Daniel Wibberg
PEVZ-ID
179 Publikationen
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2024 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 3000113Hellwig P, Kautzner D, Heyer R, Dittrich A, Wibberg D, Busche T, Winkler A, Reichl U, Benndorf D (2024)PUB | DOI | WoS | PubMed | Europe PMC
Tracing active members in microbial communities by BONCAT and click chemistry-based enrichment of newly synthesized proteins.
ISME Communications: New Developments in Microbial Ecology 4(1): ycae153. -
2024 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2999937Dianat M, Straaten S, Maritato A, Wibberg D, Busche T, Blank LM, Ebert BE (2024)PUB | DOI | WoS | PubMed | Europe PMC
Exploration of InSitu Extraction for Enhanced Triterpenoid Production by Saccharomyces cerevisiae.
Microbial Biotechnology 17(12): e70061. -
2024 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2994036Pawlowski K, Wibberg D, Mehrabi S, Obaid NB, Patyi A, Berckx F, Nguyen H, Hagen M, Lundin D, Brachmann A, Blom J, Herrera-Belaroussi A, Abrouk D, Pujic P, Hahlin A-S, Kalinowski J, Normand P, Sellstedt A (2024)PUB | DOI | WoS | PubMed | Europe PMC
Frankia [NiFe] uptake hydrogenases and genome reduction: different lineages of loss.
FEMS Microbiology Ecology : fiae147. -
2024 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2994435Berckx F, Van Nguyen T, Hilker R, Wibberg D, Battenberg K, Kalinowski J, Berry A, Pawlowski K (2024)PUB | DOI | WoS | PubMed | Europe PMC
Host dependent specialized metabolism of nitrogen export in actinorhizal nodules induced by Frankia cluster-2.
Journal of Experimental Botany: erae446. -
2024 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2994029Yeap CSY, Nguyen NHA, Busche T, Wibberg D, Riha J, Kruse O, Cernik M, Blifernez-Klassen O, Sevcu A (2024)PUB | DOI | WoS | PubMed | Europe PMC
Transcriptomic analysis and cellular responses to nanoscale zero-valent iron in green microalga Raphidocelis subcapitata.
Ecotoxicology and Environmental Safety 286: 117194. -
2024 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2992795Abdel-Glil MY, Solle J, Wibberg D, Neubauer H, Sprague LD (2024)PUB | DOI | WoS | PubMed | Europe PMC
Chromosome-level genome assembly of Tritrichomonas foetus, the causative agent of Bovine Trichomonosis.
Scientific Data 11(1): 1030 . -
2024 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2992114Dielentheis-Frenken MRE, Wibberg D, Blank LM, Tiso T (2024)PUB | DOI | WoS | PubMed | Europe PMC
Draft genome sequence and annotation of the polyextremotolerant polyol lipid-producing fungus aureobasidium pullulans NRRL 62042.
BMC genomic data 25(1): 75. -
2024 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2988657Lick S, Wibberg D, Busche T, Blom J, Grimmler C, Goesmann A, Kalinowski J (2024)PUB | DOI | WoS | PubMed | Europe PMC
Pseudomonas kulmbachensis sp. nov. and Pseudomonas paraveronii sp. nov., originating from chilled beef and chicken breast.
International Journal of Systematic and Evolutionary Microbiology 74(4). -
2024 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2988344Berckx F, Wibberg D, Brachmann A, Morrison C, Obaid NB, Blom J, Kalinowski J, Wall LG, Pawlowski K (2024)PUB | DOI | WoS | PubMed | Europe PMC
Genome analysis and biogeographic distribution of the earliest divergent Frankia clade in the southern hemisphere.
FEMS Microbiology Ecology: fiae042. -
2024 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2986496Helm T, Stausberg T, Previati M, Ernst P, Klein B, Busche T, Kalinowski J, Wibberg D, Wiechert W, Claerhout L, Wierckx N, Noack S (2024)PUB | DOI | WoS | PubMed | Europe PMC
Itaconate Production from Crude Substrates with U. maydis: Scale-up of an Industrially Relevant Bioprocess.
Microbial Cell Factories 23(1): 29. -
2024 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2985596Lecaudey LA, Netzer R, Wibberg D, Busche T, Bloecher N (2024)PUB | DOI | WoS | PubMed | Europe PMC
Metatranscriptome analysis reveals the putative venom toxin repertoire of the biofouling hydroid Ectopleura larynx.
Toxicon 237: 107556. -
2023 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2982191Stanelle-Bertram S, Beck S, Mounogou NK, Schaumburg B, Stoll F, Al Jawazneh A, Schmal Z, Bai T, Zickler M, Beythien G, Becker K, de la Roi M, Heinrich F, Schulz C, Sauter M, Krasemann S, Lange P, Heinemann A, van Riel D, Leijten L, Bauer L, van den Bosch TPP, Lopuhaä B, Busche T, Wibberg D, Schaudien D, Goldmann T, Lüttjohann A, Ruschinski J, Jania H, Müller Z, Pinho Dos Reis V, Krupp-Buzimkic V, Wolff M, Fallerini C, Baldassarri M, Furini S, Norwood K, Käufer C, Schützenmeister N, von Köckritz-Blickwede M, Schroeder M, Jarczak D, Nierhaus A, Welte T, Kluge S, McHardy AC, Sommer F, Kalinowski J, Krauss-Etschmann S, Richter F, von der Thüsen J, Baumgärtner W, Klingel K, Ondruschka B, Renieri A, Gabriel G (2023)PUB | DOI | WoS | PubMed | Europe PMC
CYP19A1 mediates severe SARS-CoV-2 disease outcome in males.
