenome, metatranscriptome, and metaproteome approaches unraveled compositions and functional relationships of microbial communities residing in biogas plants. Applied Microbiology and Biotechnology. 2018;102(12):5045-5063.
Hassa, J., Maus, I., Off, S., Pühler, A., Scherer, P., Klocke, M., & Schlüter, A. (2018). Metagenome, metatranscriptome, and metaproteome approaches unraveled compositions and functional relationships of microbial communities residing in biogas plants. Applied Microbiology and Biotechnology, 102(12), 5045-5063. doi:10.1007/s00253-018-8976-7
Hassa, Julia, Maus, Irena, Off, Sandra, Pühler, Alfred, Scherer, Paul, Klocke, Michael, and Schlüter, Andreas. 2018. “Metagenome, metatranscriptome, and metaproteome approaches unraveled compositions and functional relationships of microbial communities residing in biogas plants”. Applied Microbiology and Biotechnology 102 (12): 5045-5063.
Hassa, J., Maus, I., Off, S., Pühler, A., Scherer, P., Klocke, M., and Schlüter, A. (2018). Metagenome, metatranscriptome, and metaproteome approaches unraveled compositions and functional relationships of microbial communities residing in biogas plants. Applied Microbiology and Biotechnology 102, 5045-5063.
Hassa, J., et al., 2018. Metagenome, metatranscriptome, and metaproteome approaches unraveled compositions and functional relationships of microbial communities residing in biogas plants. Applied Microbiology and Biotechnology, 102(12), p 5045-5063.
J. Hassa, et al., “Metagenome, metatranscriptome, and metaproteome approaches unraveled compositions and functional relationships of microbial communities residing in biogas plants”, Applied Microbiology and Biotechnology, vol. 102, 2018, pp. 5045-5063.
Hassa, J., Maus, I., Off, S., Pühler, A., Scherer, P., Klocke, M., Schlüter, A.: Metagenome, metatranscriptome, and metaproteome approaches unraveled compositions and functional relationships of microbial communities residing in biogas plants. Applied Microbiology and Biotechnology. 102, 5045-5063 (2018).
Hassa, Julia, Maus, Irena, Off, Sandra, Pühler, Alfred, Scherer, Paul, Klocke, Michael, and Schlüter, Andreas. “Metagenome, metatranscriptome, and metaproteome approaches unraveled compositions and functional relationships of microbial communities residing in biogas plants”. Applied Microbiology and Biotechnology 102.12 (2018): 5045-5063.
Daten bereitgestellt von European Bioinformatics Institute (EBI)
2 Zitationen in Europe PMC
Daten bereitgestellt von Europe PubMed Central.
Effect of Long-Term Farming Practices on Agricultural Soil Microbiome Members Represented by Metagenomically Assembled Genomes (MAGs) and Their Predicted Plant-Beneficial Genes.
Nelkner J, Henke C, Lin TW, Pätzold W, Hassa J, Jaenicke S, Grosch R, Pühler A, Sczyrba A, Schlüter A., Genes (Basel) 10(6), 2019
PMID: 31163637
Nelkner J, Henke C, Lin TW, Pätzold W, Hassa J, Jaenicke S, Grosch R, Pühler A, Sczyrba A, Schlüter A., Genes (Basel) 10(6), 2019
PMID: 31163637
Comparative analysis of deep sequenced methanogenic communities: identification of microorganisms responsible for methane production.
Pyzik A, Ciezkowska M, Krawczyk PS, Sobczak A, Drewniak L, Dziembowski A, Lipinski L., Microb Cell Fact 17(1), 2018
PMID: 30572955
Pyzik A, Ciezkowska M, Krawczyk PS, Sobczak A, Drewniak L, Dziembowski A, Lipinski L., Microb Cell Fact 17(1), 2018
PMID: 30572955
161 References
Daten bereitgestellt von Europe PubMed Central.
Eubacteria and archaea communities in seven mesophile anaerobic digester plants in Germany.
Abendroth C, Vilanova C, Gunther T, Luschnig O, Porcar M., Biotechnol Biofuels 8(), 2015
PMID: 26097504
Abendroth C, Vilanova C, Gunther T, Luschnig O, Porcar M., Biotechnol Biofuels 8(), 2015
PMID: 26097504
From grass to gas: microbiome dynamics of grass biomass acidification under mesophilic and thermophilic temperatures.
Abendroth C, Simeonov C, Pereto J, Antunez O, Gavidia R, Luschnig O, Porcar M., Biotechnol Biofuels 10(), 2017
PMID: 28690680
Abendroth C, Simeonov C, Pereto J, Antunez O, Gavidia R, Luschnig O, Porcar M., Biotechnol Biofuels 10(), 2017
PMID: 28690680
The emergence of Clostridium thermocellum as a high utility candidate for consolidated bioprocessing applications.
Akinosho H, Yee K, Close D, Ragauskas A., Front Chem 2(), 2014
PMID: 25207268
Akinosho H, Yee K, Close D, Ragauskas A., Front Chem 2(), 2014
PMID: 25207268
A comprehensive microbial insight into single-stage and two-stage anaerobic digestion of oxytetracycline-medicated cattle manure
Akyol Ç, Aydin S, Ince O, Ince B., 2016
Akyol Ç, Aydin S, Ince O, Ince B., 2016
Production of bioenergy and biochemicals from industrial and agricultural wastewater.
Angenent LT, Karim K, Al-Dahhan MH, Wrenn BA, Domiguez-Espinosa R., Trends Biotechnol. 22(9), 2004
PMID: 15331229
Angenent LT, Karim K, Al-Dahhan MH, Wrenn BA, Domiguez-Espinosa R., Trends Biotechnol. 22(9), 2004
PMID: 15331229
Microbial communities and their dynamics in biomethane production
Argyropoulos DN, Varzakas TH, John AH., 2013
Argyropoulos DN, Varzakas TH, John AH., 2013
Clostridium proteoclasticum sp. nov., a novel proteolytic bacterium from the bovine rumen.
Attwood GT, Reilly K, Patel BK., Int. J. Syst. Bacteriol. 46(3), 1996
PMID: 8782685
Attwood GT, Reilly K, Patel BK., Int. J. Syst. Bacteriol. 46(3), 1996
PMID: 8782685
Biogas Upgrading via Hydrogenotrophic Methanogenesis in Two-Stage Continuous Stirred Tank Reactors at Mesophilic and Thermophilic Conditions.
Bassani I, Kougias PG, Treu L, Angelidaki I., Environ. Sci. Technol. 49(20), 2015
PMID: 26390125
Bassani I, Kougias PG, Treu L, Angelidaki I., Environ. Sci. Technol. 49(20), 2015
PMID: 26390125
Defluviitoga tunisiensis gen. nov., sp. nov., a thermophilic bacterium isolated from a mesothermic and anaerobic whey digester.
Ben Hania W, Godbane R, Postec A, Hamdi M, Ollivier B, Fardeau ML., Int. J. Syst. Evol. Microbiol. 62(Pt 6), 2011
PMID: 21828011
Ben Hania W, Godbane R, Postec A, Hamdi M, Ollivier B, Fardeau ML., Int. J. Syst. Evol. Microbiol. 62(Pt 6), 2011
PMID: 21828011
Pathway of propionate oxidation by a syntrophic culture of Smithella propionica and Methanospirillum hungatei.
de Bok FA, Stams AJ, Dijkema C, Boone DR., Appl. Environ. Microbiol. 67(4), 2001
PMID: 11282636
de Bok FA, Stams AJ, Dijkema C, Boone DR., Appl. Environ. Microbiol. 67(4), 2001
PMID: 11282636
Deeply sequenced metagenome and metatranscriptome of a biogas-producing microbial community from an agricultural production-scale biogas plant.
Bremges A, Maus I, Belmann P, Eikmeyer F, Winkler A, Albersmeier A, Puhler A, Schluter A, Sczyrba A., Gigascience 4(), 2015
PMID: 26229594
Bremges A, Maus I, Belmann P, Eikmeyer F, Winkler A, Albersmeier A, Puhler A, Schluter A, Sczyrba A., Gigascience 4(), 2015
PMID: 26229594
How to use molecular biology tools for the study of the anaerobic digestion process?
Cabezas A, de JC, Callejas C, Galès A, Hamelin J, Marone A, Sousa DZ, Trably E, Etchebehere C., 2015
Cabezas A, de JC, Callejas C, Galès A, Hamelin J, Marone A, Sousa DZ, Trably E, Etchebehere C., 2015
Metagenomic Reconstruction of Key Anaerobic Digestion Pathways in Municipal Sludge and Industrial Wastewater Biogas-Producing Systems.
Cai M, Wilkins D, Chen J, Ng SK, Lu H, Jia Y, Lee PK., Front Microbiol 7(), 2016
PMID: 27252693
Cai M, Wilkins D, Chen J, Ng SK, Lu H, Jia Y, Lee PK., Front Microbiol 7(), 2016
PMID: 27252693
Metagenomic analysis and functional characterization of the biogas microbiome using high throughput shotgun sequencing and a novel binning strategy.
