First genomic analysis of the broad-host-range Rhizobium sp LPU83 strain, a member of the low-genetic diversity Oregon-like Rhizobium sp group
Torres Tejerizo G, Florencia Del Papa M, Draghi W, Lozano M, de los Angeles Giusti M, Martini C, Eugenia Salas M, Salto I, Wibberg D, Szczepanowski R, Weidner S, et al. (2011)
Journal of Biotechnology 155(1): 3-10.
Zeitschriftenaufsatz
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Autor*in
Torres Tejerizo, Gonzalo;
Florencia Del Papa, Maria;
Draghi, Walter;
Lozano, Mauricio;
de los Angeles Giusti, Maria;
Martini, Carla;
Eugenia Salas, Maria;
Salto, Ileana;
Wibberg, DanielUniBi;
Szczepanowski, RafaelUniBi;
Weidner, StefanUniBi;
Schlüter, AndreasUniBi
Alle
Alle
Einrichtung
Abstract / Bemerkung
Alfalfa (Medicago sativa) is the most cultivated forage legume for cattle and animal feeding, occupying about 32 million hectares over the world. Management of the N(2)-fixing symbiosis of this plant to maximize crop production is therefore an important objective. A fundamental constraint to this aim emerges when a moderately low soil pH hampers the establishment of an effective symbiosis with indigenous and/or inoculated rhizobia. Besides the association of alfalfa with Ensifer (Sinorhizobium) meliloti, this legume is able to establish a symbiosis with Ensifer (Sinorhizobium) medicae and with less characterized types of rhizobia, such as the Oregon-like strains, Rhizobium sp. Or191 initially isolated in the USA, and the Rhizobium sp. LPU83 strain, from Argentina. These strains are acid-tolerant, highly competitive for acidic-soil-alfalfa nodulation, but inefficient for biological nitrogen fixation with alfalfa. These features position the Oregon-like rhizobia as strains of potential risk in agricultural soils compared with the efficient symbiont E. meliloti. Moreover, the collected genetic information has revealed that the genomic structure of these rhizobial isolates is complex in terms of sequence similarities shared with other rhizobia. Such a "patched" genetic composition has obviously imposed severe restrictions to the classical taxonomy of these rhizobia. In this work we summarize the accumulated knowledge about the Oregon-like rhizobia and present a phylogenetic analysis based on genome sequence data of Rhizobium sp. LPU83 obtained by a high-throughput sequencing on the Genome Sequencer FLX Titanium platform. The accessibility of the complete genomic sequence will release up more experimental possibilities since this information will then enable biochemical studies as well as proteomics and transcriptomics approaches. (C) 2011 Elsevier B. V. All rights reserved.
Stichworte
Rhizobia;
Acid-tolerant;
Broad-host-range;
Alfalfa
Erscheinungsjahr
2011
Zeitschriftentitel
Journal of Biotechnology
Band
155
Ausgabe
1
Seite(n)
3-10
ISSN
0168-1656
Page URI
https://pub.uni-bielefeld.de/record/2326465
Zitieren
Torres Tejerizo G, Florencia Del Papa M, Draghi W, et al. First genomic analysis of the broad-host-range Rhizobium sp LPU83 strain, a member of the low-genetic diversity Oregon-like Rhizobium sp group. Journal of Biotechnology. 2011;155(1):3-10.
Torres Tejerizo, G., Florencia Del Papa, M., Draghi, W., Lozano, M., de los Angeles Giusti, M., Martini, C., Eugenia Salas, M., et al. (2011). First genomic analysis of the broad-host-range Rhizobium sp LPU83 strain, a member of the low-genetic diversity Oregon-like Rhizobium sp group. Journal of Biotechnology, 155(1), 3-10. https://doi.org/10.1016/j.jbiotec.2011.01.011
Torres Tejerizo, Gonzalo, Florencia Del Papa, Maria, Draghi, Walter, Lozano, Mauricio, de los Angeles Giusti, Maria, Martini, Carla, Eugenia Salas, Maria, et al. 2011. “First genomic analysis of the broad-host-range Rhizobium sp LPU83 strain, a member of the low-genetic diversity Oregon-like Rhizobium sp group”. Journal of Biotechnology 155 (1): 3-10.