Cell Reports Medicine 4(9): 101152. -
2023 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2984313Zimmermann A, Nouioui I, Pötter G, Neumann-Schaal M, Wolf J, Wibberg D, Mast Y (2023)PUB | DOI | WoS | PubMed | Europe PMC
Kitasatospora fiedleri sp. nov., a novel antibiotic-producing member of the genus Kitasatospora.
International Journal of Systematic and Evolutionary Microbiology 73(11). -
2023 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2986284Sun Y, Gerke J, Becker K, Kuhnert E, Verwaaijen B, Wibberg D, Kalinowski J, Stadler M, Cox RJ (2023)PUB | DOI | WoS | PubMed | Europe PMC
Rapid discovery of terpene tailoring enzymes for total biosynthesis.
Chemical Science 14(46): 13463-13467. -
2023 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2981747Kurpejovic E, Wibberg D, Bastem G, Burgardt A, Busche T, Altinisik Kaya FE, Dräger A, Wendisch VF, Sariyar Akbulut B (2023)PUB | DOI | WoS | PubMed | Europe PMC
Can Genome Sequencing Coupled to Flux Balance Analyses Offer Precision Guidance for Industrial Strain Development? The Lessons from Carbon Trafficking in Corynebacterium glutamicum ATCC 21573.
OMICS: A Journal of Integrative Biology 27(9): 434-443. -
2022 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2967793Köller N, Hahnke S, Zverlov V, Wibberg D, Klingl A, Busche T, Klocke M, Pühler A, Schlüter A, Liebl W, Maus I (2022)PUB | PDF | DOI | Download (ext.) | WoS | PubMed | Europe PMC
Anaeropeptidivorans aminofermentans gen. nov., sp. nov., a mesophilic proteolytic salt-tolerant bacterium isolated from a laboratory-scale biogas fermenter, and emended description of Clostridium colinum.
International Journal of Systematic and Evolutionary Microbiology 72(12). -
2022 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2968933Berckx F, Bandong CM, Wibberg D, Kalinowski J, Willemse J, Brachmann A, Simbahan J, Pawlowski K (2022)PUB | DOI | WoS | PubMed | Europe PMC
Streptomyces coriariae sp. nov., a novel streptomycete isolated from actinorhizal nodules of Coriaria intermedia.
International Journal of Systematic and Evolutionary Microbiology 72(12). -
2022 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2966901Maus I, Wibberg D, Belmann P, Hahnke S, Huang L, Spröer C, Bunk B, Blom J, Sczyrba A, Pühler A, Klocke M, Schlüter A (2022)PUB | PDF | DOI | Download (ext.) | WoS | PubMed | Europe PMC
The novel oligopeptide utilizing species Anaeropeptidivorans aminofermentans M3/9T, its role in anaerobic digestion and occurrence as deduced from large-scale fragment recruitment analyses.
Frontiers in Microbiology 13: 1032515. -
2022 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2961071Willenbücher K, Wibberg D, Huang L, Conrady M, Ramm P, Gätcke J, Busche T, Brandt C, Szewzyk U, Schlüter A, Barrero Canosa J, Maus I (2022)PUB | PDF | DOI | WoS | PubMed | Europe PMC
Phage Genome Diversity in a Biogas-Producing Microbiome Analyzed by Illumina and Nanopore GridION Sequencing.
Microorganisms 10(2): 368. -
2022 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2965159Schafhauser T, Wibberg D, Binder A, Rückert C, Busche T, Wohlleben W, Kalinowski J (2022)PUB | PDF | DOI | Download (ext.) | WoS | PubMed | Europe PMC
Genome Assembly and Genetic Traits of the Pleuromutilin-Producer Clitopilus passeckerianus DSM1602.
Journal of Fungi 8(8): 862. -
2022 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2965454Berckx F, Nguyen TV, Bandong CM, Lin H-H, Yamanaka T, Katayama S, Wibberg D, Blom J, Kalinowski J, Tateno M, Simbahan J, Liu C-T, Brachmann A, Pawlowski K (2022)PUB | DOI | WoS | PubMed | Europe PMC
A tale of two lineages: how the strains of the earliest divergent symbiotic Frankia clade spread over the world.
BMC Genomics 23(1): 602. -
2022 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2965146Díaz M, Bach T, González Anta G, Agaras B, Wibberg D, Noguera F, Canciani W, Valverde C (2022)PUB | PDF | DOI | Download (ext.) | WoS | PubMed | Europe PMC
Agronomic efficiency and genome mining analysis of the wheat-biostimulant rhizospheric bacterium Pseudomonas pergaminensis sp. nov. strain 1008T.