Campanaro S, Treu L, Kougias PG, De Francisci D, Valle G, Angelidaki I., Biotechnol Biofuels 9(), 2016
PMID: 26839589
Campanaro S, Treu L, Kougias PG, De Francisci D, Valle G, Angelidaki I., Biotechnol Biofuels 9(), 2016
PMID: 26839589
QIIME allows analysis of high-throughput community sequencing data.
Caporaso JG, Kuczynski J, Stombaugh J, Bittinger K, Bushman FD, Costello EK, Fierer N, Pena AG, Goodrich JK, Gordon JI, Huttley GA, Kelley ST, Knights D, Koenig JE, Ley RE, Lozupone CA, McDonald D, Muegge BD, Pirrung M, Reeder J, Sevinsky JR, Turnbaugh PJ, Walters WA, Widmann J, Yatsunenko T, Zaneveld J, Knight R., Nat. Methods 7(5), 2010
PMID: 20383131
Caporaso JG, Kuczynski J, Stombaugh J, Bittinger K, Bushman FD, Costello EK, Fierer N, Pena AG, Goodrich JK, Gordon JI, Huttley GA, Kelley ST, Knights D, Koenig JE, Ley RE, Lozupone CA, McDonald D, Muegge BD, Pirrung M, Reeder J, Sevinsky JR, Turnbaugh PJ, Walters WA, Widmann J, Yatsunenko T, Zaneveld J, Knight R., Nat. Methods 7(5), 2010
PMID: 20383131
Microbial community analyses in biogas reactors by molecular methods.
cater M, Fanedl L, Logar RM., Acta Chim Slov 60(2), 2013
PMID: 23878927
cater M, Fanedl L, Logar RM., Acta Chim Slov 60(2), 2013
PMID: 23878927
Microbial management of anaerobic digestion: exploiting the microbiome-functionality nexus.
Carballa M, Regueiro L, Lema JM., Curr. Opin. Biotechnol. 33(), 2015
PMID: 25682574
Carballa M, Regueiro L, Lema JM., Curr. Opin. Biotechnol. 33(), 2015
PMID: 25682574
Prokaryotic diversity and dynamics in a full-scale municipal solid waste anaerobic reactor from start-up to steady-state conditions.
Cardinali-Rezende J, Colturato LF, Colturato TD, Chartone-Souza E, Nascimento AM, Sanz JL., Bioresour. Technol. 119(), 2012
PMID: 22750748
Cardinali-Rezende J, Colturato LF, Colturato TD, Chartone-Souza E, Nascimento AM, Sanz JL., Bioresour. Technol. 119(), 2012
PMID: 22750748
The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases.
Caspi R, Billington R, Ferrer L, Foerster H, Fulcher CA, Keseler IM, Kothari A, Krummenacker M, Latendresse M, Mueller LA, Ong Q, Paley S, Subhraveti P, Weaver DS, Karp PD., Nucleic Acids Res. 44(D1), 2015
PMID: 26527732
Caspi R, Billington R, Ferrer L, Foerster H, Fulcher CA, Keseler IM, Kothari A, Krummenacker M, Latendresse M, Mueller LA, Ong Q, Paley S, Subhraveti P, Weaver DS, Karp PD., Nucleic Acids Res. 44(D1), 2015
PMID: 26527732
BRENDA, AMENDA and FRENDA the enzyme information system: new content and tools in 2009.
Chang A, Scheer M, Grote A, Schomburg I, Schomburg D., Nucleic Acids Res. 37(Database issue), 2008
PMID: 18984617
Chang A, Scheer M, Grote A, Schomburg I, Schomburg D., Nucleic Acids Res. 37(Database issue), 2008
PMID: 18984617
History and impact of RDP: a legacy from Carl Woese to microbiology.
Cole JR, Tiedje JM., RNA Biol 11(3), 2014
PMID: 24607969
Cole JR, Tiedje JM., RNA Biol 11(3), 2014
PMID: 24607969
Microbial community structure and methanogenic activity during start-up of psychrophilic anaerobic digesters treating synthetic industrial wastewaters.
Collins G, Woods A, McHugh S, Carton MW, O'Flaherty V., FEMS Microbiol. Ecol. 46(2), 2003
PMID: 19719569
Collins G, Woods A, McHugh S, Carton MW, O'Flaherty V., FEMS Microbiol. Ecol. 46(2), 2003
PMID: 19719569
Major pathway of methane formation from energy crops in agricultural biogas digesters
Demirel B., 2014
Demirel B., 2014
The roles of acetotrophic and hydrogenotrophic methanogens during anaerobic conversion of biomass to methane: a review
Demirel B, Scherer P., 2008
Demirel B, Scherer P., 2008
Pathways of energy conservation in methanogenic archaea
Deppenmeier U, Müller V, Gottschalk G., 1996
Deppenmeier U, Müller V, Gottschalk G., 1996
AUTHOR UNKNOWN, 2005
Search and clustering orders of magnitude faster than BLAST.
Edgar RC., Bioinformatics 26(19), 2010
PMID: 20709691
Edgar RC., Bioinformatics 26(19), 2010
PMID: 20709691
UPARSE: highly accurate OTU sequences from microbial amplicon reads.
Edgar RC., Nat. Methods 10(10), 2013
PMID: 23955772
Edgar RC., Nat. Methods 10(10), 2013
PMID: 23955772
AUTHOR UNKNOWN, 0
Flexible community structure correlates with stable community function in methanogenic bioreactor communities perturbed by glucose.
Fernandez AS, Hashsham SA, Dollhopf SL, Raskin L, Glagoleva O, Dazzo FB, Hickey RF, Criddle CS, Tiedje JM., Appl. Environ. Microbiol. 66(9), 2000
PMID: 10966429
Fernandez AS, Hashsham SA, Dollhopf SL, Raskin L, Glagoleva O, Dazzo FB, Hickey RF, Criddle CS, Tiedje JM., Appl. Environ. Microbiol. 66(9), 2000
PMID: 10966429
Insights into the distribution and abundance of the ubiquitous candidatus Saccharibacteria phylum following tag pyrosequencing.
Ferrari B, Winsley T, Ji M, Neilan B., Sci Rep 4(), 2014
PMID: 24492458
Ferrari B, Winsley T, Ji M, Neilan B., Sci Rep 4(), 2014
PMID: 24492458
Enzymology of one-carbon metabolism in methanogenic pathways.
Ferry JG., FEMS Microbiol. Rev. 23(1), 1999
PMID: 10077852
Ferry JG., FEMS Microbiol. Rev. 23(1), 1999
PMID: 10077852
InterPro in 2017-beyond protein family and domain annotations.
Finn RD, Attwood TK, Babbitt PC, Bateman A, Bork P, Bridge AJ, Chang HY, Dosztanyi Z, El-Gebali S, Fraser M, Gough J, Haft D, Holliday GL, Huang H, Huang X, Letunic I, Lopez R, Lu S, Marchler-Bauer A, Mi H, Mistry J, Natale DA, Necci M, Nuka G, Orengo CA, Park Y, Pesseat S, Piovesan D, Potter SC, Rawlings ND, Redaschi N, Richardson L, Rivoire C, Sangrador-Vegas A, Sigrist C, Sillitoe I, Smithers B, Squizzato S, Sutton G, Thanki N, Thomas PD, Tosatto SC, Wu CH, Xenarios I, Yeh LS, Young SY, Mitchell AL., Nucleic Acids Res. 45(D1), 2016
PMID: 27899635
Finn RD, Attwood TK, Babbitt PC, Bateman A, Bork P, Bridge AJ, Chang HY, Dosztanyi Z, El-Gebali S, Fraser M, Gough J, Haft D, Holliday GL, Huang H, Huang X, Letunic I, Lopez R, Lu S, Marchler-Bauer A, Mi H, Mistry J, Natale DA, Necci M, Nuka G, Orengo CA, Park Y, Pesseat S, Piovesan D, Potter SC, Rawlings ND, Redaschi N, Richardson L, Rivoire C, Sangrador-Vegas A, Sigrist C, Sillitoe I, Smithers B, Squizzato S, Sutton G, Thanki N, Thomas PD, Tosatto SC, Wu CH, Xenarios I, Yeh LS, Young SY, Mitchell AL., Nucleic Acids Res. 45(D1), 2016
PMID: 27899635
AUTHOR UNKNOWN, 0
Clostridium sticklandii, a specialist in amino acid degradation:revisiting its metabolism through its genome sequence.