Torres Tejerizo, G., Florencia Del Papa, M., Draghi, W., Lozano, M., de los Angeles Giusti, M., Martini, C., Eugenia Salas, M., Salto, I., Wibberg, D., Szczepanowski, R., et al. (2011). First genomic analysis of the broad-host-range Rhizobium sp LPU83 strain, a member of the low-genetic diversity Oregon-like Rhizobium sp group. Journal of Biotechnology 155, 3-10.
Torres Tejerizo, G., et al., 2011. First genomic analysis of the broad-host-range Rhizobium sp LPU83 strain, a member of the low-genetic diversity Oregon-like Rhizobium sp group. Journal of Biotechnology, 155(1), p 3-10.
G. Torres Tejerizo, et al., “First genomic analysis of the broad-host-range Rhizobium sp LPU83 strain, a member of the low-genetic diversity Oregon-like Rhizobium sp group”, Journal of Biotechnology, vol. 155, 2011, pp. 3-10.
Torres Tejerizo, G., Florencia Del Papa, M., Draghi, W., Lozano, M., de los Angeles Giusti, M., Martini, C., Eugenia Salas, M., Salto, I., Wibberg, D., Szczepanowski, R., Weidner, S., Schlüter, A., Lagares, A., Pistorio, M.: First genomic analysis of the broad-host-range Rhizobium sp LPU83 strain, a member of the low-genetic diversity Oregon-like Rhizobium sp group. Journal of Biotechnology. 155, 3-10 (2011).
Torres Tejerizo, Gonzalo, Florencia Del Papa, Maria, Draghi, Walter, Lozano, Mauricio, de los Angeles Giusti, Maria, Martini, Carla, Eugenia Salas, Maria, Salto, Ileana, Wibberg, Daniel, Szczepanowski, Rafael, Weidner, Stefan, Schlüter, Andreas, Lagares, Antonio, and Pistorio, Mariano. “First genomic analysis of the broad-host-range Rhizobium sp LPU83 strain, a member of the low-genetic diversity Oregon-like Rhizobium sp group”. Journal of Biotechnology 155.1 (2011): 3-10.
Daten bereitgestellt von European Bioinformatics Institute (EBI)
UNIPROT
7 Einträge gefunden, die diesen Artikel zitieren
DNA-directed RNA polymerase subunit beta (UNIPROT: H6UEQ8)
Organism: Rhizobium sp. LPU83
Download in FASTA format
Organism: Rhizobium sp. LPU83
Download in FASTA format
EMBL
7 Einträge gefunden, die diesen Artikel zitieren
Rhizobium sp. LPU83 GyrB (gyrB) gene, complete cds. (EMBL: JN636820)
Sequence length: 2436
Download in FASTA format
Sequence length: 2436
Download in FASTA format
Rhizobium sp. LPU83 GltA (gltA) gene, complete cds. (EMBL: JN636823)
Sequence length: 1290
Download in FASTA format
Sequence length: 1290
Download in FASTA format
Rhizobium sp. LPU83 DnaK (dnaK) gene, complete cds. (EMBL: JN636821)
Sequence length: 1917
Download in FASTA format
Sequence length: 1917
Download in FASTA format
Rhizobium sp. LPU83 RpoB (rpoB) gene, complete cds. (EMBL: JN636818)
Sequence length: 4140
Download in FASTA format
Sequence length: 4140
Download in FASTA format
Rhizobium sp. LPU83 ThrC (thrC) gene, complete cds. (EMBL: JN636819)
Sequence length: 1401
Download in FASTA format
Sequence length: 1401
Download in FASTA format
Rhizobium sp. LPU83 RecA (recA) gene, complete cds. (EMBL: JN636817)
Sequence length: 1086
Download in FASTA format
Sequence length: 1086
Download in FASTA format
Rhizobium sp. LPU83 GlnA (glnA) gene, complete cds. (EMBL: JN636822)
Sequence length: 1410
Download in FASTA format
Sequence length: 1410
Download in FASTA format
8 Zitationen in Europe PMC
Daten bereitgestellt von Europe PubMed Central.
