Draft genome sequence of the sugar beet pathogen Rhizoctonia solani AG2-2IIIB strain BBA69670
Wibberg D, Andersson L, Rupp O, Goesmann A, Pühler A, Varrelmann M, Dixelius C, Schlüter A (2016)
Journal of Biotechnology 222: 11-12.
Zeitschriftenaufsatz
| Veröffentlicht | Englisch
Download
Es wurden keine Dateien hochgeladen. Nur Publikationsnachweis!
Autor*in
Wibberg, DanielUniBi;
Andersson, Louise;
Rupp, Oliver;
Goesmann, Alexander;
Pühler, AlfredUniBi 
;
Varrelmann, Mark;
Dixelius, Christina;
Schlüter, AndreasUniBi
;
Varrelmann, Mark;
Dixelius, Christina;
Schlüter, AndreasUniBi Abstract / Bemerkung
Rhizoctonia solani is a widespread plant pathogenic fungus featuring a broad host range including several economically important crops. Accordingly, genome analyses of R. solani isolates are important to uncover their pathogenic potential. Draft genome sequences for four R. solani isolates representing three of the 14 R. solani anastomosis groups (AGs) are available. Here, we present the first draft genome sequence for an R. solani AG2-2IIIB isolate that is pathogenic on sugar beet. The fungal genome was assembled in 2065 scaffolds consisting of 5826 contigs amounting to a size of about 52 Mb which is larger than any other R. solani isolate known today. Genes potentially encoding cellulolytic, lignolytic and pectinolytic enzymes were identified. (c) 2016 Elsevier B.V. All rights reserved.
Stichworte
Rhizoctonia solani AG2-2IIIB;
Plant pathogenic fungus;
Ultrafast;
sequencing;
AUGUSTUS
Erscheinungsjahr
2016
Zeitschriftentitel
Journal of Biotechnology
Band
222
Seite(n)
11-12
ISSN
0168-1656
eISSN
1873-4863
Page URI
https://pub.uni-bielefeld.de/record/2917142
Zitieren
Wibberg D, Andersson L, Rupp O, et al. Draft genome sequence of the sugar beet pathogen Rhizoctonia solani AG2-2IIIB strain BBA69670. Journal of Biotechnology. 2016;222:11-12.
Wibberg, D., Andersson, L., Rupp, O., Goesmann, A., Pühler, A., Varrelmann, M., Dixelius, C., et al. (2016). Draft genome sequence of the sugar beet pathogen Rhizoctonia solani AG2-2IIIB strain BBA69670. Journal of Biotechnology, 222, 11-12. doi:10.1016/j.jbiotec.2016.02.001
Wibberg, Daniel, Andersson, Louise, Rupp, Oliver, Goesmann, Alexander, Pühler, Alfred, Varrelmann, Mark, Dixelius, Christina, and Schlüter, Andreas. 2016. “Draft genome sequence of the sugar beet pathogen Rhizoctonia solani AG2-2IIIB strain BBA69670”. Journal of Biotechnology 222: 11-12.
Wibberg, D., Andersson, L., Rupp, O., Goesmann, A., Pühler, A., Varrelmann, M., Dixelius, C., and Schlüter, A. (2016). Draft genome sequence of the sugar beet pathogen Rhizoctonia solani AG2-2IIIB strain BBA69670. Journal of Biotechnology 222, 11-12.
Wibberg, D., et al., 2016. Draft genome sequence of the sugar beet pathogen Rhizoctonia solani AG2-2IIIB strain BBA69670. Journal of Biotechnology, 222, p 11-12.
D. Wibberg, et al., “Draft genome sequence of the sugar beet pathogen Rhizoctonia solani AG2-2IIIB strain BBA69670”, Journal of Biotechnology, vol. 222, 2016, pp. 11-12.
Wibberg, D., Andersson, L., Rupp, O., Goesmann, A., Pühler, A., Varrelmann, M., Dixelius, C., Schlüter, A.: Draft genome sequence of the sugar beet pathogen Rhizoctonia solani AG2-2IIIB strain BBA69670. Journal of Biotechnology. 222, 11-12 (2016).
Wibberg, Daniel, Andersson, Louise, Rupp, Oliver, Goesmann, Alexander, Pühler, Alfred, Varrelmann, Mark, Dixelius, Christina, and Schlüter, Andreas. “Draft genome sequence of the sugar beet pathogen Rhizoctonia solani AG2-2IIIB strain BBA69670”. Journal of Biotechnology 222 (2016): 11-12.
2 Zitationen in Europe PMC
Daten bereitgestellt von Europe PubMed Central.
Draft genome sequence of the potato pathogen Rhizoctonia solani AG3-PT isolate Ben3.
Wibberg D, Genzel F, Verwaaijen B, Blom J, Rupp O, Goesmann A, Zrenner R, Grosch R, Pühler A, Schlüter A., Arch Microbiol 199(7), 2017
PMID: 28597196
Wibberg D, Genzel F, Verwaaijen B, Blom J, Rupp O, Goesmann A, Zrenner R, Grosch R, Pühler A, Schlüter A., Arch Microbiol 199(7), 2017
PMID: 28597196
Transcriptome analysis reveals the host selection fitness mechanisms of the Rhizoctonia solani AG1IA pathogen.