Fonknechten N, Chaussonnerie S, Tricot S, Lajus A, Andreesen JR, Perchat N, Pelletier E, Gouyvenoux M, Barbe V, Salanoubat M, Le Paslier D, Weissenbach J, Cohen GN, Kreimeyer A., BMC Genomics 11(), 2010
PMID: 20937090
Fonknechten N, Chaussonnerie S, Tricot S, Lajus A, Andreesen JR, Perchat N, Pelletier E, Gouyvenoux M, Barbe V, Salanoubat M, Le Paslier D, Weissenbach J, Cohen GN, Kreimeyer A., BMC Genomics 11(), 2010
PMID: 20937090
Effects of geographic area, feedstock, temperature, and operating time on microbial communities of six full-scale biogas plants.
Fontana A, Patrone V, Puglisi E, Morelli L, Bassi D, Garuti M, Rossi L, Cappa F., Bioresour. Technol. 218(), 2016
PMID: 27450128
Fontana A, Patrone V, Puglisi E, Morelli L, Bassi D, Garuti M, Rossi L, Cappa F., Bioresour. Technol. 218(), 2016
PMID: 27450128
The dominant acetate degradation pathway/methanogenic composition in full-scale anaerobic digesters operating under different ammonia levels
Fotidis IA, Karakashev D, Angelidaki I., 2014
Fotidis IA, Karakashev D, Angelidaki I., 2014
Improved metagenome assemblies and taxonomic binning using long-read circular consensus sequence data.
Frank JA, Pan Y, Tooming-Klunderud A, Eijsink VGH, McHardy AC, Nederbragt AJ, Pope PB., Sci Rep 6(), 2016
PMID: 27156482
Frank JA, Pan Y, Tooming-Klunderud A, Eijsink VGH, McHardy AC, Nederbragt AJ, Pope PB., Sci Rep 6(), 2016
PMID: 27156482
Investigation into the effect of high concentrations of volatile fatty acids in anaerobic digestion on methanogenic communities.
Franke-Whittle IH, Walter A, Ebner C, Insam H., Waste Manag 34(11), 2014
PMID: 25164858
Franke-Whittle IH, Walter A, Ebner C, Insam H., Waste Manag 34(11), 2014
PMID: 25164858
Microbial community dynamics in replicate anaerobic digesters exposed sequentially to increasing organic loading rate, acidosis, and process recovery.
Goux X, Calusinska M, Lemaigre S, Marynowska M, Klocke M, Udelhoven T, Benizri E, Delfosse P., Biotechnol Biofuels 8(), 2015
PMID: 26288654
Goux X, Calusinska M, Lemaigre S, Marynowska M, Klocke M, Udelhoven T, Benizri E, Delfosse P., Biotechnol Biofuels 8(), 2015
PMID: 26288654
Deep metagenome and metatranscriptome analyses of microbial communities affiliated with an industrial biogas fermenter, a cow rumen, and elephant feces reveal major differences in carbohydrate hydrolysis strategies.
Gullert S, Fischer MA, Turaev D, Noebauer B, Ilmberger N, Wemheuer B, Alawi M, Rattei T, Daniel R, Schmitz RA, Grundhoff A, Streit WR., Biotechnol Biofuels 9(), 2016
PMID: 27279900
Gullert S, Fischer MA, Turaev D, Noebauer B, Ilmberger N, Wemheuer B, Alawi M, Rattei T, Daniel R, Schmitz RA, Grundhoff A, Streit WR., Biotechnol Biofuels 9(), 2016
PMID: 27279900
Dissecting microbial community structure and methane-producing pathways of a full-scale anaerobic reactor digesting activated sludge from wastewater treatment by metagenomic sequencing
Guo J, Peng Y, Ni B-J, Han X, Fan L, Yuan Z., 2015
Guo J, Peng Y, Ni B-J, Han X, Fan L, Yuan Z., 2015
Clostridium bornimense sp. nov., isolated from a mesophilic, two-phase, laboratory-scale biogas reactor.
Hahnke S, Striesow J, Elvert M, Mollar XP, Klocke M., Int. J. Syst. Evol. Microbiol. 64(Pt 8), 2014
PMID: 24860110
Hahnke S, Striesow J, Elvert M, Mollar XP, Klocke M., Int. J. Syst. Evol. Microbiol. 64(Pt 8), 2014
PMID: 24860110
Description of Proteiniphilum saccharofermentans sp. nov., Petrimonas mucosa sp. nov. and Fermentimonas caenicola gen. nov., sp. nov., isolated from mesophilic laboratory-scale biogas reactors, and emended description of the genus Proteiniphilum.
Hahnke S, Langer T, Koeck DE, Klocke M., Int. J. Syst. Evol. Microbiol. 66(3), 2016
PMID: 26782749
Hahnke S, Langer T, Koeck DE, Klocke M., Int. J. Syst. Evol. Microbiol. 66(3), 2016
PMID: 26782749
Proteiniborus indolifex sp. nov., isolated from a thermophilic industrial-scale biogas plant
Hahnke S, Langer T, Klocke M., 2018
Hahnke S, Langer T, Klocke M., 2018
A comparative study on the process efficiencies and microbial community structures of six full-scale wet and semi-dry anaerobic digesters treating food wastes.
Han G, Shin SG, Lee J, Shin J, Hwang S., Bioresour. Technol. 245(Pt A), 2017
PMID: 28926920
Han G, Shin SG, Lee J, Shin J, Hwang S., Bioresour. Technol. 245(Pt A), 2017
PMID: 28926920
Metaproteome analysis to determine the metabolically active part of a thermophilic microbial community producing biogas from agricultural biomass.
Hanreich A, Heyer R, Benndorf D, Rapp E, Pioch M, Reichl U, Klocke M., Can. J. Microbiol. 58(7), 2012
PMID: 22690648
Hanreich A, Heyer R, Benndorf D, Rapp E, Pioch M, Reichl U, Klocke M., Can. J. Microbiol. 58(7), 2012
PMID: 22690648
Metagenome and metaproteome analyses of microbial communities in mesophilic biogas-producing anaerobic batch fermentations indicate concerted plant carbohydrate degradation.
Hanreich A, Schimpf U, Zakrzewski M, Schluter A, Benndorf D, Heyer R, Rapp E, Puhler A, Reichl U, Klocke M., Syst. Appl. Microbiol. 36(5), 2013
PMID: 23694815
Hanreich A, Schimpf U, Zakrzewski M, Schluter A, Benndorf D, Heyer R, Rapp E, Puhler A, Reichl U, Klocke M., Syst. Appl. Microbiol. 36(5), 2013
PMID: 23694815
New perspective on uncultured bacterial phylogenetic division OP11.
Harris JK, Kelley ST, Pace NR., Appl. Environ. Microbiol. 70(2), 2004
PMID: 14766563
Harris JK, Kelley ST, Pace NR., Appl. Environ. Microbiol. 70(2), 2004
PMID: 14766563
Metaproteome analysis of the microbial communities in agricultural biogas plants
Heyer R, Kohrs F, Benndorf D, Rapp E, Kausmann R, Heiermann M, Klocke M, Reichl U., 2013
Heyer R, Kohrs F, Benndorf D, Rapp E, Kausmann R, Heiermann M, Klocke M, Reichl U., 2013
Proteotyping of biogas plant microbiomes separates biogas plants according to process temperature and reactor type.
Heyer R, Benndorf D, Kohrs F, De Vrieze J, Boon N, Hoffmann M, Rapp E, Schluter A, Sczyrba A, Reichl U., Biotechnol Biofuels 9(), 2016
PMID: 27462366
Heyer R, Benndorf D, Kohrs F, De Vrieze J, Boon N, Hoffmann M, Rapp E, Schluter A, Sczyrba A, Reichl U., Biotechnol Biofuels 9(), 2016
PMID: 27462366
eggNOG 4.5: a hierarchical orthology framework with improved functional annotations for eukaryotic, prokaryotic and viral sequences.
Huerta-Cepas J, Szklarczyk D, Forslund K, Cook H, Heller D, Walter MC, Rattei T, Mende DR, Sunagawa S, Kuhn M, Jensen LJ, von Mering C, Bork P., Nucleic Acids Res. 44(D1), 2015
PMID: 26582926
Huerta-Cepas J, Szklarczyk D, Forslund K, Cook H, Heller D, Walter MC, Rattei T, Mende DR, Sunagawa S, Kuhn M, Jensen LJ, von Mering C, Bork P., Nucleic Acids Res. 44(D1), 2015
PMID: 26582926
MEGAN Community Edition - Interactive Exploration and Analysis of Large-Scale Microbiome Sequencing Data.
Huson DH, Beier S, Flade I, Gorska A, El-Hadidi M, Mitra S, Ruscheweyh HJ, Tappu R., PLoS Comput. Biol. 12(6), 2016
PMID: 27327495
Huson DH, Beier S, Flade I, Gorska A, El-Hadidi M, Mitra S, Ruscheweyh HJ, Tappu R., PLoS Comput. Biol. 12(6), 2016
PMID: 27327495
Syntrophus aciditrophicus sp. nov., a new anaerobic bacterium that degrades fatty acids and benzoate in syntrophic association with hydrogen-using microorganisms
Jackson BE, Bhupathiraju VK, Tanner RS, Woese CR, McInerney MJ., 1999
Jackson BE, Bhupathiraju VK, Tanner RS, Woese CR, McInerney MJ., 1999
Comparative and joint analysis of two metagenomic datasets from a biogas fermenter obtained by 454-pyrosequencing.
