Deep Sequencing Analysis Reveals the Mycoviral Diversity of the Virome of an Avirulent Isolate of Rhizoctonia solani AG-2-2 IV
Bartholomaeus A, Wibberg D, Winkler A, Pühler A, Schlüter A, Varrelmann M (2016)
PLOS ONE 11(11): e0165965.
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Autor*in
Bartholomaeus, Anika;
Wibberg, DanielUniBi;
Winkler, AnikaUniBi;
Pühler, AlfredUniBi ;
Schlüter, AndreasUniBi ;
Varrelmann, Mark
Abstract / Bemerkung
Rhizoctonia solani represents an important plant pathogenic Basidiomycota species complex and the host of many different mycoviruses, as indicated by frequent detection of dsRNA elements in natural populations of the fungus. To date, eight different mycoviruses have been characterized in Rhizoctonia and some of them have been reported to modulate its virulence. DsRNA extracts of the avirulent R. solani isolate DC17 (AG2-2-IV) displayed a diverse pattern, indicating multiple infections with mycoviruses. Deep sequencing analysis of the dsRNA extract, converted to cDNA, revealed that this isolate harbors at least 17 different mycovirus species. Based on the alignment of the conserved RNA-dependent RNApolymerase (RdRp) domain, this viral community included putative members of the families Narnaviridae, Endornaviridae, Partitiviridae and Megabirnaviridae as well as of the order Tymovirales. Furthermore, viruses, which could not be assigned to any existing family or order, but showed similarities to so far unassigned species like Sclerotinia sclerotiorum RNA virus L, Rhizoctonia solani dsRNA virus 1, Aspergillus foetidus slow virus 2 or Rhizoctonia fumigata virus 1, were identified. This is the first report of a fungal isolate infected by 17 different viral species and a valuable study case to explore the diversity of mycoviruses infecting R. solani.
Erscheinungsjahr
2016
Zeitschriftentitel
PLOS ONE
Band
11
Ausgabe
11
Art.-Nr.
e0165965
Urheberrecht / Lizenzen
ISSN
1932-6203
eISSN
1932-6203
Page URI
https://pub.uni-bielefeld.de/record/2907431
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Bartholomaeus A, Wibberg D, Winkler A, Pühler A, Schlüter A, Varrelmann M. Deep Sequencing Analysis Reveals the Mycoviral Diversity of the Virome of an Avirulent Isolate of Rhizoctonia solani AG-2-2 IV. PLOS ONE. 2016;11(11): e0165965.
Bartholomaeus, A., Wibberg, D., Winkler, A., Pühler, A., Schlüter, A., & Varrelmann, M. (2016). Deep Sequencing Analysis Reveals the Mycoviral Diversity of the Virome of an Avirulent Isolate of Rhizoctonia solani AG-2-2 IV. PLOS ONE, 11(11), e0165965. doi:10.1371/journal.pone.0165965
Bartholomaeus, Anika, Wibberg, Daniel, Winkler, Anika, Pühler, Alfred, Schlüter, Andreas, and Varrelmann, Mark. 2016. “Deep Sequencing Analysis Reveals the Mycoviral Diversity of the Virome of an Avirulent Isolate of Rhizoctonia solani AG-2-2 IV”. PLOS ONE 11 (11): e0165965.
Bartholomaeus, A., Wibberg, D., Winkler, A., Pühler, A., Schlüter, A., and Varrelmann, M. (2016). Deep Sequencing Analysis Reveals the Mycoviral Diversity of the Virome of an Avirulent Isolate of Rhizoctonia solani AG-2-2 IV. PLOS ONE 11:e0165965.
Bartholomaeus, A., et al., 2016. Deep Sequencing Analysis Reveals the Mycoviral Diversity of the Virome of an Avirulent Isolate of Rhizoctonia solani AG-2-2 IV. PLOS ONE, 11(11): e0165965.
A. Bartholomaeus, et al., “Deep Sequencing Analysis Reveals the Mycoviral Diversity of the Virome of an Avirulent Isolate of Rhizoctonia solani AG-2-2 IV”, PLOS ONE, vol. 11, 2016, : e0165965.
Bartholomaeus, A., Wibberg, D., Winkler, A., Pühler, A., Schlüter, A., Varrelmann, M.: Deep Sequencing Analysis Reveals the Mycoviral Diversity of the Virome of an Avirulent Isolate of Rhizoctonia solani AG-2-2 IV. PLOS ONE. 11, : e0165965 (2016).
Bartholomaeus, Anika, Wibberg, Daniel, Winkler, Anika, Pühler, Alfred, Schlüter, Andreas, and Varrelmann, Mark. “Deep Sequencing Analysis Reveals the Mycoviral Diversity of the Virome of an Avirulent Isolate of Rhizoctonia solani AG-2-2 IV”. PLOS ONE 11.11 (2016): e0165965.