Xia Y, Fei B, He J, Zhou M, Zhang D, Pan L, Li S, Liang Y, Wang L, Zhu J, Li P, Zheng A., Sci Rep 7(1), 2017
PMID: 28860554
Xia Y, Fei B, He J, Zhou M, Zhang D, Pan L, Li S, Liang Y, Wang L, Zhu J, Li P, Zheng A., Sci Rep 7(1), 2017
PMID: 28860554
11 References
Daten bereitgestellt von Europe PubMed Central.
The genetics and pathology of Rhizoctonia solani
Anderson, Annu. Rev. Phytopathol. 20(), 1982
Anderson, Annu. Rev. Phytopathol. 20(), 1982
Draft genome sequence of the plant-pathogenic soil fungus Rhizoctonia solani anastomosis group 3 strain Rhs1AP
Cubeta, Genome Announc. 2(), 2014
Cubeta, Genome Announc. 2(), 2014
Genome sequencing and comparative genomics of the broad host-range pathogen Rhizoctonia solani AG8
Hane, PLoS Genet. (), 2014
Hane, PLoS Genet. (), 2014
Susceptibility of intercrops to infection with Rhizoctonia solani AG 2-2 IIIB and influence on subsequently cultivated sugar beet
Kluth, Plant Pathol. 59(), 2010
Kluth, Plant Pathol. 59(), 2010
Ecology and pathogenicity of anastomosis and intraspecific groups of Rhizoctonia Solani Kuhn
Ogoshi, Annu. Rev. Phytopathol. 25(), 1987
Ogoshi, Annu. Rev. Phytopathol. 25(), 1987
Construction of a public CHO cell line transcript database using versatile bioinformatics analysis pipelines
Rupp, PLoS One (), 2014
Rupp, PLoS One (), 2014
Establishment and interpretation of the genome sequence of the phytopathogenic fungus Rhizoctonia solani AG1-IB isolate 7/3/14.
Wibberg D, Jelonek L, Rupp O, Hennig M, Eikmeyer F, Goesmann A, Hartmann A, Borriss R, Grosch R, Puhler A, Schluter A., J. Biotechnol. 167(2), 2012
PMID: 23280342
Wibberg D, Jelonek L, Rupp O, Hennig M, Eikmeyer F, Goesmann A, Hartmann A, Borriss R, Grosch R, Puhler A, Schluter A., J. Biotechnol. 167(2), 2012
PMID: 23280342
Transcriptome analysis of the phytopathogenic fungus Rhizoctonia solani AG1-IB 7/3/14 applying high-throughput sequencing of expressed sequence tags (ESTs).
Wibberg D, Jelonek L, Rupp O, Krober M, Goesmann A, Grosch R, Puhler A, Schluter A., Fungal Biol 118(9-10), 2014
PMID: 25209639
Wibberg D, Jelonek L, Rupp O, Krober M, Goesmann A, Grosch R, Puhler A, Schluter A., Fungal Biol 118(9-10), 2014
PMID: 25209639
Development of a Rhizoctonia solani AG1-IB specific gene model enables comparative genome analyses between the phytopathogenic R. solani AG1-IA, AG1-IB, AG3 and AG8 isolates
Wibberg, PLoS One (), 2015
Wibberg, PLoS One (), 2015
Improved genome sequence of the phytopathogenic fungus Rhizoctonia solani AG1-IB 7/3/14 as established by deep mate-pair sequencing on the MiSeq (Illumina) system.
Wibberg D, Rupp O, Jelonek L, Krober M, Verwaaijen B, Blom J, Winkler A, Goesmann A, Grosch R, Puhler A, Schluter A., J. Biotechnol. 203(), 2015
PMID: 25801332
Wibberg D, Rupp O, Jelonek L, Krober M, Verwaaijen B, Blom J, Winkler A, Goesmann A, Grosch R, Puhler A, Schluter A., J. Biotechnol. 203(), 2015
PMID: 25801332
The evolution and pathogenic mechanisms of the rice sheath blight pathogen.
Zheng A, Lin R, Zhang D, Qin P, Xu L, Ai P, Ding L, Wang Y, Chen Y, Liu Y, Sun Z, Feng H, Liang X, Fu R, Tang C, Li Q, Zhang J, Xie Z, Deng Q, Li S, Wang S, Zhu J, Wang L, Liu H, Li P., Nat Commun 4(), 2013
PMID: 23361014
Zheng A, Lin R, Zhang D, Qin P, Xu L, Ai P, Ding L, Wang Y, Chen Y, Liu Y, Sun Z, Feng H, Liang X, Fu R, Tang C, Li Q, Zhang J, Xie Z, Deng Q, Li S, Wang S, Zhu J, Wang L, Liu H, Li P., Nat Commun 4(), 2013
PMID: 23361014
Export
Markieren/ Markierung löschen
Markierte Publikationen
Web of Science
Dieser Datensatz im Web of Science®Quellen
PMID: 26851388
PubMed | Europe PMC
Suchen in
Google Scholar