New FeFe-hydrogenase genes identified in a metagenomic fosmid library from a municipal wastewater treatment plant as revealed by high-throughput sequencing

Tomazetto G, Wibberg D, Schlüter A, Oliveira VM (2015)
Research in Microbiology 166(1): 9-19.

Zeitschriftenaufsatz | Veröffentlicht | Englisch
 
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DOI
Autor*in
Tomazetto, Geicecler; Wibberg, DanielUniBi; Schlüter, AndreasUniBi ; Oliveira, Valeria M.
Einrichtung
Centrum für Biotechnologie > Graduate Center > Graduate Cluster Industrial Biotechnology
Centrum für Biotechnologie > Arbeitsgruppe A. Pühler
Abstract / Bemerkung
A fosmid metagenomic library was constructed with total community DNA obtained from a municipal wastewater treatment plant (MWWTP), with the aim of identifying new FeFe-hydrogenase genes encoding the enzymes most important for hydrogen metabolism. The dataset generated by pyrosequencing of a fosmid library was mined to identify environmental gene tags (EGTs) assigned to FeFe-hydrogenase. The majority of EGTs representing FeFe-hydrogenase genes were affiliated with the class Clostridia, suggesting that this group is the main hydrogen producer in the MWWTP analyzed. Based on assembled sequences, three FeFe-hydrogenase genes were predicted based on detection of the L2 motif (MPCxxKicxE) in the encoded gene product, confirming true FeFe-hydrogenase sequences. These sequences were used to design specific primers to detect fosmids encoding FeFe-hydrogenase genes predicted from the dataset. Three identified fosmids were completely sequenced. The cloned genomic fragments within these fosmids are closely related to members of the Spirochaetaceae, Bacteroidales and Firmicutes, and their FeFe-hydrogenase sequences are characterized by the structure type M3, which is common to clostridial enzymes. FeFe-hydrogenase sequences found in this study represent hitherto undetected sequences, indicating the high genetic diversity regarding these enzymes in MWWTP. Results suggest that MWWTP have to be considered as reservoirs for new FeFe-hydrogenase genes. (C) 2014 Institut Pasteur. Published by Elsevier Masson SAS. All rights reserved.
Stichworte
Metagenomics; Fosmid library; Anaerobic digestion; [FeFe]-hydrogenase; Microbial community
Erscheinungsjahr
2015
Zeitschriftentitel
Research in Microbiology
Band
166
Ausgabe
1
Seite(n)
9-19
ISSN
0923-2508
Page URI
https://pub.uni-bielefeld.de/record/2731292

Zitieren

Tomazetto G, Wibberg D, Schlüter A, Oliveira VM. New FeFe-hydrogenase genes identified in a metagenomic fosmid library from a municipal wastewater treatment plant as revealed by high-throughput sequencing. Research in Microbiology. 2015;166(1):9-19.
Tomazetto, G., Wibberg, D., Schlüter, A., & Oliveira, V. M. (2015). New FeFe-hydrogenase genes identified in a metagenomic fosmid library from a municipal wastewater treatment plant as revealed by high-throughput sequencing. Research in Microbiology, 166(1), 9-19. doi:10.1016/j.resmic.2014.11.002
Tomazetto, Geicecler, Wibberg, Daniel, Schlüter, Andreas, and Oliveira, Valeria M. 2015. “New FeFe-hydrogenase genes identified in a metagenomic fosmid library from a municipal wastewater treatment plant as revealed by high-throughput sequencing”. Research in Microbiology 166 (1): 9-19.
Tomazetto, G., Wibberg, D., Schlüter, A., and Oliveira, V. M. (2015). New FeFe-hydrogenase genes identified in a metagenomic fosmid library from a municipal wastewater treatment plant as revealed by high-throughput sequencing. Research in Microbiology 166, 9-19.
Tomazetto, G., et al., 2015. New FeFe-hydrogenase genes identified in a metagenomic fosmid library from a municipal wastewater treatment plant as revealed by high-throughput sequencing. Research in Microbiology, 166(1), p 9-19.
G. Tomazetto, et al., “New FeFe-hydrogenase genes identified in a metagenomic fosmid library from a municipal wastewater treatment plant as revealed by high-throughput sequencing”, Research in Microbiology, vol. 166, 2015, pp. 9-19.
Tomazetto, G., Wibberg, D., Schlüter, A., Oliveira, V.M.: New FeFe-hydrogenase genes identified in a metagenomic fosmid library from a municipal wastewater treatment plant as revealed by high-throughput sequencing. Research in Microbiology. 166, 9-19 (2015).
Tomazetto, Geicecler, Wibberg, Daniel, Schlüter, Andreas, and Oliveira, Valeria M. “New FeFe-hydrogenase genes identified in a metagenomic fosmid library from a municipal wastewater treatment plant as revealed by high-throughput sequencing”. Research in Microbiology 166.1 (2015): 9-19.

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