Genome Sequence of the Symbiotic Type Strain Rhizobium tibeticum CCBAU85039T.
Torres Tejerizo G, Wibberg D, Winkler A, Ormeño-Orrillo E, Martínez-Romero E, Niehaus K, Pühler A, Kalinowski J, Lagares A, Schlüter A, Pistorio M., Genome Announc 5(4), 2017
PMID: 28126941
Torres Tejerizo G, Wibberg D, Winkler A, Ormeño-Orrillo E, Martínez-Romero E, Niehaus K, Pühler A, Kalinowski J, Lagares A, Schlüter A, Pistorio M., Genome Announc 5(4), 2017
PMID: 28126941
Regulation of conjugative transfer of plasmids and integrative conjugative elements.
Bañuelos-Vazquez LA, Torres Tejerizo G, Brom S., Plasmid 91(), 2017
PMID: 28438469
Bañuelos-Vazquez LA, Torres Tejerizo G, Brom S., Plasmid 91(), 2017
PMID: 28438469
Characterization of Rhizobium grahamii extrachromosomal replicons and their transfer among rhizobia.
Althabegoiti MJ, Ormeño-Orrillo E, Lozano L, Torres Tejerizo G, Rogel MA, Mora J, Martínez-Romero E., BMC Microbiol 14(), 2014
PMID: 24397311
Althabegoiti MJ, Ormeño-Orrillo E, Lozano L, Torres Tejerizo G, Rogel MA, Mora J, Martínez-Romero E., BMC Microbiol 14(), 2014
PMID: 24397311
Genome sequence of the acid-tolerant strain Rhizobium sp. LPU83.
Wibberg D, Tejerizo GT, Del Papa MF, Martini C, Pühler A, Lagares A, Schlüter A, Pistorio M., J Biotechnol 176(), 2014
PMID: 24556327
Wibberg D, Tejerizo GT, Del Papa MF, Martini C, Pühler A, Lagares A, Schlüter A, Pistorio M., J Biotechnol 176(), 2014
PMID: 24556327
Rhizobial plasmid pLPU83a is able to switch between different transfer machineries depending on its genomic background.
Torres Tejerizo G, Pistorio M, Althabegoiti MJ, Cervantes L, Wibberg D, Schlüter A, Pühler A, Lagares A, Romero D, Brom S., FEMS Microbiol Ecol 88(3), 2014
PMID: 24646299
Torres Tejerizo G, Pistorio M, Althabegoiti MJ, Cervantes L, Wibberg D, Schlüter A, Pühler A, Lagares A, Romero D, Brom S., FEMS Microbiol Ecol 88(3), 2014
PMID: 24646299
Diversity of rhizobia associated with leguminous trees growing in South Korea.
Kang JW, Song J, Doty SL, Lee DK., J Basic Microbiol 53(3), 2013
PMID: 22733456
Kang JW, Song J, Doty SL, Lee DK., J Basic Microbiol 53(3), 2013
PMID: 22733456
Salivary proteomics in biomedical research.
Zhang A, Sun H, Wang P, Wang X., Clin Chim Acta 415(), 2013
PMID: 23146870
Zhang A, Sun H, Wang P, Wang X., Clin Chim Acta 415(), 2013
PMID: 23146870
rptA, a novel gene from Ensifer (Sinorhizobium) meliloti involved in conjugal transfer.
Pistorio M, Torres Tejerizo GA, Del Papa MF, Giusti Mde L, Lozano M, Lagares A., FEMS Microbiol Lett 345(1), 2013
PMID: 23672494
Pistorio M, Torres Tejerizo GA, Del Papa MF, Giusti Mde L, Lozano M, Lagares A., FEMS Microbiol Lett 345(1), 2013
PMID: 23672494
References
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