Complete genome sequence of the cyanide-degrading bacterium Pseudomonas pseudoalcaligenes CECT5344

Wibberg D, Luque-Almagro VM, Igeño MI, Bremges A, Roldán MD, Merchán F, Sáez LP, Guijo MI, Manso MI, Macías D, Cabello P, et al. (2014)
Journal of biotechnology 175: 67-68.

Zeitschriftenaufsatz | Veröffentlicht | Englisch
 
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DOI
Autor*in
Wibberg, DanielUniBi; Luque-Almagro, Víctor M.; Igeño, M. Isabel; Bremges, AndreasUniBi ; Roldán, M. Dolores; Merchán, Faustino; Sáez, Lara P.; Guijo, M. Isabel; Manso, M. Isabel; Macías, Daniel; Cabello, Purificación; Becerra, Gracia
Alle
Einrichtung
Technische Fakultät > Int. Graduiertenkolleg DiDy (GRK 1906)
Centrum für Biotechnologie > Arbeitsgruppe A. Sczyrba
Centrum für Biotechnologie > Arbeitsgruppe A. Pühler
Technische Fakultät > Computational Metagenomics
Centrum für Biotechnologie > Graduate Center > Graduate Cluster Industrial Biotechnology
Abstract / Bemerkung
Pseudomonas pseudoalcaligenes CECT5344, a Gram-negative bacterium isolated from the Guadalquir River (Córdoba, Spain), is able to utilize different cyano-derivatives. Here, the complete genome sequence of P. pseudoalcaligenes CECT5344 harboring a 4,686,340bp circular chromosome encoding 4513 genes and featuring a GC-content of 62.34% is reported. Necessarily, remaining gaps in the genome had to be closed by assembly of few long reads obtained from PacBio single molecule real-time sequencing. Here, the first complete genome sequence for the species P. pseudoalcaligenes is presented.
Stichworte
Cyanide; Bioplastic; Cyanide assimilation; Nitrilase; Cyanide resistance
Erscheinungsjahr
2014
Zeitschriftentitel
Journal of biotechnology
Band
175
Seite(n)
67-68
ISSN
0168-1656
Page URI
https://pub.uni-bielefeld.de/record/2662055

Zitieren

Wibberg D, Luque-Almagro VM, Igeño MI, et al. Complete genome sequence of the cyanide-degrading bacterium Pseudomonas pseudoalcaligenes CECT5344. Journal of biotechnology. 2014;175:67-68.
Wibberg, D., Luque-Almagro, V. M., Igeño, M. I., Bremges, A., Roldán, M. D., Merchán, F., Sáez, L. P., et al. (2014). Complete genome sequence of the cyanide-degrading bacterium Pseudomonas pseudoalcaligenes CECT5344. Journal of biotechnology, 175, 67-68. doi:10.1016/j.jbiotec.2014.02.004
Wibberg, Daniel, Luque-Almagro, Víctor M., Igeño, M. Isabel, Bremges, Andreas, Roldán, M. Dolores, Merchán, Faustino, Sáez, Lara P., et al. 2014. “Complete genome sequence of the cyanide-degrading bacterium Pseudomonas pseudoalcaligenes CECT5344”. Journal of biotechnology 175: 67-68.
Wibberg, D., Luque-Almagro, V. M., Igeño, M. I., Bremges, A., Roldán, M. D., Merchán, F., Sáez, L. P., Guijo, M. I., Manso, M. I., Macías, D., et al. (2014). Complete genome sequence of the cyanide-degrading bacterium Pseudomonas pseudoalcaligenes CECT5344. Journal of biotechnology 175, 67-68.
Wibberg, D., et al., 2014. Complete genome sequence of the cyanide-degrading bacterium Pseudomonas pseudoalcaligenes CECT5344. Journal of biotechnology, 175, p 67-68.
D. Wibberg, et al., “Complete genome sequence of the cyanide-degrading bacterium Pseudomonas pseudoalcaligenes CECT5344”, Journal of biotechnology, vol. 175, 2014, pp. 67-68.
Wibberg, D., Luque-Almagro, V.M., Igeño, M.I., Bremges, A., Roldán, M.D., Merchán, F., Sáez, L.P., Guijo, M.I., Manso, M.I., Macías, D., Cabello, P., Becerra, G., Ibáñez, M.I., Carmona, M.I., Escribano, M.P., Castillo, F., Sczyrba, A., Moreno-Vivián, C., Blasco, R., Pühler, A., Schlüter, A.: Complete genome sequence of the cyanide-degrading bacterium Pseudomonas pseudoalcaligenes CECT5344. Journal of biotechnology. 175, 67-68 (2014).
Wibberg, Daniel, Luque-Almagro, Víctor M., Igeño, M. Isabel, Bremges, Andreas, Roldán, M. Dolores, Merchán, Faustino, Sáez, Lara P., Guijo, M. Isabel, Manso, M. Isabel, Macías, Daniel, Cabello, Purificación, Becerra, Gracia, Ibáñez, M. Isabel, Carmona, M. Isabel, Escribano, M. Paz, Castillo, Francisco, Sczyrba, Alexander, Moreno-Vivián, Conrado, Blasco, Rafael, Pühler, Alfred, and Schlüter, Andreas. “Complete genome sequence of the cyanide-degrading bacterium Pseudomonas pseudoalcaligenes CECT5344”. Journal of biotechnology 175 (2014): 67-68.

