Complete genome sequence of the methanogenic neotype strain Methanobacterium formicicum MFT
Maus I, Stantscheff R, Wibberg D, Stolze Y, Winkler A, Pühler A, König H, Schlüter A (2014)
Journal of Biotechnology 192: 40-41.
Zeitschriftenaufsatz
| Veröffentlicht | Englisch
Download
Es wurden keine Dateien hochgeladen. Nur Publikationsnachweis!
Autor*in
Maus, IrenaUniBi;
Stantscheff, Robbin;
Wibberg, DanielUniBi;
Stolze, YvonneUniBi;
Winkler, AnikaUniBi;
Pühler, AlfredUniBi
;
König, Helmut;
Schlüter, AndreasUniBi ![](https://pub.uni-bielefeld.de/images/icon_orcid.png)
![](https://pub.uni-bielefeld.de/images/icon_orcid.png)
![](https://pub.uni-bielefeld.de/images/icon_orcid.png)
Einrichtung
Abstract / Bemerkung
The neotype strain Methanobacterium formicicum MFT (DSM1535), a hydrogenotrophic methanogenic Archaeon, was isolated from a domestic sewage sludge digestor in Urbana (IL, USA). Here, the complete genome sequence of the methanogen is reported. The genome is 2,478,074 bp in size, featuring a GC content of 41.23%. M. formicicum MFT encodes several genes predicted to be involved in adaptation to abiotic stress such as high osmolarity. The strain MFT is of biotechnological importance since M. formicicum strains are often found in production-scale biogas plants and it is suggested as a starter culture for the anaerobic biomethanation process. (C) 2014 Elsevier B.V. All rights reserved.
Stichworte
Biogas production;
Methanogenesis;
Compatible solute;
synthesis;
Inoculant culture
Erscheinungsjahr
2014
Zeitschriftentitel
Journal of Biotechnology
Band
192
Seite(n)
40-41
ISSN
0168-1656
Page URI
https://pub.uni-bielefeld.de/record/2717539
Zitieren
Maus I, Stantscheff R, Wibberg D, et al. Complete genome sequence of the methanogenic neotype strain Methanobacterium formicicum MFT. Journal of Biotechnology. 2014;192:40-41.
Maus, I., Stantscheff, R., Wibberg, D., Stolze, Y., Winkler, A., Pühler, A., König, H., et al. (2014). Complete genome sequence of the methanogenic neotype strain Methanobacterium formicicum MFT. Journal of Biotechnology, 192, 40-41. doi:10.1016/j.jbiotec.2014.09.018
Maus, Irena, Stantscheff, Robbin, Wibberg, Daniel, Stolze, Yvonne, Winkler, Anika, Pühler, Alfred, König, Helmut, and Schlüter, Andreas. 2014. “Complete genome sequence of the methanogenic neotype strain Methanobacterium formicicum MFT”. Journal of Biotechnology 192: 40-41.
Maus, I., Stantscheff, R., Wibberg, D., Stolze, Y., Winkler, A., Pühler, A., König, H., and Schlüter, A. (2014). Complete genome sequence of the methanogenic neotype strain Methanobacterium formicicum MFT. Journal of Biotechnology 192, 40-41.
Maus, I., et al., 2014. Complete genome sequence of the methanogenic neotype strain Methanobacterium formicicum MFT. Journal of Biotechnology, 192, p 40-41.
I. Maus, et al., “Complete genome sequence of the methanogenic neotype strain Methanobacterium formicicum MFT”, Journal of Biotechnology, vol. 192, 2014, pp. 40-41.
Maus, I., Stantscheff, R., Wibberg, D., Stolze, Y., Winkler, A., Pühler, A., König, H., Schlüter, A.: Complete genome sequence of the methanogenic neotype strain Methanobacterium formicicum MFT. Journal of Biotechnology. 192, 40-41 (2014).