Jaenicke S, Ander C, Bekel T, Bisdorf R, Droge M, Gartemann KH, Junemann S, Kaiser O, Krause L, Tille F, Zakrzewski M, Puhler A, Schluter A, Goesmann A., PLoS ONE 6(1), 2011
PMID: 21297863
Jaenicke S, Ander C, Bekel T, Bisdorf R, Droge M, Gartemann KH, Junemann S, Kaiser O, Krause L, Tille F, Zakrzewski M, Puhler A, Schluter A, Goesmann A., PLoS ONE 6(1), 2011
PMID: 21297863
Acetate threshold values and acetate activating enzymes in methanogenic bacteria
Jetten MSM, Stams AJM, Zehnder AJB., 1990
Jetten MSM, Stams AJM, Zehnder AJB., 1990
Bioinformatics for NGS-based metagenomics and the application to biogas research.
Junemann S, Kleinbolting N, Jaenicke S, Henke C, Hassa J, Nelkner J, Stolze Y, Albaum SP, Schluter A, Goesmann A, Sczyrba A, Stoye J., J. Biotechnol. 261(), 2017
PMID: 28823476
Junemann S, Kleinbolting N, Jaenicke S, Henke C, Hassa J, Nelkner J, Stolze Y, Albaum SP, Schluter A, Goesmann A, Sczyrba A, Stoye J., J. Biotechnol. 261(), 2017
PMID: 28823476
KEGG: new perspectives on genomes, pathways, diseases and drugs.
Kanehisa M, Furumichi M, Tanabe M, Sato Y, Morishima K., Nucleic Acids Res. 45(D1), 2016
PMID: 27899662
Kanehisa M, Furumichi M, Tanabe M, Sato Y, Morishima K., Nucleic Acids Res. 45(D1), 2016
PMID: 27899662
Influence of environmental conditions on methanogenic compositions in anaerobic biogas reactors.
Karakashev D, Batstone DJ, Angelidaki I., Appl. Environ. Microbiol. 71(1), 2005
PMID: 15640206
Karakashev D, Batstone DJ, Angelidaki I., Appl. Environ. Microbiol. 71(1), 2005
PMID: 15640206
Kinetic parameters and relative turnovers of some important catabolic reactions in digesting sludge.
Kaspar HF, Wuhrmann K., Appl. Environ. Microbiol. 36(1), 1978
PMID: 697354
Kaspar HF, Wuhrmann K., Appl. Environ. Microbiol. 36(1), 1978
PMID: 697354
Methanobacterium aggregans sp. nov., a hydrogenotrophic methanogenic archaeon isolated from an anaerobic digester.
Kern T, Linge M, Rother M., Int. J. Syst. Evol. Microbiol. 65(Pt 6), 2015
PMID: 25807978
Kern T, Linge M, Rother M., Int. J. Syst. Evol. Microbiol. 65(Pt 6), 2015
PMID: 25807978
Methanosarcina flavescens sp. nov., a methanogenic archaeon isolated from a full-scale anaerobic digester.
Kern T, Fischer MA, Deppenmeier U, Schmitz RA, Rother M., Int. J. Syst. Evol. Microbiol. 66(3), 2016
PMID: 26763977
Kern T, Fischer MA, Deppenmeier U, Schmitz RA, Rother M., Int. J. Syst. Evol. Microbiol. 66(3), 2016
PMID: 26763977
Towards a taxonomic coherence between average nucleotide identity and 16S rRNA gene sequence similarity for species demarcation of prokaryotes.
Kim M, Oh HS, Park SC, Chun J., Int. J. Syst. Evol. Microbiol. 64(Pt 2), 2014
PMID: 24505072
Kim M, Oh HS, Park SC, Chun J., Int. J. Syst. Evol. Microbiol. 64(Pt 2), 2014
PMID: 24505072
Genomic insights into members of the candidate phylum Hyd24-12 common in mesophilic anaerobic digesters.
Kirkegaard RH, Dueholm MS, McIlroy SJ, Nierychlo M, Karst SM, Albertsen M, Nielsen PH., ISME J 10(10), 2016
PMID: 27058503
Kirkegaard RH, Dueholm MS, McIlroy SJ, Nierychlo M, Karst SM, Albertsen M, Nielsen PH., ISME J 10(10), 2016
PMID: 27058503
The impact of immigration on microbial community composition in full-scale anaerobic digesters.
Kirkegaard RH, McIlroy SJ, Kristensen JM, Nierychlo M, Karst SM, Dueholm MS, Albertsen M, Nielsen PH., Sci Rep 7(1), 2017
PMID: 28839166
Kirkegaard RH, McIlroy SJ, Kristensen JM, Nierychlo M, Karst SM, Dueholm MS, Albertsen M, Nielsen PH., Sci Rep 7(1), 2017
PMID: 28839166
Microbial community analysis of a biogas-producing completely stirred tank reactor fed continuously with fodder beet silage as mono-substrate.
Klocke M, Mahnert P, Mundt K, Souidi K, Linke B., Syst. Appl. Microbiol. 30(2), 2006
PMID: 16697135
Klocke M, Mahnert P, Mundt K, Souidi K, Linke B., Syst. Appl. Microbiol. 30(2), 2006
PMID: 16697135
Microbiomes in bioenergy production: from analysis to management.
Koch C, Muller S, Harms H, Harnisch F., Curr. Opin. Biotechnol. 27(), 2013
PMID: 24863898
Koch C, Muller S, Harms H, Harnisch F., Curr. Opin. Biotechnol. 27(), 2013
PMID: 24863898
Comparative genotyping of Clostridium thermocellum strains isolated from biogas plants: genetic markers and characterization of cellulolytic potential.
Koeck DE, Zverlov VV, Liebl W, Schwarz WH., Syst. Appl. Microbiol. 37(5), 2014
PMID: 24951450
Koeck DE, Zverlov VV, Liebl W, Schwarz WH., Syst. Appl. Microbiol. 37(5), 2014
PMID: 24951450
Herbinix hemicellulosilytica gen. nov., sp. nov., a thermophilic cellulose-degrading bacterium isolated from a thermophilic biogas reactor.
Koeck DE, Ludwig W, Wanner G, Zverlov VV, Liebl W, Schwarz WH., Int. J. Syst. Evol. Microbiol. 65(8), 2015
PMID: 25872956
Koeck DE, Ludwig W, Wanner G, Zverlov VV, Liebl W, Schwarz WH., Int. J. Syst. Evol. Microbiol. 65(8), 2015
PMID: 25872956
Herbinix luporum sp. nov., a thermophilic cellulose-degrading bacterium isolated from a thermophilic biogas reactor.
Koeck DE, Hahnke S, Zverlov VV., Int. J. Syst. Evol. Microbiol. 66(10), 2016
PMID: 27453473
Koeck DE, Hahnke S, Zverlov VV., Int. J. Syst. Evol. Microbiol. 66(10), 2016
PMID: 27453473
Herbivorax saccincola gen. nov., sp. nov., a cellulolytic, anaerobic, thermophilic bacterium isolated via in sacco enrichments from a lab-scale biogas reactor.
Koeck DE, Mechelke M, Zverlov VV, Liebl W, Schwarz WH., Int. J. Syst. Evol. Microbiol. 66(11), 2016
PMID: 27499077
Koeck DE, Mechelke M, Zverlov VV, Liebl W, Schwarz WH., Int. J. Syst. Evol. Microbiol. 66(11), 2016
PMID: 27499077
Sample prefractionation with liquid isoelectric focusing enables in depth microbial metaproteome analysis of mesophilic and thermophilic biogas plants.
Kohrs F, Heyer R, Magnussen A, Benndorf D, Muth T, Behne A, Rapp E, Kausmann R, Heiermann M, Klocke M, Reichl U., Anaerobe 29(), 2013
PMID: 24309213
Kohrs F, Heyer R, Magnussen A, Benndorf D, Muth T, Behne A, Rapp E, Kausmann R, Heiermann M, Klocke M, Reichl U., Anaerobe 29(), 2013
PMID: 24309213
A novel archaeal species belonging to Methanoculleus genus identified via de-novo assembly and metagenomic binning process in biogas reactors.