Frontiers in Plant Science 13: 894985. -
2022 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2964659Handel F, Kulik A, Wex KW, Berscheid A, Saur JS, Winkler A, Wibberg D, Kalinowski J, Broetz-Oesterhelt H, Mast Y (2022)PUB | DOI | WoS | PubMed | Europe PMC
psi-Footprinting approach for the identification of protein synthesis inhibitor producers.
NAR: Genomics and Bioinformatics 4(3): lqac055. -
2022 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2963695Liebal UW, Ullmann L, Lieven C, Kohl P, Wibberg D, Zambanini T, Blank LM (2022)PUB | PDF | DOI | Download (ext.) | WoS | PubMed | Europe PMC
Ustilago maydis Metabolic Characterization and Growth Quantification with a Genome-Scale Metabolic Model.
Journal of Fungi 8(5): 524. -
2022 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2961676Ullmann L, Wibberg D, Busche T, Rückert C, Müsgens A, Kalinowski J, Blank LM (2022)PUB | PDF | DOI | WoS | PubMed | Europe PMC
Seventeen Ustilaginaceae High-Quality Genome Sequences Allow Phylogenomic Analysis and Provide Insights into Secondary Metabolite Synthesis.
Journal of Fungi 8(3): 269. -
2022 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2961214Oberhofer M, Malfent F, Zehl M, Urban E, Wackerlig J, Reznicek G, Vignolle GA, Rückert C, Busche T, Wibberg D, Zotchev SB (2022)PUB | DOI | WoS | PubMed | Europe PMC
Biosynthetic potential of the endophytic fungus Helotiales sp. BL73 revealed via compound identification and genome mining.
Applied and Environmental Microbiology : aem0251021. -
2022 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2961099Klaus T, Ninck S, Albersmeier A, Busche T, Wibberg D, Jiang J, Elcheninov AG, Zayulina KS, Kaschani F, Braesen C, Overkleeft HS, Kalinowski J, Kublanov IV, Kaiser M, Siebers B (2022)PUB | PDF | DOI | WoS | PubMed | Europe PMC
Activity-Based Protein Profiling for the Identification of Novel Carbohydrate-Active Enzymes Involved in Xylan Degradation in the Hyperthermophilic Euryarchaeon Thermococcus sp. Strain 2319x1E.
Frontiers in Microbiology 12: 734039. -
2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2950292Blifernez-Klassen O, Klassen V, Wibberg D, Cebeci E, Henke C, Rückert C, Chaudhari S, Rupp O, Blom J, Winkler A, Al-Dilaimi A, Goesmann A, Sczyrba A, Kalinowski J, Bräutigam A, Kruse O (2021)PUB | PDF | DOI | WoS | PubMed | Europe PMC | Preprint
Phytoplankton consortia as a blueprint for mutually beneficial eukaryote-bacteria ecosystems based on the biocoenosis of Botryococcus consortia.
Scientific Reports 11(1): 1726. -
2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2953016Haupka C, Fernandes de Brito L, Busche T, Wibberg D, Wendisch VF (2021)PUB | PDF | DOI | WoS | PubMed | Europe PMC
Genomic and transcriptomic investigation of the physiological response of the methylotroph Bacillus methanolicus to 5-aminovalerate.
Frontiers in Microbiology 12: 664598. -
2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2956428Mingyar E, Muhling L, Kulik A, Winkler A, Wibberg D, Kalinowski J, Blin K, Weber T, Wohlleben W, Stegmann E (2021)PUB | PDF | DOI | Download (ext.) | WoS | PubMed | Europe PMC
A Regulator Based "Semi-Targeted" Approach to Activate Silent Biosynthetic Gene Clusters.
International journal of molecular sciences 22(14): 7567. -
2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2957996Wibberg D, Genzel F, Verwaaijen B, Blom J, Rupp O, Goesmann A, Zrenner R, Grosch R, Pühler A, Schlüter A (2021)PUB | PDF | DOI | WoS | PubMed | Europe PMC
Genome Analyses of the Less Aggressive Rhizoctonia solani AG1-IB Isolates 1/2/21 and O8/2 Compared to the Reference AG1-IB Isolate 7/3/14.
Journal of Fungi 7(10): 832. -
2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2958416Luttermann T, Rückert C, Wibberg D, Busche T, Schwarzhans J-P, Friehs K, Kalinowski J (2021)PUB | PDF | DOI | WoS | PubMed | Europe PMC
Establishment of a near-contiguous genome sequence of the citric acid producing yeast DSM 3286 with resolution of rDNA clusters and telomeres.
NAR Genomics and Bioinformatics 3(4): 13. -
2021 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2951540Mayer G, Muller W, Schork K, Uszkoreit J, Weidemann A, Wittig U, Rey M, Quast C, Felden J, Glockner FO, Lange M, Arend D, Beier S, Junker A, Scholz U, Schuler D, Kestler HA, Wibberg D, Pühler A, Twardziok S, Eils J, Eils R, Hoffmann S, Eisenacher M, Turewicz M (2021)PUB | DOI | WoS | PubMed | Europe PMC
Implementing FAIR data management within the German Network for Bioinformatics Infrastructure (de.NBI) exemplified by selected use cases.