Maus, Irena, Stantscheff, Robbin, Wibberg, Daniel, Stolze, Yvonne, Winkler, Anika, Pühler, Alfred, König, Helmut, and Schlüter, Andreas. “Complete genome sequence of the methanogenic neotype strain Methanobacterium formicicum MFT”. Journal of Biotechnology 192 (2014): 40-41.
Daten bereitgestellt von European Bioinformatics Institute (EBI)
7 Zitationen in Europe PMC
Daten bereitgestellt von Europe PubMed Central.
Genome sequence of Methanobacterium congolense strain Buetzberg, a hydrogenotrophic, methanogenic archaeon, isolated from a mesophilic industrial-scale biogas plant utilizing bio-waste.
Tejerizo GT, Kim YS, Maus I, Wibberg D, Winkler A, Off S, Pühler A, Scherer P, Schlüter A., J Biotechnol 247(), 2017
PMID: 28216101
Tejerizo GT, Kim YS, Maus I, Wibberg D, Winkler A, Off S, Pühler A, Scherer P, Schlüter A., J Biotechnol 247(), 2017
PMID: 28216101
Genomics and prevalence of bacterial and archaeal isolates from biogas-producing microbiomes.
Maus I, Bremges A, Stolze Y, Hahnke S, Cibis KG, Koeck DE, Kim YS, Kreubel J, Hassa J, Wibberg D, Weimann A, Off S, Stantscheff R, Zverlov VV, Schwarz WH, König H, Liebl W, Scherer P, McHardy AC, Sczyrba A, Klocke M, Pühler A, Schlüter A., Biotechnol Biofuels 10(), 2017
PMID: 29158776
Maus I, Bremges A, Stolze Y, Hahnke S, Cibis KG, Koeck DE, Kim YS, Kreubel J, Hassa J, Wibberg D, Weimann A, Off S, Stantscheff R, Zverlov VV, Schwarz WH, König H, Liebl W, Scherer P, McHardy AC, Sczyrba A, Klocke M, Pühler A, Schlüter A., Biotechnol Biofuels 10(), 2017
PMID: 29158776
Control of sulfide and methane production in anaerobic sewer systems by means of Downstream Nitrite Dosage.
Auguet O, Pijuan M, Borrego CM, Gutierrez O., Sci Total Environ 550(), 2016
PMID: 26871557
Auguet O, Pijuan M, Borrego CM, Gutierrez O., Sci Total Environ 550(), 2016
PMID: 26871557
Integration event induced changes in recombinant protein productivity in Pichia pastoris discovered by whole genome sequencing and derived vector optimization.
Schwarzhans JP, Wibberg D, Winkler A, Luttermann T, Kalinowski J, Friehs K., Microb Cell Fact 15(), 2016
PMID: 27206580
Schwarzhans JP, Wibberg D, Winkler A, Luttermann T, Kalinowski J, Friehs K., Microb Cell Fact 15(), 2016
PMID: 27206580
An assemblage of Frankia Cluster II strains from California contains the canonical nod genes and also the sulfotransferase gene nodH.
Nguyen TV, Wibberg D, Battenberg K, Blom J, Vanden Heuvel B, Berry AM, Kalinowski J, Pawlowski K., BMC Genomics 17(1), 2016
PMID: 27729005
Nguyen TV, Wibberg D, Battenberg K, Blom J, Vanden Heuvel B, Berry AM, Kalinowski J, Pawlowski K., BMC Genomics 17(1), 2016
PMID: 27729005
acdc - Automated Contamination Detection and Confidence estimation for single-cell genome data.
Lux M, Krüger J, Rinke C, Maus I, Schlüter A, Woyke T, Sczyrba A, Hammer B., BMC Bioinformatics 17(1), 2016
PMID: 27998267
Lux M, Krüger J, Rinke C, Maus I, Schlüter A, Woyke T, Sczyrba A, Hammer B., BMC Bioinformatics 17(1), 2016
PMID: 27998267
Complete genome sequence of the strain Defluviitoga tunisiensis L3, isolated from a thermophilic, production-scale biogas plant.
