Draft genome sequence of Herbinix hemicellulosilytica T3/55(T), a new thermophilic cellulose degrading bacterium isolated from a thermophilic biogas reactor

Koeck, Daniela E.; Maus, Irena; Wibberg, Daniel; Winkler, Anika; Zverlov, Vladimir V.; Liebl, Wolfgang; Pühler, Alfred; Schwarz, Wolfgang H.; Schlüter, Andreas

Draft genome sequence of Herbinix hemicellulosilytica T3/55(T), a new thermophilic cellulose degrading bacterium isolated from a thermophilic biogas reactor

Koeck DE, Maus I, Wibberg D, Winkler A, Zverlov VV, Liebl W, Pühler A, Schwarz WH, Schlüter A (2015)
Journal of Biotechnology 214: 59-60.

Zeitschriftenaufsatz | Veröffentlicht | Englisch

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DOI

https://doi.org/10.1016/j.jbiotec.2015.07.022

Autor*in

Koeck, Daniela E.; Maus, Irena^UniBi; Wibberg, Daniel^UniBi; Winkler, Anika^UniBi; Zverlov, Vladimir V.; Liebl, Wolfgang; Pühler, Alfred^UniBi ; Schwarz, Wolfgang H.; Schlüter, Andreas^UniBi

Einrichtung

Centrum für Biotechnologie > Graduate Center > Graduate Cluster Industrial Biotechnology
Centrum für Biotechnologie > Arbeitsgruppe A. Pühler
Centrum für Biotechnologie > Arbeitsgruppe J. Kalinowski

Abstract / Bemerkung

A novel bacterial species was isolated from an industrial-scale biogas plant. The isolate Herbinix hemicellulosilytica T3/55(T) is able to degrade crystalline cellulose. Comparative 16S rRNA gene sequencing demonstrated that the isolate is closely related to environmental samples forming a hitherto unknown sub-cluster within the family Lachnospiraceae. The draft genome sequence of strain T3/55(T) was established and now provides the genetic basis for application of this microorganism in thermophilic degradation of lignocellulosic biomass. (C) 2015 Published by Elsevier B.V.

Stichworte

Biofuel; Anaerobic digestion; Cellulolytic; Biogas; Biogas plant

Erscheinungsjahr

2015

Zeitschriftentitel

Journal of Biotechnology

Band

214

Seite(n)

59-60

ISSN

0168-1656

eISSN

1873-4863

Page URI

https://pub.uni-bielefeld.de/record/2901214

Zitieren

Koeck DE, Maus I, Wibberg D, et al. Draft genome sequence of Herbinix hemicellulosilytica T3/55(T), a new thermophilic cellulose degrading bacterium isolated from a thermophilic biogas reactor. Journal of Biotechnology. 2015;214:59-60.

Koeck, D. E., Maus, I., Wibberg, D., Winkler, A., Zverlov, V. V., Liebl, W., Pühler, A., et al. (2015). Draft genome sequence of Herbinix hemicellulosilytica T3/55(T), a new thermophilic cellulose degrading bacterium isolated from a thermophilic biogas reactor. Journal of Biotechnology, 214, 59-60. doi:10.1016/j.jbiotec.2015.07.022

Koeck, Daniela E., Maus, Irena, Wibberg, Daniel, Winkler, Anika, Zverlov, Vladimir V., Liebl, Wolfgang, Pühler, Alfred, Schwarz, Wolfgang H., and Schlüter, Andreas. 2015. “Draft genome sequence of Herbinix hemicellulosilytica T3/55(T), a new thermophilic cellulose degrading bacterium isolated from a thermophilic biogas reactor”. Journal of Biotechnology 214: 59-60.

Koeck, D. E., Maus, I., Wibberg, D., Winkler, A., Zverlov, V. V., Liebl, W., Pühler, A., Schwarz, W. H., and Schlüter, A. (2015). Draft genome sequence of Herbinix hemicellulosilytica T3/55(T), a new thermophilic cellulose degrading bacterium isolated from a thermophilic biogas reactor. Journal of Biotechnology 214, 59-60.

Koeck, D.E., et al., 2015. Draft genome sequence of Herbinix hemicellulosilytica T3/55(T), a new thermophilic cellulose degrading bacterium isolated from a thermophilic biogas reactor. Journal of Biotechnology, 214, p 59-60.

D.E. Koeck, et al., “Draft genome sequence of Herbinix hemicellulosilytica T3/55(T), a new thermophilic cellulose degrading bacterium isolated from a thermophilic biogas reactor”, Journal of Biotechnology, vol. 214, 2015, pp. 59-60.

Koeck, D.E., Maus, I., Wibberg, D., Winkler, A., Zverlov, V.V., Liebl, W., Pühler, A., Schwarz, W.H., Schlüter, A.: Draft genome sequence of Herbinix hemicellulosilytica T3/55(T), a new thermophilic cellulose degrading bacterium isolated from a thermophilic biogas reactor. Journal of Biotechnology. 214, 59-60 (2015).