Kougias PG, Campanaro S, Treu L, Zhu X, Angelidaki I., Anaerobe 46(), 2017
PMID: 28219787
Kougias PG, Campanaro S, Treu L, Zhu X, Angelidaki I., Anaerobe 46(), 2017
PMID: 28219787
The microcosm of a biogas fermenter. Comparison of moderate hyperthermophilic (60°C) with thermophilic (55°C) conditions
Krakat N, Westphal A, Satke K, Schmidt S, Scherer P., 2010
Krakat N, Westphal A, Satke K, Schmidt S, Scherer P., 2010
Phylogenetic classification of short environmental DNA fragments.
Krause L, Diaz NN, Goesmann A, Kelley S, Nattkemper TW, Rohwer F, Edwards RA, Stoye J., Nucleic Acids Res. 36(7), 2008
PMID: 18285365
Krause L, Diaz NN, Goesmann A, Kelley S, Nattkemper TW, Rohwer F, Edwards RA, Stoye J., Nucleic Acids Res. 36(7), 2008
PMID: 18285365
Temperature regulates methane production through the function centralization of microbial community in anaerobic digestion.
Lin Q, De Vrieze J, He G, Li X, Li J., Bioresour. Technol. 216(), 2016
PMID: 27236402
Lin Q, De Vrieze J, He G, Li X, Li J., Bioresour. Technol. 216(), 2016
PMID: 27236402
Influence of carbohydrates on growth and sporulation of Clostridium perfringens type A.
Labbe RG, Duncan CL., Appl Microbiol 29(3), 1975
PMID: 163617
Labbe RG, Duncan CL., Appl Microbiol 29(3), 1975
PMID: 163617
The rebirth of culture in microbiology through the example of culturomics to study human gut microbiota.
Lagier JC, Hugon P, Khelaifia S, Fournier PE, La Scola B, Raoult D., Clin. Microbiol. Rev. 28(1), 2015
PMID: 25567229
Lagier JC, Hugon P, Khelaifia S, Fournier PE, La Scola B, Raoult D., Clin. Microbiol. Rev. 28(1), 2015
PMID: 25567229
Towards molecular biomarkers for biogas production from lignocellulose-rich substrates.
Lebuhn M, Hanreich A, Klocke M, Schluter A, Bauer C, Perez CM., Anaerobe 29(), 2014
PMID: 24785351
Lebuhn M, Hanreich A, Klocke M, Schluter A, Bauer C, Perez CM., Anaerobe 29(), 2014
PMID: 24785351
Hydrogen partial pressures in a thermophilic acetate-oxidizing methanogenic coculture.
Lee MJ, Zinder SH., Appl. Environ. Microbiol. 54(6), 1988
PMID: 16347656
Lee MJ, Zinder SH., Appl. Environ. Microbiol. 54(6), 1988
PMID: 16347656
Temporal variation in methanogen communities of four different full-scale anaerobic digesters treating food waste-recycling wastewater.
Lee J, Hwang B, Koo T, Shin SG, Kim W, Hwang S., Bioresour. Technol. 168(), 2014
PMID: 24767792
Lee J, Hwang B, Koo T, Shin SG, Kim W, Hwang S., Bioresour. Technol. 168(), 2014
PMID: 24767792
A pyrosequencing-based metagenomic study of methane-producing microbial community in solid-state biogas reactor.
Li A, Chu Y, Wang X, Ren L, Yu J, Liu X, Yan J, Zhang L, Wu S, Li S., Biotechnol Biofuels 6(1), 2013
PMID: 23320936
Li A, Chu Y, Wang X, Ren L, Yu J, Liu X, Yan J, Zhang L, Wu S, Li S., Biotechnol Biofuels 6(1), 2013
PMID: 23320936
Petrotoga mobilis sp. nov., from a North Sea oil-production well.
Lien T, Madsen M, Rainey FA, Birkeland NK., Int. J. Syst. Bacteriol. 48 Pt 3(), 1998
PMID: 9734057
Lien T, Madsen M, Rainey FA, Birkeland NK., Int. J. Syst. Bacteriol. 48 Pt 3(), 1998
PMID: 9734057
Characterization of microbial diversity by determining terminal restriction fragment length polymorphisms of genes encoding 16S rRNA.
Liu WT, Marsh TL, Cheng H, Forney LJ., Appl. Environ. Microbiol. 63(11), 1997
PMID: 9361437
Liu WT, Marsh TL, Cheng H, Forney LJ., Appl. Environ. Microbiol. 63(11), 1997
PMID: 9361437
Accurate taxonomy assignments from 16S rRNA sequences produced by highly parallel pyrosequencers.
Liu Z, DeSantis TZ, Andersen GL, Knight R., Nucleic Acids Res. 36(18), 2008
PMID: 18723574
Liu Z, DeSantis TZ, Andersen GL, Knight R., Nucleic Acids Res. 36(18), 2008
PMID: 18723574
Importance of inoculum source and initial community structure for biogas production from agricultural substrates.
Liu T, Sun L, Muller B, Schnurer A., Bioresour. Technol. 245(Pt A), 2017
PMID: 28926908
Liu T, Sun L, Muller B, Schnurer A., Bioresour. Technol. 245(Pt A), 2017
PMID: 28926908
Metaproteomics of cellulose methanisation under thermophilic conditions reveals a surprisingly high proteolytic activity.
Lu F, Bize A, Guillot A, Monnet V, Madigou C, Chapleur O, Mazeas L, He P, Bouchez T., ISME J 8(1), 2013
PMID: 23949661
Lu F, Bize A, Guillot A, Monnet V, Madigou C, Chapleur O, Mazeas L, He P, Bouchez T., ISME J 8(1), 2013
PMID: 23949661
AUTHOR UNKNOWN, 0
Comparative analysis of taxonomic, functional, and metabolic patterns of microbiomes from 14 full-scale biogas reactors by metagenomic sequencing and radioisotopic analysis.
Luo G, Fotidis IA, Angelidaki I., Biotechnol Biofuels 9(), 2016
PMID: 26941838
Luo G, Fotidis IA, Angelidaki I., Biotechnol Biofuels 9(), 2016
PMID: 26941838
FLASH: fast length adjustment of short reads to improve genome assemblies.
Magoc T, Salzberg SL., Bioinformatics 27(21), 2011
PMID: 21903629
Magoc T, Salzberg SL., Bioinformatics 27(21), 2011
PMID: 21903629
Genomic characterization of Defluviitoga tunisiensis L3, a key hydrolytic bacterium in a thermophilic biogas plant and its abundance as determined by metagenome fragment recruitment.
Maus I, Cibis KG, Bremges A, Stolze Y, Wibberg D, Tomazetto G, Blom J, Sczyrba A, Konig H, Puhler A, Schluter A., J. Biotechnol. 232(), 2016
PMID: 27165504
Maus I, Cibis KG, Bremges A, Stolze Y, Wibberg D, Tomazetto G, Blom J, Sczyrba A, Konig H, Puhler A, Schluter A., J. Biotechnol. 232(), 2016
PMID: 27165504
Unraveling the microbiome of a thermophilic biogas plant by metagenome and metatranscriptome analysis complemented by characterization of bacterial and archaeal isolates.
Maus I, Koeck DE, Cibis KG, Hahnke S, Kim YS, Langer T, Kreubel J, Erhard M, Bremges A, Off S, Stolze Y, Jaenicke S, Goesmann A, Sczyrba A, Scherer P, Konig H, Schwarz WH, Zverlov VV, Liebl W, Puhler A, Schluter A, Klocke M., Biotechnol Biofuels 9(), 2016
PMID: 27525040
Maus I, Koeck DE, Cibis KG, Hahnke S, Kim YS, Langer T, Kreubel J, Erhard M, Bremges A, Off S, Stolze Y, Jaenicke S, Goesmann A, Sczyrba A, Scherer P, Konig H, Schwarz WH, Zverlov VV, Liebl W, Puhler A, Schluter A, Klocke M., Biotechnol Biofuels 9(), 2016
PMID: 27525040
Biphasic Study to Characterize Agricultural Biogas Plants by High-Throughput 16S rRNA Gene Amplicon Sequencing and Microscopic Analysis.
Maus I, Kim YS, Wibberg D, Stolze Y, Off S, Antonczyk S, Puhler A, Scherer P, Schluter A., J. Microbiol. Biotechnol. 27(2), 2017
PMID: 27780961
Maus I, Kim YS, Wibberg D, Stolze Y, Off S, Antonczyk S, Puhler A, Scherer P, Schluter A., J. Microbiol. Biotechnol. 27(2), 2017
PMID: 27780961
The anaerobic thermophilic cellulolytic bacteria.
McBEE RH., Bacteriol Rev 14(1), 1950
PMID: 15420123
McBEE RH., Bacteriol Rev 14(1), 1950
PMID: 15420123
The characteristics of Clostridium thermocellum.
McBEE RH., J. Bacteriol. 67(4), 1954
PMID: 13152068
McBEE RH., J. Bacteriol. 67(4), 1954
PMID: 13152068
The metagenomics RAST server - a public resource for the automatic phylogenetic and functional analysis of metagenomes.