Maus I, Cibis KG, Wibberg D, Winkler A, Stolze Y, König H, Pühler A, Schlüter A., J Biotechnol 203(), 2015
PMID: 25801333
Maus I, Cibis KG, Wibberg D, Winkler A, Stolze Y, König H, Pühler A, Schlüter A., J Biotechnol 203(), 2015
PMID: 25801333
19 References
Daten bereitgestellt von Europe PubMed Central.
Isolation and characterization of Methanobacterium forrnicicum MF
Bryant, Appl. Environ. Microbiol. 54(3), 1987
Bryant, Appl. Environ. Microbiol. 54(3), 1987
Acetyl-CoA decarbonylase/synthase complex from Archaeoglobus fulgidus.
Dai YR, Reed DW, Millstein JH, Hartzell PL, Grahame DA, DeMoll E., Arch. Microbiol. 169(6), 1998
PMID: 9575239
Dai YR, Reed DW, Millstein JH, Hartzell PL, Grahame DA, DeMoll E., Arch. Microbiol. 169(6), 1998
PMID: 9575239
Medium number 287: Methanogenium olentangyi medium
DSMZ, 2007
DSMZ, 2007
Bioaugmentation with an acetate-oxidising consortium as a tool to tackle ammonia inhibition of anaerobic digestion.
Fotidis IA, Karakashev D, Angelidaki I., Bioresour. Technol. 146(), 2013
PMID: 23916979
Fotidis IA, Karakashev D, Angelidaki I., Bioresour. Technol. 146(), 2013
PMID: 23916979
Draft genome sequence of the cellulolytic Clostridium thermocellum wild-type strain BC1 playing a role in cellulosic biomass degradation.
Koeck DE, Wibberg D, Koellmeier T, Blom J, Jaenicke S, Winkler A, Albersmeier A, Zverlov VV, Puhler A, Schwarz WH, Schluter A., J. Biotechnol. 168(1), 2013
PMID: 23968723
Koeck DE, Wibberg D, Koellmeier T, Blom J, Jaenicke S, Winkler A, Albersmeier A, Zverlov VV, Puhler A, Schwarz WH, Schluter A., J. Biotechnol. 168(1), 2013
PMID: 23968723
Complete genome sequence of the cellulolytic thermophile Ruminoclostridium cellulosi wild-type strain DG5 isolated from a thermophilic biogas plant.
Koeck DE, Wibberg D, Maus I, Winkler A, Albersmeier A, Zverlov VV, Liebl W, Puhler A, Schwarz WH, Schluter A., J. Biotechnol. 188(), 2014
PMID: 25173616
Koeck DE, Wibberg D, Maus I, Winkler A, Albersmeier A, Zverlov VV, Liebl W, Puhler A, Schwarz WH, Schluter A., J. Biotechnol. 188(), 2014
PMID: 25173616
Complete genome sequence of the hydrogenotrophic Archaeon Methanobacterium sp. Mb1 isolated from a production-scale biogas plant.
Maus I, Wibberg D, Stantscheff R, Cibis K, Eikmeyer FG, Konig H, Puhler A, Schluter A., J. Biotechnol. 168(4), 2013
PMID: 24184088
Maus I, Wibberg D, Stantscheff R, Cibis K, Eikmeyer FG, Konig H, Puhler A, Schluter A., J. Biotechnol. 168(4), 2013
PMID: 24184088
Complete genome sequence of the hydrogenotrophic, methanogenic archaeon Methanoculleus bourgensis strain MS2(T), Isolated from a sewage sludge digester.
Maus I, Wibberg D, Stantscheff R, Eikmeyer FG, Seffner A, Boelter J, Szczepanowski R, Blom J, Jaenicke S, Konig H, Puhler A, Schluter A., J. Bacteriol. 194(19), 2012
PMID: 22965103
Maus I, Wibberg D, Stantscheff R, Eikmeyer FG, Seffner A, Boelter J, Szczepanowski R, Blom J, Jaenicke S, Konig H, Puhler A, Schluter A., J. Bacteriol. 194(19), 2012
PMID: 22965103
GenDB--an open source genome annotation system for prokaryote genomes.