Briefings in Bioinformatics. -
2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2957237Secic E, Zanini S, Wibberg D, Jelonek L, Busche T, Kalinowski J, Nasfi S, Thielmann J, Imani J, Steinbrenner J, Kogel K-H (2021)PUB | DOI | WoS | PubMed | Europe PMC
A novel plant-fungal association reveals fundamental sRNA and gene expression reprogramming at the onset of symbiosis.
BMC Biology 19(1): 171 . -
2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2955526Lick S, Wibberg D, Winkler A, Blom J, Grimmler C, Goesmann A, Kalinowski J, Krockel L (2021)PUB | DOI | WoS | PubMed | Europe PMC
Pseudomonas paraversuta sp. nov. isolated from refrigerated dry-aged beef.
International journal of systematic and evolutionary microbiology 71(6). -
2021 | Zeitschriftenaufsatz | Angenommen | PUB-ID: 2954389Oberbeckmann S, Bartosik D, Huang S, Werner J, Hirschfeld C, Wibberg D, Heiden SE, Bunk B, Overmann J, Becher D, Kalinowski J, Schweder T, Labrenz M, Markert S (Accepted)PUB | DOI | WoS | PubMed | Europe PMC
Genomic and proteomic profiles of biofilms on microplastics are decoupled from artificial surface properties.
Environmental microbiology. -
2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2949923Wibberg D, Price-Carter M, Rückert C, Blom J, Möbius P (2021)PUB | PDF | DOI | WoS | PubMed | Europe PMC
Complete Genome Sequence of Ovine Mycobacterium avium subsp. paratuberculosis Strain JIII-386 (MAP-S/type III) and Its Comparison to MAP-S/type I, MAP-C, and M. avium Complex Genomes.
Microorganisms 9(1): 70. -
2021 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2949961Nilsson JF, Castellani LG, Draghi WO, Mogro EG, Wibberg D, Winkler A, Hansen LH, Schlüter A, Pühler A, Kalinowski J, Torres Tejerizo GA, Pistorio M (2021)PUB | DOI | WoS | PubMed | Europe PMC
Global transcriptome analysis of Rhizobium favelukesii LPU83 in response to acid stress.
FEMS Microbiology Ecology 97(1): fiaa235. -
2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2939840Hassa J, Wibberg D, Maus I, Pühler A, Schlüter A (2020)PUB | PDF | DOI | WoS | PubMed | Europe PMC
Genome Analyses and Genome-Centered Metatranscriptomics of Methanothermobacter wolfeii Strain SIV6, Isolated from a Thermophilic Production-Scale Biogas Fermenter.
Microorganisms 8(1): 13. -
2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941608Stadler M, Lambert C, Wibberg D, Kalinowski J, Cox RJ, Kolarik M, Kuhnert E (2020)PUB | PDF | DOI | WoS
Intragenomic polymorphisms in the ITS region of high-quality genomes of the Hypoxylaceae (Xylariales, Ascomycota).
MYCOLOGICAL PROGRESS 19(3): 235-245. -
2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2943800Wibberg D, Stadler M, Lambert C, Bunk B, Sproer C, Rückert C, Kalinowski J, Cox RJ, Kuhnert E (2020)PUB | PDF | DOI | WoS
High quality genome sequences of thirteen Hypoxylaceae (Ascomycota) strengthen the phylogenetic family backbone and enable the discovery of new taxa.
FUNGAL DIVERSITY. -
2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941645Maus I, Klocke M, Derenkó J, Stolze Y, Beckstette M, Jost C, Wibberg D, Blom J, Henke C, Willenbücher K, Rumming M, Rademacher A, Pühler A, Sczyrba A, Schlüter A (2020)PUB | PDF | DOI | Download (ext.) | WoS | PubMed | Europe PMC
Impact of process temperature and organic loading rate on cellulolytic / hydrolytic biofilm microbiomes during biomethanation of ryegrass silage revealed by genome-centered metagenomics and metatranscriptomics.
Environmental Microbiome 15(1): 7. -
2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2950214Tian D-S, Kuhnert E, Ouazzani J, Wibberg D, Kalinowski J, Cox RJ (2020)PUB | DOI | WoS | PubMed | Europe PMC
The sporothriolides. A new biosynthetic family of fungal secondary metabolites.
Chemical Science 11(46): 12477-12484. -
2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2949597Maus I, Tubbesing TJ, Wibberg D, Heyer R, Hassa J, Tomazetto G, Huang L, Bunk B, Spröer C, Benndorf D, Zverlov V, Pühler A, Klocke M, Sczyrba A, Schlüter A (2020)PUB | PDF | DOI | WoS | PubMed | Europe PMC
The Role of Petrimonas mucosa ING2-E5AT in Mesophilic Biogas Reactor Systems as Deduced from Multiomics Analyses.