Koeck, Daniela E., Maus, Irena, Wibberg, Daniel, Winkler, Anika, Zverlov, Vladimir V., Liebl, Wolfgang, Pühler, Alfred, Schwarz, Wolfgang H., and Schlüter, Andreas. “Draft genome sequence of Herbinix hemicellulosilytica T3/55(T), a new thermophilic cellulose degrading bacterium isolated from a thermophilic biogas reactor”. Journal of Biotechnology 214 (2015): 59-60.

Daten bereitgestellt von European Bioinformatics Institute (EBI)

10 Zitationen in Europe PMC

Daten bereitgestellt von Europe PubMed Central.

Complete Genome Sequence of the Novel Cellulolytic, Anaerobic, Thermophilic Bacterium Herbivorax saccincola Type Strain GGR1, Isolated from a Lab Scale Biogas Reactor as Established by Illumina and Nanopore MinION Sequencing.
Pechtl A, Rückert C, Maus I, Koeck DE, Trushina N, Kornberger P, Schwarz WH, Schlüter A, Liebl W, Zverlov VV., Genome Announc 6(6), 2018
PMID: 29439041

Proteiniphilum saccharofermentans str. M3/6T isolated from a laboratory biogas reactor is versatile in polysaccharide and oligopeptide utilization as deduced from genome-based metabolic reconstructions.
Tomazetto G, Hahnke S, Wibberg D, Pühler A, Klocke M, Schlüter A., Biotechnol Rep (Amst) 18(), 2018
PMID: 29892569

Characterization of the arabinoxylan-degrading machinery of the thermophilic bacterium Herbinix hemicellulosilytica-Six new xylanases, three arabinofuranosidases and one xylosidase.
Mechelke M, Koeck DE, Broeker J, Roessler B, Krabichler F, Schwarz WH, Zverlov VV, Zverlov VV, Liebl W., J Biotechnol 257(), 2017
PMID: 28450260

The completely annotated genome and comparative genomics of the Peptoniphilaceae bacterium str. ING2-D1G, a novel acidogenic bacterium isolated from a mesophilic biogas reactor.
Tomazetto G, Hahnke S, Langer T, Wibberg D, Blom J, Maus I, Pühler A, Klocke M, Schlüter A., J Biotechnol 257(), 2017
PMID: 28595834

Genomics and prevalence of bacterial and archaeal isolates from biogas-producing microbiomes.
Maus I, Bremges A, Stolze Y, Hahnke S, Cibis KG, Koeck DE, Kim YS, Kreubel J, Hassa J, Wibberg D, Weimann A, Off S, Stantscheff R, Zverlov VV, Schwarz WH, König H, Liebl W, Scherer P, McHardy AC, Sczyrba A, Klocke M, Pühler A, Schlüter A., Biotechnol Biofuels 10(), 2017
PMID: 29158776

Deep metagenome and metatranscriptome analyses of microbial communities affiliated with an industrial biogas fermenter, a cow rumen, and elephant feces reveal major differences in carbohydrate hydrolysis strategies.
Güllert S, Fischer MA, Turaev D, Noebauer B, Ilmberger N, Wemheuer B, Alawi M, Rattei T, Daniel R, Schmitz RA, Grundhoff A, Streit WR., Biotechnol Biofuels 9(), 2016
PMID: 27279900

Draft Genome Sequence of Propionispora sp. Strain 2/2-37, a New Xylan-Degrading Bacterium Isolated from a Mesophilic Biogas Reactor.
Koeck DE, Maus I, Wibberg D, Winkler A, Zverlov VV, Zverlov VV, Liebl W, Pühler A, Schwarz WH, Schlüter A., Genome Announc 4(3), 2016
PMID: 27340074

Complete Genome Sequence of Herbinix luporum SD1D, a New Cellulose-Degrading Bacterium Isolated from a Thermophilic Biogas Reactor.
Koeck DE, Maus I, Wibberg D, Winkler A, Zverlov VV, Zverlov VV, Liebl W, Pühler A, Schwarz WH, Schlüter A., Genome Announc 4(4), 2016
PMID: 27445379

Herbivorax saccincola gen. nov., sp. nov., a cellulolytic, anaerobic, thermophilic bacterium isolated via in sacco enrichments from a lab-scale biogas reactor.
Koeck DE, Mechelke M, Zverlov VV, Zverlov VV, Liebl W, Schwarz WH., Int J Syst Evol Microbiol 66(11), 2016
PMID: 27499077

Unraveling the microbiome of a thermophilic biogas plant by metagenome and metatranscriptome analysis complemented by characterization of bacterial and archaeal isolates.
Maus I, Koeck DE, Cibis KG, Hahnke S, Kim YS, Langer T, Kreubel J, Erhard M, Bremges A, Off S, Stolze Y, Jaenicke S, Goesmann A, Sczyrba A, Scherer P, König H, Schwarz WH, Zverlov VV, Zverlov VV, Liebl W, Pühler A, Schlüter A, Klocke M., Biotechnol Biofuels 9(), 2016
PMID: 27525040