Meyer F, Goesmann A, McHardy AC, Bartels D, Bekel T, Clausen J, Kalinowski J, Linke B, Rupp O, Giegerich R, Puhler A., Nucleic Acids Res. 31(8), 2003
PMID: 12682369
Meyer F, Goesmann A, McHardy AC, Bartels D, Bekel T, Clausen J, Kalinowski J, Linke B, Rupp O, Giegerich R, Puhler A., Nucleic Acids Res. 31(8), 2003
PMID: 12682369
Stress response by solute accumulation in archaea.
Muller V, Spanheimer R, Santos H., Curr. Opin. Microbiol. 8(6), 2005
PMID: 16256422
Muller V, Spanheimer R, Santos H., Curr. Opin. Microbiol. 8(6), 2005
PMID: 16256422
AUTHOR UNKNOWN, 0
Microorganisms in landfill bioreactors for accelerated stabilization of solid wastes.
Sang NN, Soda S, Ishigaki T, Ike M., J. Biosci. Bioeng. 114(3), 2012
PMID: 22608549
Sang NN, Soda S, Ishigaki T, Ike M., J. Biosci. Bioeng. 114(3), 2012
PMID: 22608549
The metagenome of a biogas-producing microbial community of a production-scale biogas plant fermenter analysed by the 454-pyrosequencing technology?
Schlüter, J. Biotechnol. 136(1–2), 2008
Schlüter, J. Biotechnol. 136(1–2), 2008
AUTHOR UNKNOWN, 0
Syntrophomonas zehnderi sp. nov., an anaerobe that degrades long-chain fatty acids in co-culture with Methanobacterium formicicum.
Sousa DZ, Smidt H, Alves MM, Stams AJ., Int. J. Syst. Evol. Microbiol. 57(Pt 3), 2007
PMID: 17329794
Sousa DZ, Smidt H, Alves MM, Stams AJ., Int. J. Syst. Evol. Microbiol. 57(Pt 3), 2007
PMID: 17329794
Isolation and differentiation of methanogenic Archaea from mesophilic corn-fed on-farm biogas plants with special emphasis on the genus Methanobacterium.
Stantscheff R, Kuever J, Rabenstein A, Seyfarth K, Droge S, Konig H., Appl. Microbiol. Biotechnol. 98(12), 2014
PMID: 24639207
Stantscheff R, Kuever J, Rabenstein A, Seyfarth K, Droge S, Konig H., Appl. Microbiol. Biotechnol. 98(12), 2014
PMID: 24639207
Applications of starter cultures in the dairy industry
Tzeng, Dev. Ind. Microbiol. 16(), 1985
Tzeng, Dev. Ind. Microbiol. 16(), 1985
Complete genome sequencing of Agrobacterium sp. H13-3, the former Rhizobium lupini H13-3, reveals a tripartite genome consisting of a circular and a linear chromosome and an accessory plasmid but lacking a tumor-inducing Ti-plasmid.
Wibberg D, Blom J, Jaenicke S, Kollin F, Rupp O, Scharf B, Schneiker-Bekel S, Sczcepanowski R, Goesmann A, Setubal JC, Schmitt R, Puhler A, Schluter A., J. Biotechnol. 155(1), 2011
PMID: 21329740
Wibberg D, Blom J, Jaenicke S, Kollin F, Rupp O, Scharf B, Schneiker-Bekel S, Sczcepanowski R, Goesmann A, Setubal JC, Schmitt R, Puhler A, Schluter A., J. Biotechnol. 155(1), 2011
PMID: 21329740
AUTHOR UNKNOWN, 0
Export
Markieren/ Markierung löschen
Markierte Publikationen
Web of Science
Dieser Datensatz im Web of Science®Quellen
PMID: 25270020
PubMed | Europe PMC
Suchen in