Microorganisms 8(12): 2024. -
2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2945217Gurwitz KT, Singh Gaur P, Bellis LJ, Larcombe L, Alloza E, Balint BL, Botzki A, Dimec J, Dominguez Del Angel V, Fernandes PL, Korpelainen E, Krause R, Kuzak M, Le Pera L, Leskosek B, Lindvall JM, Marek D, Martinez PA, Muyldermans T, Nygard S, Palagi PM, Peterson H, Psomopoulos F, Spiwok V, van Gelder CWG, Via A, Vidak M, Wibberg D, Morgan SL, Rustici G (2020)PUB | PDF | DOI | WoS | PubMed | Europe PMC
A framework to assess the quality and impact of bioinformatics training across ELIXIR.
PLoS computational biology 16(7): e1007976. -
2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2948423Herrera-Belaroussi A, Normand P, Pawlowski K, Fernandez MP, Wibberg D, Kalinowski J, Brachmann A, Berckx F, Lee N, Blom J, Pozzi AC, Fournier P, Bethencourt L, Dubost A, Abrouk D, Sellstedt A (2020)PUB | DOI | WoS | PubMed | Europe PMC
Candidatus Frankia nodulisporulans sp. nov., an Alnus glutinosa-infective Frankia species unable to grow in pure culture and able to sporulate in-planta.
Systematic and applied microbiology 43(6): 126134. -
2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2945213Zrenner R, Genzel F, Verwaaijen B, Wibberg D, Grosch R (2020)PUB | DOI | WoS | PubMed | Europe PMC
Necrotrophic lifestyle of Rhizoctonia solani AG3-PT during interaction with its host plant potato as revealed by transcriptome analysis.
Scientific reports 10: 12574. -
2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2945458Allers K, Stahl-Hennig C, Fiedler T, Wibberg D, Hofmann J, Kunkel D, Moos V, Kreikemeyer B, Kalinowski J, Schneider T (2020)PUB | DOI | WoS | PubMed | Europe PMC
The colonic mucosa-associated microbiome in SIV infection: shift towards Bacteroidetes coincides with mucosal CD4(+) T cell depletion and enterocyte damage.
SCIENTIFIC REPORTS 10(1). -
2020 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2944989Tomazetto G, Pimentel AC, Wibberg D, Dixon N, Squina FM (2020)PUB | DOI | WoS | PubMed | Europe PMC
Multi-omic directed discovery of cellulosomes, polysaccharide utilization loci, and lignocellulases from an enriched rumen anaerobic consortium.
Applied and environmental microbiology. -
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2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2943125Berckx F, Wibberg D, Kalinowski J, Pawlowski K (2020)PUB | PDF | DOI | Download (ext.) | WoS | PubMed | Europe PMC
The Peptidoglycan Biosynthesis Gene murC in Frankia: Actinorhizal vs. Plant Type.
Genes 11(4). -
2020 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2940386Lick S, Krockel L, Wibberg D, Winkler A, Blom J, Bantleon A, Goesmann A, Kalinowski J (2020)PUB | DOI | WoS | PubMed | Europe PMC
Pseudomonas carnis sp. nov., isolated from meat.
International journal of systematic and evolutionary microbiology 70(3): 1528-1540. -
2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2940387Fernando Gil J, Wibberg D, Eini O, Savenkov EI, Varrelmann M, Liebe S (2020)PUB | PDF | DOI | WoS | PubMed | Europe PMC
Comparative Transcriptome Analysis Provides Molecular Insights into the Interaction of Beet necrotic yellow vein virus and Beet soil-borne mosaic virus with their Host Sugar Beet.
Viruses 12(1): 76. -
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2956709Wibberg D, Batut B, Belmann P, Blom J, Glöckner FO, Grüning B, Hoffmann N, Kleinbölting N, Rahn R, Rey M, Scholz U, Sharan M, Tauch A, Trojahn U, Usadel B, Kohlbacher O (2019)PUB | DOI
The de.NBI / ELIXIR-DE training platform - Bioinformatics training in Germany and across Europe within ELIXIR.
F1000Research 8: 1877. -
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2935580Baulig A, Helmle I, Bader M, Wolf F, Kulik A, Al-Dilaimi A, Wibberg D, Kalinowski J, Gross H, Kaysser L (2019)PUB | DOI | WoS | PubMed | Europe PMC
Biosynthetic reconstitution of deoxysugar phosphoramidate metalloprotease inhibitors using an N-P-bond-forming kinase.
CHEMICAL SCIENCE 10(16): 4486-4490. -
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2936498Kaaniche F, Hamed A, Abdel-Razek AS, Wibberg D, El Euch IZ, Abdissa N, Allouche N, Mellouli L, Shaaban M, Sewald N (2019)PUB | PDF | DOI | WoS | PubMed | Europe PMC
Bioactive secondary metabolites from new endophytic fungus Curvularia. sp isolated from Rauwolfia macrophylla.
