Fungal community profiles in agricultural soils of a long-term field trial under different tillage, fertilization and crop rotation conditions analyzed by high-throughput ITS-amplicon sequencing
Sommermann L, Geistlinger J, Wibberg D, Deubel A, Zwanzig J, Babin D, Schlüter A, Schellenberg I (2018)
PLOS ONE 13(4): e0195345.
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Autor*in
Sommermann, Loreen;
Geistlinger, Joerg;
Wibberg, DanielUniBi;
Deubel, Annette;
Zwanzig, Jessica;
Babin, Doreen;
Schlüter, AndreasUniBi ;
Schellenberg, Ingo
Einrichtung
Abstract / Bemerkung
Fungal communities in agricultural soils are assumed to be affected by soil and crop management. Our intention was to investigate the impact of different tillage and fertilization practices on fungal communities in a long-term crop rotation field trial established in 1992 in Central Germany. Two winter wheat fields in replicated strip-tillage design, comprising conventional vs. conservation tillage, intensive vs. extensive fertilization and different pre-crops (maize vs. rapeseed) were analyzed by a metabarcoding approach applying Illumina paired-end sequencing of amplicons generated by two recently developed primer pairs targeting the two fungal Internal Transcribed Spacer regions (ITS1, ITS2). Analysis of 5.1 million high-quality sequence reads uncovered a diverse fungal community in the two fields, composed of 296 fungal genera including 3,398 Operational Taxonomic Units (OTUs) at the 97% sequence similarity threshold. Both primer pairs detected the same fungal phyla (Basidio-, Asco-, Zygo-, Glomero- and Chytridiomycota), but in different relative abundances. OTU richness was higher in the ITS1 dataset, while ITS2 data were more diverse and of higher evenness. Effects of farming practice on fungal community structures were revealed. Almost two-thirds of the fungal genera were represented in all different soil treatments, whereas the remaining genera clearly responded to farming practice. Principal Component Analysis revealed four distinct clusters according to tillage practice and pre-crop. Analysis of Variance (ANOVA) substantiated the results and proved significant influences of tillage and pre-crop, while fertilization had the smallest and non-significant effect. In-depth analysis of putative phytopathogenic and plant beneficial fungal groups indicated distinct responses; for example Fusarium was significantly enriched in the intensively fertilized conservation tillage variants with the pre-crop maize, while Phoma displayed significant association with conventional tillage and pre-crop rapeseed. Many putative plant beneficial fungi also reacted differentially to farming practice with the most distinct responders identified among the Glomeromycota (arbuscular mycorrhizal fungi, AMF).
Erscheinungsjahr
2018
Zeitschriftentitel
PLOS ONE
Band
13
Ausgabe
4
Art.-Nr.
e0195345
Urheberrecht / Lizenzen
ISSN
1932-6203
Page URI
https://pub.uni-bielefeld.de/record/2920275
Zitieren
Sommermann L, Geistlinger J, Wibberg D, et al. Fungal community profiles in agricultural soils of a long-term field trial under different tillage, fertilization and crop rotation conditions analyzed by high-throughput ITS-amplicon sequencing. PLOS ONE. 2018;13(4): e0195345.
Sommermann, L., Geistlinger, J., Wibberg, D., Deubel, A., Zwanzig, J., Babin, D., Schlüter, A., et al. (2018). Fungal community profiles in agricultural soils of a long-term field trial under different tillage, fertilization and crop rotation conditions analyzed by high-throughput ITS-amplicon sequencing. PLOS ONE, 13(4), e0195345. doi:10.1371/journal.pone.0195345
Sommermann, Loreen, Geistlinger, Joerg, Wibberg, Daniel, Deubel, Annette, Zwanzig, Jessica, Babin, Doreen, Schlüter, Andreas, and Schellenberg, Ingo. 2018. “Fungal community profiles in agricultural soils of a long-term field trial under different tillage, fertilization and crop rotation conditions analyzed by high-throughput ITS-amplicon sequencing”. PLOS ONE 13 (4): e0195345.
Sommermann, L., Geistlinger, J., Wibberg, D., Deubel, A., Zwanzig, J., Babin, D., Schlüter, A., and Schellenberg, I. (2018). Fungal community profiles in agricultural soils of a long-term field trial under different tillage, fertilization and crop rotation conditions analyzed by high-throughput ITS-amplicon sequencing. PLOS ONE 13:e0195345.
Sommermann, L., et al., 2018. Fungal community profiles in agricultural soils of a long-term field trial under different tillage, fertilization and crop rotation conditions analyzed by high-throughput ITS-amplicon sequencing. PLOS ONE, 13(4): e0195345.
L. Sommermann, et al., “Fungal community profiles in agricultural soils of a long-term field trial under different tillage, fertilization and crop rotation conditions analyzed by high-throughput ITS-amplicon sequencing”, PLOS ONE, vol. 13, 2018, : e0195345.
Sommermann, L., Geistlinger, J., Wibberg, D., Deubel, A., Zwanzig, J., Babin, D., Schlüter, A., Schellenberg, I.: Fungal community profiles in agricultural soils of a long-term field trial under different tillage, fertilization and crop rotation conditions analyzed by high-throughput ITS-amplicon sequencing. PLOS ONE. 13, : e0195345 (2018).
Sommermann, Loreen, Geistlinger, Joerg, Wibberg, Daniel, Deubel, Annette, Zwanzig, Jessica, Babin, Doreen, Schlüter, Andreas, and Schellenberg, Ingo. “Fungal community profiles in agricultural soils of a long-term field trial under different tillage, fertilization and crop rotation conditions analyzed by high-throughput ITS-amplicon sequencing”. PLOS ONE 13.4 (2018): e0195345.
Daten bereitgestellt von European Bioinformatics Institute (EBI)
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AUTHOR UNKNOWN, 2015
AUTHOR UNKNOWN, 2015
Distribution and diversity of Paraglomus spp. in tilled agricultural soils.
Gosling P, Proctor M, Jones J, Bending GD., Mycorrhiza 24(1), 2013
PMID: 23715868
Gosling P, Proctor M, Jones J, Bending GD., Mycorrhiza 24(1), 2013
PMID: 23715868
Communities of arbuscular mycorrhizal fungi in arable soils are not necessarily low in diversity.
Hijri I, Sykorova Z, Oehl F, Ineichen K, Mader P, Wiemken A, Redecker D., Mol. Ecol. 15(8), 2006
PMID: 16780440
Hijri I, Sykorova Z, Oehl F, Ineichen K, Mader P, Wiemken A, Redecker D., Mol. Ecol. 15(8), 2006
PMID: 16780440
Early effects of tillage and crop rotation on arbuscular mycorrhizal fungal propagules in an Ultisol
AUTHOR UNKNOWN, 2006
AUTHOR UNKNOWN, 2006
Molecular analysis of arbuscular mycorrhizal fungi colonising a semi-natural grassland along a fertilisation gradient.
Santos JC, Finlay RD, Tehler A., New Phytol. 172(1), 2006
PMID: 16945098
Santos JC, Finlay RD, Tehler A., New Phytol. 172(1), 2006
PMID: 16945098
Biodiversity of arbuscular mycorrhizal fungi in the drawdown zone of the Three Gorges Reservoir under different fertilization histories
AUTHOR UNKNOWN, 2016
AUTHOR UNKNOWN, 2016
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