Meyer F, Paarmann D, D'Souza M, Olson R, Glass EM, Kubal M, Paczian T, Rodriguez A, Stevens R, Wilke A, Wilkening J, Edwards RA., BMC Bioinformatics 9(), 2008
PMID: 18803844
Meyer F, Paarmann D, D'Souza M, Olson R, Glass EM, Kubal M, Paczian T, Rodriguez A, Stevens R, Wilke A, Wilkening J, Edwards RA., BMC Bioinformatics 9(), 2008
PMID: 18803844
Mesophilic versus thermophilic anaerobic digestion of cattle manure: methane productivity and microbial ecology.
Moset V, Poulsen M, Wahid R, Hojberg O, Moller HB., Microb Biotechnol 8(5), 2015
PMID: 25737010
Moset V, Poulsen M, Wahid R, Hojberg O, Moller HB., Microb Biotechnol 8(5), 2015
PMID: 25737010
Estimation of diversity and community structure through restriction fragment length polymorphism distribution analysis of bacterial 16S rRNA genes from a microbial mat at an active, hydrothermal vent system, Loihi Seamount, Hawaii.
Moyer CL, Dobbs FC, Karl DM., Appl. Environ. Microbiol. 60(3), 1994
PMID: 7512808
Moyer CL, Dobbs FC, Karl DM., Appl. Environ. Microbiol. 60(3), 1994
PMID: 7512808
Bacterial community composition and fhs profiles of low- and high-ammonia biogas digesters reveal novel syntrophic acetate-oxidising bacteria.
Muller B, Sun L, Westerholm M, Schnurer A., Biotechnol Biofuels 9(), 2016
PMID: 26925165
Muller B, Sun L, Westerholm M, Schnurer A., Biotechnol Biofuels 9(), 2016
PMID: 26925165
Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA.
Muyzer G, de Waal EC, Uitterlinden AG., Appl. Environ. Microbiol. 59(3), 1993
PMID: 7683183
Muyzer G, de Waal EC, Uitterlinden AG., Appl. Environ. Microbiol. 59(3), 1993
PMID: 7683183
Anaerobic digestion technology in livestock manure treatment for biogas production: a review
Nasir IM, Mohd TI, Omar R., 2012
Nasir IM, Mohd TI, Omar R., 2012
Archaea diversity within a commercial biogas plant utilizing herbal biomass determined by 16S rDNA and mcrA analysis.
Nettmann E, Bergmann I, Mundt K, Linke B, Klocke M., J. Appl. Microbiol. 105(6), 2008
PMID: 19120632
Nettmann E, Bergmann I, Mundt K, Linke B, Klocke M., J. Appl. Microbiol. 105(6), 2008
PMID: 19120632
Polyphasic analyses of methanogenic archaeal communities in agricultural biogas plants.
Nettmann E, Bergmann I, Pramschufer S, Mundt K, Plogsties V, Herrmann C, Klocke M., Appl. Environ. Microbiol. 76(8), 2010
PMID: 20154117
Nettmann E, Bergmann I, Pramschufer S, Mundt K, Plogsties V, Herrmann C, Klocke M., Appl. Environ. Microbiol. 76(8), 2010
PMID: 20154117
The SEED and the Rapid Annotation of microbial genomes using Subsystems Technology (RAST).
Overbeek R, Olson R, Pusch GD, Olsen GJ, Davis JJ, Disz T, Edwards RA, Gerdes S, Parrello B, Shukla M, Vonstein V, Wattam AR, Xia F, Stevens R., Nucleic Acids Res. 42(Database issue), 2013
PMID: 24293654
Overbeek R, Olson R, Pusch GD, Olsen GJ, Davis JJ, Disz T, Edwards RA, Gerdes S, Parrello B, Shukla M, Vonstein V, Wattam AR, Xia F, Stevens R., Nucleic Acids Res. 42(Database issue), 2013
PMID: 24293654
An integrated metagenome and -proteome analysis of the microbial community residing in a biogas production plant.
Ortseifen V, Stolze Y, Maus I, Sczyrba A, Bremges A, Albaum SP, Jaenicke S, Fracowiak J, Puhler A, Schluter A., J. Biotechnol. 231(), 2016
PMID: 27312700
Ortseifen V, Stolze Y, Maus I, Sczyrba A, Bremges A, Albaum SP, Jaenicke S, Fracowiak J, Puhler A, Schluter A., J. Biotechnol. 231(), 2016
PMID: 27312700
Effect of bioaugmentation by cellulolytic bacteria enriched from sheep rumen on methane production from wheat straw.
Ozbayram EG, Kleinsteuber S, Nikolausz M, Ince B, Ince O., Anaerobe 46(), 2017
PMID: 28323135
Ozbayram EG, Kleinsteuber S, Nikolausz M, Ince B, Ince O., Anaerobe 46(), 2017
PMID: 28323135
Distinct and diverse anaerobic bacterial communities in boreal lakes dominated by candidate division OD1.
Peura S, Eiler A, Bertilsson S, Nykanen H, Tiirola M, Jones RI., ISME J 6(9), 2012
PMID: 22418623
Peura S, Eiler A, Bertilsson S, Nykanen H, Tiirola M, Jones RI., ISME J 6(9), 2012
PMID: 22418623
Syntrophorhabdus aromaticivorans gen. nov., sp. nov., the first cultured anaerobe capable of degrading phenol to acetate in obligate syntrophic associations with a hydrogenotrophic methanogen.
Qiu YL, Hanada S, Ohashi A, Harada H, Kamagata Y, Sekiguchi Y., Appl. Environ. Microbiol. 74(7), 2008
PMID: 18281436
Qiu YL, Hanada S, Ohashi A, Harada H, Kamagata Y, Sekiguchi Y., Appl. Environ. Microbiol. 74(7), 2008
PMID: 18281436
The SILVA ribosomal RNA gene database project: improved data processing and web-based tools.
Quast C, Pruesse E, Yilmaz P, Gerken J, Schweer T, Yarza P, Peplies J, Glockner FO., Nucleic Acids Res. 41(Database issue), 2012
PMID: 23193283
Quast C, Pruesse E, Yilmaz P, Gerken J, Schweer T, Yarza P, Peplies J, Glockner FO., Nucleic Acids Res. 41(Database issue), 2012
PMID: 23193283
Analysis of the microbiome: Advantages of whole genome shotgun versus 16S amplicon sequencing.
Ranjan R, Rani A, Metwally A, McGee HS, Perkins DL., Biochem. Biophys. Res. Commun. 469(4), 2015
PMID: 26718401
Ranjan R, Rani A, Metwally A, McGee HS, Perkins DL., Biochem. Biophys. Res. Commun. 469(4), 2015
PMID: 26718401
The core populations and co-occurrence patterns of prokaryotic communities in household biogas digesters.
Rui J, Li J, Zhang S, Yan X, Wang Y, Li X., Biotechnol Biofuels 8(), 2015
PMID: 26413157
Rui J, Li J, Zhang S, Yan X, Wang Y, Li X., Biotechnol Biofuels 8(), 2015
PMID: 26413157
Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities.
Schloss PD, Westcott SL, Ryabin T, Hall JR, Hartmann M, Hollister EB, Lesniewski RA, Oakley BB, Parks DH, Robinson CJ, Sahl JW, Stres B, Thallinger GG, Van Horn DJ, Weber CF., Appl. Environ. Microbiol. 75(23), 2009
PMID: 19801464
Schloss PD, Westcott SL, Ryabin T, Hall JR, Hartmann M, Hollister EB, Lesniewski RA, Oakley BB, Parks DH, Robinson CJ, Sahl JW, Stres B, Thallinger GG, Van Horn DJ, Weber CF., Appl. Environ. Microbiol. 75(23), 2009
PMID: 19801464
The metagenome of a biogas-producing microbial community of a production-scale biogas plant fermenter analysed by the 454-pyrosequencing technology.
Schluter A, Bekel T, Diaz NN, Dondrup M, Eichenlaub R, Gartemann KH, Krahn I, Krause L, Kromeke H, Kruse O, Mussgnug JH, Neuweger H, Niehaus K, Puhler A, Runte KJ, Szczepanowski R, Tauch A, Tilker A, Viehover P, Goesmann A., J. Biotechnol. 136(1-2), 2008
PMID: 18597880
Schluter A, Bekel T, Diaz NN, Dondrup M, Eichenlaub R, Gartemann KH, Krahn I, Krause L, Kromeke H, Kruse O, Mussgnug JH, Neuweger H, Niehaus K, Puhler A, Runte KJ, Szczepanowski R, Tauch A, Tilker A, Viehover P, Goesmann A., J. Biotechnol. 136(1-2), 2008
PMID: 18597880
AUTHOR UNKNOWN, 0
Biogas Production: Microbiology and Technology.