Daten bereitgestellt von European Bioinformatics Institute (EBI)
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Kozlakidis Z, Herrero N, Ozkan S, Bhatti MF, Coutts RH., Arch. Virol. 158(12), 2013
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A novel bipartite double-stranded RNA Mycovirus from the white root rot Fungus Rosellinia necatrix: molecular and biological characterization, taxonomic considerations, and potential for biological control.
Chiba S, Salaipeth L, Lin YH, Sasaki A, Kanematsu S, Suzuki N., J. Virol. 83(24), 2009
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Chiba S, Salaipeth L, Lin YH, Sasaki A, Kanematsu S, Suzuki N., J. Virol. 83(24), 2009
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Genome rearrangement of a mycovirus Rosellinia necatrix megabirnavirus 1 affecting its ability to attenuate virulence of the host fungus.
Kanematsu S, Shimizu T, Salaipeth L, Yaegashi H, Sasaki A, Ito T, Suzuki N., Virology 450-451(), 2014
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Kanematsu S, Shimizu T, Salaipeth L, Yaegashi H, Sasaki A, Ito T, Suzuki N., Virology 450-451(), 2014
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Vainio EJ, Jurvansuu J, Streng J, Rajamaki ML, Hantula J, Valkonen JP., J. Gen. Virol. 96(Pt 3), 2014
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Plant virus metagenomics: Advances in virus discovery
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Finding and identifying the viral needle in the metagenomic haystack: trends and challenges.
Soueidan H, Schmitt LA, Candresse T, Nikolski M., Front Microbiol 5(), 2014
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Dynamics of dsRNA mycoviruses in black Aspergillus populations
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dsRNA mycovirus causes hypovirulence of Fusarium graminearum to wheat and maize
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Methods for virus classification and the challenge of incorporating metagenomic sequence data.
Simmonds P., J. Gen. Virol. 96(Pt 6), 2015
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Simmonds P., J. Gen. Virol. 96(Pt 6), 2015
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Association of distinct double-stranded RNAs with enhanced or diminished virulence in Rhizoctonia solani infecting potato
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Characterization of a new megabirnavirus that confers hypovirulence with the aid of a co-infecting partitivirus to the host fungus, Rosellinia necatrix.
Sasaki A, Nakamura H, Suzuki N, Kanematsu S., Virus Res. 219(), 2015
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Sasaki A, Nakamura H, Suzuki N, Kanematsu S., Virus Res. 219(), 2015
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Characterization of a Novel Megabirnavirus from Sclerotinia sclerotiorum Reveals Horizontal Gene Transfer from Single-Stranded RNA Virus to Double-Stranded RNA Virus.
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Wang M, Wang Y, Sun X, Cheng J, Fu Y, Liu H, Jiang D, Ghabrial SA, Xie J., J. Virol. 89(16), 2015
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Multiple approaches for the detection and characterization of viral and plasmid symbionts from a collection of marine fungi.
Nerva L, Ciuffo M, Vallino M, Margaria P, Varese GC, Gnavi G, Turina M., Virus Res. 219(), 2015
PMID: 26546154
Nerva L, Ciuffo M, Vallino M, Margaria P, Varese GC, Gnavi G, Turina M., Virus Res. 219(), 2015
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Hypovirulence of chestnut blight fungus conferred by an infectious viral cDNA.
Choi GH, Nuss DL., Science 257(5071), 1992
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Choi GH, Nuss DL., Science 257(5071), 1992
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Mycoviruses related to chrysovirus affect vegetative growth in the rice blast fungus Magnaporthe oryzae.
Urayama S, Kato S, Suzuki Y, Aoki N, Le MT, Arie T, Teraoka T, Fukuhara T, Moriyama H., J. Gen. Virol. 91(Pt 12), 2010
PMID: 20797967
Urayama S, Kato S, Suzuki Y, Aoki N, Le MT, Arie T, Teraoka T, Fukuhara T, Moriyama H., J. Gen. Virol. 91(Pt 12), 2010
PMID: 20797967
Extending the fungal host range of a partitivirus and a mycoreovirus from Rosellinia necatrix by inoculation of protoplasts with virus particles
AUTHOR UNKNOWN, 2010
AUTHOR UNKNOWN, 2010
Changes in the mycovirus (LeV) titer and viral effect on the vegetative growth of the edible mushroom Lentinula edodes.
Kim JM, Song HY, Choi HJ, Yun SH, So KK, Ko HK, Kim DH., Virus Res. 197(), 2014
PMID: 25445339
Kim JM, Song HY, Choi HJ, Yun SH, So KK, Ko HK, Kim DH., Virus Res. 197(), 2014
PMID: 25445339
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