10 Zitationen in Europe PMC

Daten bereitgestellt von Europe PubMed Central.

Putative small RNAs controlling detoxification of industrial cyanide-containing wastewaters by Pseudomonas pseudoalcaligenes CECT5344.
Olaya-Abril A, Luque-Almagro VM, Pérez MD, López CM, Amil F, Cabello P, Sáez LP, Moreno-Vivián C, Roldán MD., PLoS One 14(2), 2019
PMID: 30735537
Cyanate Assimilation by the Alkaliphilic Cyanide-Degrading Bacterium Pseudomonas pseudoalcaligenes CECT5344: Mutational Analysis of the cyn Gene Cluster.
Sáez LP, Cabello P, Ibáñez MI, Luque-Almagro VM, Roldán MD, Moreno-Vivián C., Int J Mol Sci 20(12), 2019
PMID: 31226739
A Case of Adaptive Laboratory Evolution (ALE): Biodegradation of Furfural by Pseudomonas pseudoalcaligenes CECT 5344.
Igeño MI, Macias D, Blasco R., Genes (Basel) 10(7), 2019
PMID: 31261932
Assimilation of cyanide and cyano-derivatives by Pseudomonas pseudoalcaligenes CECT5344: from omic approaches to biotechnological applications.
Cabello P, Luque-Almagro VM, Olaya-Abril A, Sáez LP, Moreno-Vivián C, Roldán MD., FEMS Microbiol Lett 365(6), 2018
PMID: 29438505
Quantitative proteomic analysis of Pseudomonas pseudoalcaligenes CECT5344 in response to industrial cyanide-containing wastewaters using Liquid Chromatography-Mass Spectrometry/Mass Spectrometry (LC-MS/MS).
Ibáñez MI, Cabello P, Luque-Almagro VM, Sáez LP, Olaya A, Sánchez de Medina V, Luque de Castro MD, Moreno-Vivián C, Roldán MD., PLoS One 12(3), 2017
PMID: 28253357
Analysis of Draft Genome Sequence of Pseudomonas sp. QTF5 Reveals Its Benzoic Acid Degradation Ability and Heavy Metal Tolerance.
Li Y, Ren Y, Jiang N., Biomed Res Int 2017(), 2017
PMID: 29270429
Biodegradation of cyanide wastes from mining and jewellery industries.
Luque-Almagro VM, Moreno-Vivián C, Roldán MD., Curr Opin Biotechnol 38(), 2016
PMID: 26745356
Improved genome sequence of the phytopathogenic fungus Rhizoctonia solani AG1-IB 7/3/14 as established by deep mate-pair sequencing on the MiSeq (Illumina) system.
Wibberg D, Rupp O, Jelonek L, Kröber M, Verwaaijen B, Blom J, Winkler A, Goesmann A, Grosch R, Pühler A, Schlüter A., J Biotechnol 203(), 2015
PMID: 25801332
Pseudomonas pseudoalcaligenes CECT5344, a cyanide-degrading bacterium with by-product (polyhydroxyalkanoates) formation capacity.
Manso Cobos I, Ibáñez García MI, de la Peña Moreno F, Sáez Melero LP, Luque-Almagro VM, Castillo Rodríguez F, Roldán Ruiz MD, Prieto Jiménez MA, Moreno Vivián C., Microb Cell Fact 14(), 2015
PMID: 26055753
Complete Genome Sequence of Acinetobacter baumannii CIP 70.10, a Susceptible Reference Strain for Comparative Genome Analyses.
Krahn T, Wibberg D, Maus I, Winkler A, Pühler A, Poirel L, Schlüter A., Genome Announc 3(4), 2015
PMID: 26227605

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