Schnurer A., Adv. Biochem. Eng. Biotechnol. 156(), 2016
PMID: 27432246
Schnurer A., Adv. Biochem. Eng. Biotechnol. 156(), 2016
PMID: 27432246
Ammonia, a selective agent for methane production by syntrophic acetate oxidation at mesophilic temperature.
Schnurer A, Nordberg A., Water Sci. Technol. 57(5), 2008
PMID: 18401146
Schnurer A, Nordberg A., Water Sci. Technol. 57(5), 2008
PMID: 18401146
Mesophilic syntrophic acetate oxidation during methane formation in biogas reactors
Schnürer A, Zellner G, Svensson BH., 1999
Schnürer A, Zellner G, Svensson BH., 1999
Microbial ecology of the leach bed anaerobic digestion of unsorted municipal solid waste.
Silvey P, Pullammanappallil PC, Blackall L, Nichols P., Water Sci. Technol. 41(3), 2000
PMID: 11382013
Silvey P, Pullammanappallil PC, Blackall L, Nichols P., Water Sci. Technol. 41(3), 2000
PMID: 11382013
Halocella cellulolytica gen. nov., sp. nov., a new obligately anaerobic, halophilic, cellulolytic bacterium
Simankova MV, Chernych NA, Osipov GA, Zavarzin GA., 1993
Simankova MV, Chernych NA, Osipov GA, Zavarzin GA., 1993
Simó C, Cifuentes A, García-Cañas V., 2014
BacDive--The Bacterial Diversity Metadatabase in 2016.
Sohngen C, Podstawka A, Bunk B, Gleim D, Vetcininova A, Reimer LC, Ebeling C, Pendarovski C, Overmann J., Nucleic Acids Res. 44(D1), 2015
PMID: 26424852
Sohngen C, Podstawka A, Bunk B, Gleim D, Vetcininova A, Reimer LC, Ebeling C, Pendarovski C, Overmann J., Nucleic Acids Res. 44(D1), 2015
PMID: 26424852
Metaproteomics-guided selection of targeted enzymes for bioprospecting of mixed microbial communities.
Speda J, Jonsson BH, Carlsson U, Karlsson M., Biotechnol Biofuels 10(), 2017
PMID: 28523076
Speda J, Jonsson BH, Carlsson U, Karlsson M., Biotechnol Biofuels 10(), 2017
PMID: 28523076
Comparative metagenomics of biogas-producing microbial communities from production-scale biogas plants operating under wet or dry fermentation conditions.
Stolze Y, Zakrzewski M, Maus I, Eikmeyer F, Jaenicke S, Rottmann N, Siebner C, Puhler A, Schluter A., Biotechnol Biofuels 8(), 2015
PMID: 25688290
Stolze Y, Zakrzewski M, Maus I, Eikmeyer F, Jaenicke S, Rottmann N, Siebner C, Puhler A, Schluter A., Biotechnol Biofuels 8(), 2015
PMID: 25688290
Identification and genome reconstruction of abundant distinct taxa in microbiomes from one thermophilic and three mesophilic production-scale biogas plants.
Stolze Y, Bremges A, Rumming M, Henke C, Maus I, Puhler A, Sczyrba A, Schluter A., Biotechnol Biofuels 9(), 2016
PMID: 27462367
Stolze Y, Bremges A, Rumming M, Henke C, Maus I, Puhler A, Sczyrba A, Schluter A., Biotechnol Biofuels 9(), 2016
PMID: 27462367
Metagenomic analysis of methanogen populations in three full-scale mesophilic anaerobic manure digesters operated on dairy farms in Vermont, USA.
St-Pierre B, Wright AD., Bioresour. Technol. 138(), 2013
PMID: 23624045
St-Pierre B, Wright AD., Bioresour. Technol. 138(), 2013
PMID: 23624045
Comparative metagenomic analysis of bacterial populations in three full-scale mesophilic anaerobic manure digesters.
St-Pierre B, Wright AD., Appl. Microbiol. Biotechnol. 98(6), 2013
PMID: 24085391
St-Pierre B, Wright AD., Appl. Microbiol. Biotechnol. 98(6), 2013
PMID: 24085391
From mesophilic to thermophilic digestion: the transitions of anaerobic bacterial, archaeal, and fungal community structures in sludge and manure samples.
Sun W, Yu G, Louie T, Liu T, Zhu C, Xue G, Gao P., Appl. Microbiol. Biotechnol. 99(23), 2015
PMID: 26245681
Sun W, Yu G, Louie T, Liu T, Zhu C, Xue G, Gao P., Appl. Microbiol. Biotechnol. 99(23), 2015
PMID: 26245681
The microbial community structure in industrial biogas plants influences the degradation rate of straw and cellulose in batch tests.
Sun L, Liu T, Muller B, Schnurer A., Biotechnol Biofuels 9(), 2016
PMID: 27330562
Sun L, Liu T, Muller B, Schnurer A., Biotechnol Biofuels 9(), 2016
PMID: 27330562
454 pyrosequencing analyses of bacterial and archaeal richness in 21 full-scale biogas digesters.
Sundberg C, Al-Soud WA, Larsson M, Alm E, Yekta SS, Svensson BH, Sorensen SJ, Karlsson A., FEMS Microbiol. Ecol. 85(3), 2013
PMID: 23678985
Sundberg C, Al-Soud WA, Larsson M, Alm E, Yekta SS, Svensson BH, Sorensen SJ, Karlsson A., FEMS Microbiol. Ecol. 85(3), 2013
PMID: 23678985
Development of a prokaryotic universal primer for simultaneous analysis of Bacteria and Archaea using next-generation sequencing.
Takahashi S, Tomita J, Nishioka K, Hisada T, Nishijima M., PLoS ONE 9(8), 2014
PMID: 25144201
Takahashi S, Tomita J, Nishioka K, Hisada T, Nishijima M., PLoS ONE 9(8), 2014
PMID: 25144201
The COG database: a tool for genome-scale analysis of protein functions and evolution.
Tatusov RL, Galperin MY, Natale DA, Koonin EV., Nucleic Acids Res. 28(1), 2000
PMID: 10592175
Tatusov RL, Galperin MY, Natale DA, Koonin EV., Nucleic Acids Res. 28(1), 2000
PMID: 10592175
Community shifts in a well-operating agricultural biogas plant: how process variations are handled by the microbiome.
Theuerl S, Kohrs F, Benndorf D, Maus I, Wibberg D, Schluter A, Kausmann R, Heiermann M, Rapp E, Reichl U, Puhler A, Klocke M., Appl. Microbiol. Biotechnol. 99(18), 2015
PMID: 25998656
Theuerl S, Kohrs F, Benndorf D, Maus I, Wibberg D, Schluter A, Kausmann R, Heiermann M, Rapp E, Reichl U, Puhler A, Klocke M., Appl. Microbiol. Biotechnol. 99(18), 2015
PMID: 25998656
Primer and platform effects on 16S rRNA tag sequencing.
Tremblay J, Singh K, Fern A, Kirton ES, He S, Woyke T, Lee J, Chen F, Dangl JL, Tringe SG., Front Microbiol 6(), 2015
PMID: 26300854
Tremblay J, Singh K, Fern A, Kirton ES, He S, Woyke T, Lee J, Chen F, Dangl JL, Tringe SG., Front Microbiol 6(), 2015
PMID: 26300854
Untangling the Effect of Fatty Acid Addition at Species Level Revealed Different Transcriptional Responses of the Biogas Microbial Community Members.
Treu L, Campanaro S, Kougias PG, Zhu X, Angelidaki I., Environ. Sci. Technol. 50(11), 2016
PMID: 27154312
Treu L, Campanaro S, Kougias PG, Zhu X, Angelidaki I., Environ. Sci. Technol. 50(11), 2016
PMID: 27154312
Deeper insight into the structure of the anaerobic digestion microbial community; the biogas microbiome database is expanded with 157 new genomes.
Treu L, Kougias PG, Campanaro S, Bassani I, Angelidaki I., Bioresour. Technol. 216(), 2016
PMID: 27243603
Treu L, Kougias PG, Campanaro S, Bassani I, Angelidaki I., Bioresour. Technol. 216(), 2016
PMID: 27243603
Deterministic processes guide long-term synchronised population dynamics in replicate anaerobic digesters.
Vanwonterghem I, Jensen PD, Dennis PG, Hugenholtz P, Rabaey K, Tyson GW., ISME J 8(10), 2014
PMID: 24739627
Vanwonterghem I, Jensen PD, Dennis PG, Hugenholtz P, Rabaey K, Tyson GW., ISME J 8(10), 2014
PMID: 24739627
Relating Anaerobic Digestion Microbial Community and Process Function.
Venkiteshwaran K, Bocher B, Maki J, Zitomer D., Microbiol Insights 8(Suppl 2), 2015
PMID: 27127410
Venkiteshwaran K, Bocher B, Maki J, Zitomer D., Microbiol Insights 8(Suppl 2), 2015
PMID: 27127410
The variability of the 16S rRNA gene in bacterial genomes and its consequences for bacterial community analyses.
