Improved genome sequence of the phytopathogenic fungus Rhizoctonia solani AG1-IB 7/3/14 as established by deep mate-pair sequencing on the MiSeq (Illumina) system
Wibberg D, Rupp O, Jelonek L, Kröber M, Verwaaijen B, Blom J, Winkler A, Goesmann A, Grosch R, Pühler A, Schlüter A (2015)
Journal of Biotechnology 203: 19-21.
Zeitschriftenaufsatz
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Autor*in
Wibberg, DanielUniBi;
Rupp, Oliver;
Jelonek, Lukas;
Kröber, MagdalenaUniBi;
Verwaaijen, BartUniBi;
Blom, Jochen;
Winkler, AnikaUniBi;
Goesmann, Alexander;
Grosch, Rita;
Pühler, AlfredUniBi 
;
Schlüter, AndreasUniBi
;
Schlüter, AndreasUniBi Einrichtung
Abstract / Bemerkung
The phytopathogenic fungus Rhizoctonia solani AG1-IB of the phylum Basidiomycota affects various economically important crops comprising bean, rice, soybean, figs, cabbage and lettuce. The R. solani isolate 7/3/14 of the anastomosis group AG1-IB was deeply resequenced on the Illumina MiSeq system applying the mate-pair mode to improve its genome sequence. Assembly of obtained sequence reads significantly reduced the amount of scaffolds and improved the genome sequence of the isolate compared to the previous sequencing approach. The genome sequence of the AG1-IB isolate 7/3/14 now provides an up-graded basis to analyze genome features predicted to play a role in pathogenesis and for the development of strategies to antagonize the pathogenic impact of this fungus. (C) 2015 Elsevier B.V. All rights reserved.
Stichworte
AUGUSTUS;
sequencing;
Ultrafast;
Rhizoctonia solani AG1-IB;
Plant pathogenic fungus
Erscheinungsjahr
2015
Zeitschriftentitel
Journal of Biotechnology
Band
203
Seite(n)
19-21
ISSN
0168-1656
Page URI
https://pub.uni-bielefeld.de/record/2758144
Zitieren
Wibberg D, Rupp O, Jelonek L, et al. Improved genome sequence of the phytopathogenic fungus Rhizoctonia solani AG1-IB 7/3/14 as established by deep mate-pair sequencing on the MiSeq (Illumina) system. Journal of Biotechnology. 2015;203:19-21.
Wibberg, D., Rupp, O., Jelonek, L., Kröber, M., Verwaaijen, B., Blom, J., Winkler, A., et al. (2015). Improved genome sequence of the phytopathogenic fungus Rhizoctonia solani AG1-IB 7/3/14 as established by deep mate-pair sequencing on the MiSeq (Illumina) system. Journal of Biotechnology, 203, 19-21. doi:10.1016/j.jbiotec.2015.03.005
Wibberg, Daniel, Rupp, Oliver, Jelonek, Lukas, Kröber, Magdalena, Verwaaijen, Bart, Blom, Jochen, Winkler, Anika, et al. 2015. “Improved genome sequence of the phytopathogenic fungus Rhizoctonia solani AG1-IB 7/3/14 as established by deep mate-pair sequencing on the MiSeq (Illumina) system”. Journal of Biotechnology 203: 19-21.
Wibberg, D., Rupp, O., Jelonek, L., Kröber, M., Verwaaijen, B., Blom, J., Winkler, A., Goesmann, A., Grosch, R., Pühler, A., et al. (2015). Improved genome sequence of the phytopathogenic fungus Rhizoctonia solani AG1-IB 7/3/14 as established by deep mate-pair sequencing on the MiSeq (Illumina) system. Journal of Biotechnology 203, 19-21.
Wibberg, D., et al., 2015. Improved genome sequence of the phytopathogenic fungus Rhizoctonia solani AG1-IB 7/3/14 as established by deep mate-pair sequencing on the MiSeq (Illumina) system. Journal of Biotechnology, 203, p 19-21.
D. Wibberg, et al., “Improved genome sequence of the phytopathogenic fungus Rhizoctonia solani AG1-IB 7/3/14 as established by deep mate-pair sequencing on the MiSeq (Illumina) system”, Journal of Biotechnology, vol. 203, 2015, pp. 19-21.
Wibberg, D., Rupp, O., Jelonek, L., Kröber, M., Verwaaijen, B., Blom, J., Winkler, A., Goesmann, A., Grosch, R., Pühler, A., Schlüter, A.: Improved genome sequence of the phytopathogenic fungus Rhizoctonia solani AG1-IB 7/3/14 as established by deep mate-pair sequencing on the MiSeq (Illumina) system. Journal of Biotechnology. 203, 19-21 (2015).
Wibberg, Daniel, Rupp, Oliver, Jelonek, Lukas, Kröber, Magdalena, Verwaaijen, Bart, Blom, Jochen, Winkler, Anika, Goesmann, Alexander, Grosch, Rita, Pühler, Alfred, and Schlüter, Andreas. “Improved genome sequence of the phytopathogenic fungus Rhizoctonia solani AG1-IB 7/3/14 as established by deep mate-pair sequencing on the MiSeq (Illumina) system”. Journal of Biotechnology 203 (2015): 19-21.
Daten bereitgestellt von European Bioinformatics Institute (EBI)
7 Zitationen in Europe PMC
Daten bereitgestellt von Europe PubMed Central.
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Proteomic Analysis of Rhizoctonia solani Identifies Infection-specific, Redox Associated Proteins and Insight into Adaptation to Different Plant Hosts.
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Wibberg D, Rupp O, Blom J, Jelonek L, Kröber M, Verwaaijen B, Goesmann A, Albaum S, Grosch R, Pühler A, Schlüter A., PLoS One 10(12), 2015
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