PLoS ONE 14(6): E0217627. -
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2948766Wibberg D, Batut B, Belmann P, Blom J, Glockner FO, Gruning B, Hoffmann N, Kleinbölting N, Rahn R, Rey M, Scholz U, Sharan M, Tauch A, Trojahn U, Usadel B, Kohlbacher O (2019)PUB | DOI | PubMed | Europe PMC
The de.NBI / ELIXIR-DE training platform - Bioinformatics training in Germany and across Europe within ELIXIR.
F1000Research 8: 1877 . -
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2936907Brandt C, Viehweger A, Singh A, Pletz MW, Wibberg D, Kalinowski J, Lerch S, Muller B, Makarewicz O (2019)PUB | DOI | WoS | PubMed | Europe PMC
Assessing genetic diversity and similarity of 435 KPC-carrying plasmids.
Scientific reports 9(1): 11223. -
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2936910Nguyen TV, Wibberg D, Vigil-Stenman T, Berckx F, Battenberg K, Demchenko KN, Blom J, Fernandez MP, Yamanaka T, Berry AM, Kalinowski J, Brachmann A, Pawlowski K (2019)PUB | DOI | WoS | PubMed | Europe PMC
Frankia-enriched metagenomes from the earliest diverging symbiotic Frankia cluster: They come in teams.
Genome biology and evolution 11(8): 2273–2291. -
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941092Liebe S, Wibberg D, Maiss E, Varrelmann M (2019)PUB | DOI | WoS | PubMed | Europe PMC
Application of a Reverse Genetic System for Beet Necrotic Yellow Vein Virus to Study Rz1 Resistance Response in Sugar Beet.
Frontiers in plant science 10: 1703. -
2019 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2938561Lick S, Krockel L, Wibberg D, Winkler A, Blom J, Goesmann A, Kalinowski J (2019)PUB | DOI | WoS | PubMed | Europe PMC
Pseudomonas bubulae sp. nov., isolated from beef.
International journal of systematic and evolutionary microbiology 70(1): 292-301. -
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2935899López JL, Lozano MJ, Lagares A, Fabre ML, Draghi WO, Del Papa MF, Pistorio M, Becker A, Wibberg D, Schlüter A, Pühler A, Blom J, Goesmann A, Lagares A (2019)PUB | PDF | DOI | WoS | PubMed | Europe PMC
Codon Usage Heterogeneity in the Multipartite Prokaryote Genome. Selection-Based Coding Bias Associated with Gene Location, Expression Level, and Ancestry.
mBio 10(3): e00505-19. -
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2935556Verwaaijen B, Wibberg D, Winkler A, Zrenner R, Bednarz H, Niehaus K, Grosch R, Pühler A, Schlüter A (2019)PUB | PDF | DOI | Download (ext.) | WoS | PubMed | Europe PMC
A comprehensive analysis of the Lactuca sativa, L. transcriptome during different stages of the compatible interaction with Rhizoctonia solani.
Scientific Reports 9(1): 7221. -
2019 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2934570Castellani LG, Nilsson JF, Wibberg D, Schlüter A, Pühler A, Brom S, Pistorio M, Tejerizo GT (2019)PUB | DOI | WoS | PubMed | Europe PMC
Insight into the structure, function and conjugative transfer of pLPU83a, an accessory plasmid of Rhizobium favelukesii LPU83.
Plasmid 103: 9-16. -
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2919984Neubauer P, Widmann C, Wibberg D, Schröder L, Frese M, Kottke T, Kalinowski J, Niemann H, Sewald N (2018)PUB | PDF | DOI | WoS | PubMed | Europe PMC
A flavin-dependent halogenase from metagenomic analysis prefers bromination over chlorination.
PLoS ONE 13(5): e0196797. -
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2920168Tomazetto G, Hahnke S, Wibberg D, Pühler A, Klocke M, Schlüter A (2018)PUB | PDF | DOI
Proteiniphilum saccharofermentans str. M3/6 T isolated from a laboratory biogas reactor is versatile in polysaccharide and oligopeptide utilization as deduced from genome-based metabolic reconstructions.
Biotechnology Reports 18: e00254. -
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2918668Hamed A, Abdel-Razek AS, Frese M, Wibberg D, El-Haddad AF, Ibrahim TMA, Kalinowski J, Sewald N, Shaaban M (2018)PUB | DOI | WoS | PubMed | Europe PMC
N-Acetylborrelidin B: a new bioactive metabolite from Streptomyces mutabilis sp MII.
Zeitschrift für Naturforschung C 73(1-2): 49-57. -
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2932964Bracharz F, Helmdach D, Aschenbrenner I, Funck N, Wibberg D, Winkler A, Bohnen F, Kalinowski J, Mehlmer N, Brueck TB (2018)PUB | DOI | WoS | PubMed | Europe PMC
Harvest of the Oleaginous Microalgae Scenedesmus obtusiusculus by Flocculation From Culture Based on Natural Water Sources.
FRONTIERS IN BIOENGINEERING AND BIOTECHNOLOGY 6: 200. -
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2932806Yuecel O, Wibberg D, Philipp B, Kalinowski J (2018)PUB | DOI | WoS | PubMed | Europe PMC
Genome Sequence of the Bile Salt-Degrading Bacterium Novosphingobium sp. Strain Chol11, a Model Organism for Bacterial Steroid Catabolism.