Vetrovsky T, Baldrian P., PLoS ONE 8(2), 2013
PMID: 23460914
Vetrovsky T, Baldrian P., PLoS ONE 8(2), 2013
PMID: 23460914
Methanosarcina: the rediscovered methanogen for heavy duty biomethanation.
De Vrieze J, Hennebel T, Boon N, Verstraete W., Bioresour. Technol. 112(), 2012
PMID: 22418081
De Vrieze J, Hennebel T, Boon N, Verstraete W., Bioresour. Technol. 112(), 2012
PMID: 22418081
Evaluation of PacBio sequencing for full-length bacterial 16S rRNA gene classification.
Wagner J, Coupland P, Browne HP, Lawley TD, Francis SC, Parkhill J., BMC Microbiol. 16(1), 2016
PMID: 27842515
Wagner J, Coupland P, Browne HP, Lawley TD, Francis SC, Parkhill J., BMC Microbiol. 16(1), 2016
PMID: 27842515
Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy.
Wang Q, Garrity GM, Tiedje JM, Cole JR., Appl. Environ. Microbiol. 73(16), 2007
PMID: 17586664
Wang Q, Garrity GM, Tiedje JM, Cole JR., Appl. Environ. Microbiol. 73(16), 2007
PMID: 17586664
Study on the bio-methane yield and microbial community structure in enzyme enhanced anaerobic co-digestion of cow manure and corn straw.
Wang X, Li Z, Zhou X, Wang Q, Wu Y, Saino M, Bai X., Bioresour. Technol. 219(), 2016
PMID: 27484671
Wang X, Li Z, Zhou X, Wang Q, Wu Y, Saino M, Bai X., Bioresour. Technol. 219(), 2016
PMID: 27484671
Biogas production: current state and perspectives.
Weiland P., Appl. Microbiol. Biotechnol. 85(4), 2009
PMID: 19777226
Weiland P., Appl. Microbiol. Biotechnol. 85(4), 2009
PMID: 19777226
Incubation of innovative methanogenic communities to seed anaerobic digesters.
Witarsa F, Lansing S, Yarwood S, Gonzalez Mateu M., Appl. Microbiol. Biotechnol. 100(22), 2016
PMID: 27717964
Witarsa F, Lansing S, Yarwood S, Gonzalez Mateu M., Appl. Microbiol. Biotechnol. 100(22), 2016
PMID: 27717964
Thermophilic microbial cellulose decomposition and methanogenesis pathways recharacterized by metatranscriptomic and metagenomic analysis.
Xia Y, Wang Y, Fang HH, Jin T, Zhong H, Zhang T., Sci Rep 4(), 2014
PMID: 25330991
Xia Y, Wang Y, Fang HH, Jin T, Zhong H, Zhang T., Sci Rep 4(), 2014
PMID: 25330991
Cellular adhesiveness and cellulolytic capacity in Anaerolineae revealed by omics-based genome interpretation.
Xia Y, Wang Y, Wang Y, Chin FY, Zhang T., Biotechnol Biofuels 9(), 2016
PMID: 27222666
Xia Y, Wang Y, Wang Y, Chin FY, Zhang T., Biotechnol Biofuels 9(), 2016
PMID: 27222666
Bioreactor performance and microbial community dynamics in a production-scale biogas plant in northeastern China
Yamei G, Anyi Y, Jun B, Ruxia M, Lei Y, Yanjie W, Weidong W., 2017
Yamei G, Anyi Y, Jun B, Ruxia M, Lei Y, Yanjie W, Weidong W., 2017
Metabolomics reveals stage-specific metabolic pathways of microbial communities in two-stage anaerobic fermentation of corn-stalk.
Yang D, Fan X, Shi X, Lian S, Qiao J, Guo R., Biotechnol. Lett. 36(7), 2014
PMID: 24658741
Yang D, Fan X, Shi X, Lian S, Qiao J, Guo R., Biotechnol. Lett. 36(7), 2014
PMID: 24658741
Metagenomic analysis of sludge from full-scale anaerobic digesters operated in municipal wastewater treatment plants.
Yang Y, Yu K, Xia Y, Lau FT, Tang DT, Fung WC, Fang HH, Zhang T., Appl. Microbiol. Biotechnol. 98(12), 2014
PMID: 24633414
Yang Y, Yu K, Xia Y, Lau FT, Tang DT, Fung WC, Fang HH, Zhang T., Appl. Microbiol. Biotechnol. 98(12), 2014
PMID: 24633414
Sensitivity and correlation of hypervariable regions in 16S rRNA genes in phylogenetic analysis.
Yang B, Wang Y, Qian PY., BMC Bioinformatics 17(), 2016
PMID: 27000765
Yang B, Wang Y, Qian PY., BMC Bioinformatics 17(), 2016
PMID: 27000765
Uniting the classification of cultured and uncultured bacteria and archaea using 16S rRNA gene sequences.
Yarza P, Yilmaz P, Pruesse E, Glockner FO, Ludwig W, Schleifer KH, Whitman WB, Euzeby J, Amann R, Rossello-Mora R., Nat. Rev. Microbiol. 12(9), 2014
PMID: 25118885
Yarza P, Yilmaz P, Pruesse E, Glockner FO, Ludwig W, Schleifer KH, Whitman WB, Euzeby J, Amann R, Rossello-Mora R., Nat. Rev. Microbiol. 12(9), 2014
PMID: 25118885
Single cell genome sequencing.
Yilmaz S, Singh AK., Curr. Opin. Biotechnol. 23(3), 2011
PMID: 22154471
Yilmaz S, Singh AK., Curr. Opin. Biotechnol. 23(3), 2011
PMID: 22154471
Biogas production and methanogenic archaeal community in mesophilic and thermophilic anaerobic co-digestion processes
Yu D, Kurola JM, Lähde K, Kymäläinen M, Sinkkonen A, Romantschuk M., 2014
Yu D, Kurola JM, Lähde K, Kymäläinen M, Sinkkonen A, Romantschuk M., 2014
Profiling of the metabolically active community from a production-scale biogas plant by means of high-throughput metatranscriptome sequencing.
Zakrzewski M, Goesmann A, Jaenicke S, Junemann S, Eikmeyer F, Szczepanowski R, Al-Soud WA, Sorensen S, Puhler A, Schluter A., J. Biotechnol. 158(4), 2012
PMID: 22342600
Zakrzewski M, Goesmann A, Jaenicke S, Junemann S, Eikmeyer F, Szczepanowski R, Al-Soud WA, Sorensen S, Puhler A, Schluter A., J. Biotechnol. 158(4), 2012
PMID: 22342600
Biogas from anaerobic digestion processes. Research updates
Zhang Q, Hu J, Lee D-J., 2016
Zhang Q, Hu J, Lee D-J., 2016
Diversity of methanogenic archaea in a biogas reactor fed with swine feces as the mono-substrate by mcrA analysis.
Zhu C, Zhang J, Tang Y, Zhengkai X, Song R., Microbiol. Res. 166(1), 2010
PMID: 20116227
Zhu C, Zhang J, Tang Y, Zhengkai X, Song R., Microbiol. Res. 166(1), 2010
PMID: 20116227
Metagenomic and metaproteomic analyses of a corn stover-adapted microbial consortium EMSD5 reveal its taxonomic and enzymatic basis for degrading lignocellulose.
Zhu N, Yang J, Ji L, Liu J, Yang Y, Yuan H., Biotechnol Biofuels 9(), 2016
PMID: 27833656
Zhu N, Yang J, Ji L, Liu J, Yang Y, Yuan H., Biotechnol Biofuels 9(), 2016
PMID: 27833656
Microbial community structure and dynamics during anaerobic digestion of various agricultural waste materials.
Ziganshin AM, Liebetrau J, Proter J, Kleinsteuber S., Appl. Microbiol. Biotechnol. 97(11), 2013
PMID: 23624683
Ziganshin AM, Liebetrau J, Proter J, Kleinsteuber S., Appl. Microbiol. Biotechnol. 97(11), 2013
PMID: 23624683
Comparison of anaerobic digestion strategies of nitrogen-rich substrates: Performance of anaerobic reactors and microbial community diversity.
Ziganshina EE, Ibragimov EM, Vankov PY, Miluykov VA, Ziganshin AM., Waste Manag 59(), 2016
PMID: 27836515
Ziganshina EE, Ibragimov EM, Vankov PY, Miluykov VA, Ziganshin AM., Waste Manag 59(), 2016
PMID: 27836515
Conversion of acetic acid to methane by thermophiles
Zinder SH., 1990
Zinder SH., 1990
Export
Markieren/ Markierung löschen
Markierte Publikationen
Web of Science
Dieser Datensatz im Web of Science®Quellen
PMID: 29713790
PubMed | Europe PMC
Suchen in