Draft whole genome sequence of the cyanide-degrading bacterium Pseudomonas pseudoalcaligenes CECT5344
Luque-Almagro VM, Acera F, Igeño MI, Wibberg D, Roldán MD, Sáez LP, Hennig M, Quesada A, Huertas MJ, Blom J, Merchán F, et al. (2013)
Environmental Microbiology 15(1): 253-270.
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Autor*in
Luque-Almagro, Víctor M;
Acera, Felipe;
Igeño, Ma Isabel;
Wibberg, DanielUniBi;
Roldán, Ma Dolores;
Sáez, Lara P;
Hennig, Magdalena;
Quesada, Alberto;
Huertas, Ma José;
Blom, JochenUniBi;
Merchán, Faustino;
Escribano, Ma Paz
Alle
Alle
Einrichtung
Centrum für Biotechnologie > Technologieplattformen > Bioinformatics Resource Facility
Technische Fakultät > Computational Genomics
Centrum für Biotechnologie > Graduate Center > Graduate Cluster Industrial Biotechnology
Centrum für Biotechnologie > Arbeitsgruppe A. Goesmann
Centrum für Biotechnologie > Arbeitsgruppe A. Pühler
Technische Fakultät > AG Genominformatik
Centrum für Biotechnologie > Arbeitsgruppe J. Stoye
Technische Fakultät > Computational Genomics
Centrum für Biotechnologie > Graduate Center > Graduate Cluster Industrial Biotechnology
Centrum für Biotechnologie > Arbeitsgruppe A. Goesmann
Centrum für Biotechnologie > Arbeitsgruppe A. Pühler
Technische Fakultät > AG Genominformatik
Centrum für Biotechnologie > Arbeitsgruppe J. Stoye
Abstract / Bemerkung
Pseudomonas pseudoalcaligenes CECT5344 is a Gram-negative bacterium able to tolerate cyanide and to use it as the sole nitrogen source. We report here the first draft of the whole genome sequence of a P. pseudoalcaligenes strain that assimilates cyanide. Three aspects are specially emphasized in this manuscript. First, some generalities of the genome are shown and discussed in the context of other Pseudomonadaceae genomes, including genome size, G + C content, core genome and singletons among other features. Second, the genome is analysed in the context of cyanide metabolism, describing genes probably involved in cyanide assimilation, like those encoding nitrilases, and genes related to cyanide resistance, like the cio genes encoding the cyanide insensitive oxidases. Finally, the presence of genes probably involved in other processes with a great biotechnological potential like production of bioplastics and biodegradation of pollutants also is discussed.
Erscheinungsjahr
2013
Zeitschriftentitel
Environmental Microbiology
Band
15
Ausgabe
1
Seite(n)
253-270
ISSN
1462-2912
Page URI
https://pub.uni-bielefeld.de/record/2548286
Zitieren
Luque-Almagro VM, Acera F, Igeño MI, et al. Draft whole genome sequence of the cyanide-degrading bacterium Pseudomonas pseudoalcaligenes CECT5344. Environmental Microbiology. 2013;15(1):253-270.
Luque-Almagro, V. M., Acera, F., Igeño, M. I., Wibberg, D., Roldán, M. D., Sáez, L. P., Hennig, M., et al. (2013). Draft whole genome sequence of the cyanide-degrading bacterium Pseudomonas pseudoalcaligenes CECT5344. Environmental Microbiology, 15(1), 253-270. doi:10.1111/j.1462-2920.2012.02875.x
Luque-Almagro, Víctor M, Acera, Felipe, Igeño, Ma Isabel, Wibberg, Daniel, Roldán, Ma Dolores, Sáez, Lara P, Hennig, Magdalena, et al. 2013. “Draft whole genome sequence of the cyanide-degrading bacterium Pseudomonas pseudoalcaligenes CECT5344”. Environmental Microbiology 15 (1): 253-270.
Luque-Almagro, V. M., Acera, F., Igeño, M. I., Wibberg, D., Roldán, M. D., Sáez, L. P., Hennig, M., Quesada, A., Huertas, M. J., Blom, J., et al. (2013). Draft whole genome sequence of the cyanide-degrading bacterium Pseudomonas pseudoalcaligenes CECT5344. Environmental Microbiology 15, 253-270.
Luque-Almagro, V.M., et al., 2013. Draft whole genome sequence of the cyanide-degrading bacterium Pseudomonas pseudoalcaligenes CECT5344. Environmental Microbiology, 15(1), p 253-270.
V.M. Luque-Almagro, et al., “Draft whole genome sequence of the cyanide-degrading bacterium Pseudomonas pseudoalcaligenes CECT5344”, Environmental Microbiology, vol. 15, 2013, pp. 253-270.
Luque-Almagro, V.M., Acera, F., Igeño, M.I., Wibberg, D., Roldán, M.D., Sáez, L.P., Hennig, M., Quesada, A., Huertas, M.J., Blom, J., Merchán, F., Escribano, M.P., Jaenicke, S., Estepa, J., Guijo, M.I., Martínez-Luque, M., Macías, D., Szczepanowski, R., Becerra, G., Ramirez, S., Carmona, M.I., Gutiérrez, O., Manso, I., Pühler, A., Castillo, F., Moreno-Vivián, C., Schlüter, A., Blasco, R.: Draft whole genome sequence of the cyanide-degrading bacterium Pseudomonas pseudoalcaligenes CECT5344. Environmental Microbiology. 15, 253-270 (2013).
Luque-Almagro, Víctor M, Acera, Felipe, Igeño, Ma Isabel, Wibberg, Daniel, Roldán, Ma Dolores, Sáez, Lara P, Hennig, Magdalena, Quesada, Alberto, Huertas, Ma José, Blom, Jochen, Merchán, Faustino, Escribano, Ma Paz, Jaenicke, Sebastian, Estepa, Jessica, Guijo, Ma Isabel, Martínez-Luque, Manuel, Macías, Daniel, Szczepanowski, Rafael, Becerra, Gracia, Ramirez, Silvia, Carmona, Ma Isabel, Gutiérrez, Oscar, Manso, Isabel, Pühler, Alfred, Castillo, Francisco, Moreno-Vivián, Conrado, Schlüter, Andreas, and Blasco, Rafael. “Draft whole genome sequence of the cyanide-degrading bacterium Pseudomonas pseudoalcaligenes CECT5344”. Environmental Microbiology 15.1 (2013): 253-270.
Daten bereitgestellt von European Bioinformatics Institute (EBI)
13 Zitationen in Europe PMC
Daten bereitgestellt von Europe PubMed Central.
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