MICROBIOLOGY RESOURCE ANNOUNCEMENTS 6(1): UNSP e01372-17. -
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2920169Salto IP, Torres Tejerizo G, Wibberg D, Pühler A, Schlüter A, Pistorio M (2018)PUB | DOI | WoS | PubMed | Europe PMC
Comparative genomic analysis of Acinetobacter spp. plasmids originating from clinical settings and environmental habitats.
Scientific Reports 8(1): 7783. -
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2920777Celis JS, Wibberg D, Ramírez-Portilla C, Rupp O, Sczyrba A, Winkler A, Kalinowski J, Wilke T (2018)PUB | DOI | Download (ext.) | WoS | PubMed | Europe PMC
Binning Enables Efficient Host Genome Reconstruction in Cnidarian Holobionts.
GigaScience 7(7): giy075. -
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2920680Adamek M, Alanjary M, Sales-Ortells H, Goodfellow M, Bull AT, Winkler A, Wibberg D, Kalinowski J, Ziemert N (2018)PUB | DOI | WoS | PubMed | Europe PMC
Comparative genomics reveals phylogenetic distribution patterns of secondary metabolites in Amycolatopsis species.
BMC GENOMICS 19(1): 15. -
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2919058Senges CHR, Al-Dilaimi A, Marchbank DH, Wibberg D, Winkler A, Haltli B, Nowrousian M, Kalinowski J, Kerr RG, Bandow JE (2018)PUB | DOI | WoS | PubMed | Europe PMC
The secreted metabolome of Streptomyces chartreusis and implications for bacterial chemistry.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 115(10): 2490-2495. -
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2916925Engel K, Sauer J, Jünemann S, Winkler A, Wibberg D, Kalinowski J, Tauch A, Caspers B (2018)PUB | DOI | WoS | PubMed | Europe PMC
Individual- and Species-Specific Skin Microbiomes in Three Different Estrildid Finch Species Revealed by 16S Amplicon Sequencing.
Microbial Ecology 76(2): 518-529. -
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2933306Margos G, Gofton A, Wibberg D, Dangel A, Marosevic D, Loh S-M, Oskam C, Fingerle V (2018)PUB | DOI | WoS | PubMed | Europe PMC
The genus Borrelia reloaded.
PLOS ONE 13(12): e0208432. -
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2920275Sommermann L, Geistlinger J, Wibberg D, Deubel A, Zwanzig J, Babin D, Schlüter A, Schellenberg I (2018)PUB | DOI | WoS | PubMed | Europe PMC
Fungal community profiles in agricultural soils of a long-term field trial under different tillage, fertilization and crop rotation conditions analyzed by high-throughput ITS-amplicon sequencing.
PLOS ONE 13(4): e0195345. -
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2917037Verwaaijen B, Wibberg D, Nelkner J, Gordin M, Rupp O, Winkler A, Bremges A, Blom J, Grosch R, Pühler A, Schlüter A (2018)PUB | DOI | WoS | PubMed | Europe PMC
Assembly of the Lactuca sativa, L. cv. Tizian draft genome sequence reveals differences within major resistance complex 1 as compared to the cv. Salinas reference genome.
Journal of Biotechology 267: 12-18. -
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2933307Hellauer K, Uhl J, Lucio M, Schmitt-Kopplin P, Wibberg D, Huebner U, Drewes JE (2018)PUB | DOI | WoS | PubMed | Europe PMC
Microbiome-Triggered Transformations of Trace Organic Chemicals in the Presence of Effluent Organic Matter in Managed Aquifer Recharge (MAR) Systems.
ENVIRONMENTAL SCIENCE & TECHNOLOGY 52(24): 14342-14351. -
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2932415Netzer R, Henry IA, Ribicic D, Wibberg D, Broenner U, Brakstad OG (2018)PUB | DOI | WoS | PubMed | Europe PMC
Petroleum hydrocarbon and microbial community structure successions in marine oil-related aggregates associated with diatoms relevant for Arctic conditions.
MARINE POLLUTION BULLETIN 135: 759-768. -
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2920173Wibberg D, Salto IP, Eikmeyer FG, Maus I, Winkler A, Nordmann P, Pühler A, Poirel L, Schlüter A (2018)PUB | DOI | WoS | PubMed | Europe PMC
Complete Genome Sequencing of Acinetobacter baumannii Strain K50 Discloses the Large Conjugative Plasmid pK50a Encoding Carbapenemase OXA-23 and Extended-Spectrum β-Lactamase GES-11.
Antimicrobial Agents and Chemotherapy 62(5): e00212-18. -
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2920267Zirpel B, Degenhardt F, Zammarelli C, Wibberg D, Kalinowski J, Stehle F, Kayser O (2018)PUB | DOI | WoS | PubMed | Europe PMC
Optimization of Delta(9)-tetrahydrocannabinolic acid synthase production in Komagataella phaffii via post-translational bottleneck identification.
JOURNAL OF BIOTECHNOLOGY 272: 40-47. -
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2921235Wolf F, Leipoldt F, Kulik A, Wibberg D, Kalinowski J, Kaysser L (2018)PUB | DOI | WoS | PubMed | Europe PMC
Characterization of the Actinonin Biosynthetic Gene Cluster.
CHEMBIOCHEM 19(11): 1189-1195. -
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2918662Mori T, Cahn JKB, Wilson MC, Meoded RA, Wiebach V, Martinez AFC, Helfrich EJN, Albersmeier A, Wibberg D, Datwyler S, Keren R, Lavy A, Rückert C, Ilan M, Kalinowski J, Matsunaga S, Takeyama H, Piel J (2018)PUB | DOI | WoS | PubMed | Europe PMC
Single-bacterial genomics validates rich and varied specialized metabolism of uncultivated Entotheonella sponge symbionts.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 115(8): 1718-1723. -
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2920691Spohn M, Edenhart S, Alanjary M, Ziemert N, Wibberg D, Kalinowski J, Niedermeyer THJ, Stegmann E, Wohlleben W (2018)PUB | DOI | WoS | PubMed | Europe PMC
Identification of a novel aminopolycarboxylic acid siderophore gene cluster encoding the biosynthesis of ethylenediaminesuccinic acid hydroxyarginine (EDHA).
METALLOMICS 10(5): 722-734. -
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2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2912234Eliwa EM, Abdel-Razek AS, Frese M, Wibberg D, Halawa AH, El-Agrody AM, Bedair AH, Kalinowski J, Sewald N, Shaaban M (2017)PUB | DOI | WoS
New bioactive compounds from the marine-derived actinomycete Nocardiopsis lucentensis sp. ASMR2.
Zeitschrift für Naturforschung B 72(5): 351-360. -
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2908531Hersemann L, Wibberg D, Blom J, Goesmann A, Widmer F, Vorhölter F-J, Koelliker R (2017)PUB | DOI | WoS | PubMed | Europe PMC
Comparative genomics of host adaptive traits in Xanthomonas translucens pv. graminis.
BMC GENOMICS 18(1): 35. -
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2915516Maus I, Bremges A, Stolze Y, Hahnke S, Cibis KG, Koeck DE, Kim YS, Kreubel J, Hassa J, Wibberg D, Weimann A, Off S, Stantscheff R, Zverlov VV, Schwarz WH, König H, Liebl W, Scherer P, McHardy AC, Sczyrba A, Klocke M, Pühler A, Schlüter A (2017)PUB | PDF | DOI | Download (ext.) | WoS | PubMed | Europe PMC
Genomics and prevalence of bacterial and archaeal isolates from biogas-producing microbiomes.
Biotechnology for Biofuels 10(1): 264. -
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2912114Verwaaijen B, Wibberg D, Kröber M, Winkler A, Zrenner R, Bednarz H, Niehaus K, Grosch R, Pühler A, Schlüter A (2017)PUB | PDF | DOI | WoS | PubMed | Europe PMC
The Rhizoctonia solani AG1-IB (isolate 7/3/14) transcriptome during interaction with the host plant lettuce (Lactuca sativa L.).
PLOS ONE 12(5): e0177278. -
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2913038Klassen V, Blifernez-Klassen O, Wibberg D, Winkler A, Kalinowski J, Posten C, Kruse O (2017)PUB | PDF | DOI | WoS | PubMed | Europe PMC
Highly efficient methane generation from untreated microalgae biomass.
Biotechnology for Biofuels 10(1): 186. -
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2909432Celis JS, Edgell DR, Stelbrink B, Wibberg D, Hauffe T, Blom J, Kalinowski J, Wilke T (2017)PUB | DOI | WoS | PubMed | Europe PMC
Evolutionary and biogeographical implications of degraded LAGLIDADG endonuclease functionality and group I intron occurrence in stony corals (Scleractinia) and mushroom corals (Corallimorpharia).
PLOS ONE 12(3): e0173734. -
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2910668Friehs K, Schwarzhans JP, Luttermann T, Wibberg D, Winkler A, Hübner W, Huser T, Kalinowski J (2017)PUB | PDF | DOI | WoS | PubMed | Europe PMC
A Mitochondrial Autonomously Replicating Sequence from Pichia pastoris for Uniform High Level Recombinant Protein Production.
Frontiers in Microbiology 8: 780. -
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2916490Wibberg D, Genzel F, Verwaaijen B, Blom J, Rupp O, Goesmann A, Zrenner R, Grosch R, Pühler A, Schlüter A (2017)PUB | DOI | WoS | PubMed | Europe PMC
Draft genome sequence of the potato pathogen Rhizoctonia solani AG3-PT isolate Ben3.
Archives of Microbiology 199(7): 1065-1068. -
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2910369Maus I, Kim YS, Wibberg D, Stolze Y, Off S, Antonczyk S, Pühler A, Scherer P, Schlüter A (2017)PUB | PDF | DOI | WoS | PubMed | Europe PMC
Biphasic Study to Characterize Agricultural Biogas Plants by High-Throughput 16S rRNA Gene Amplicon Sequencing and Microscopic Analysis.
Journal of Microbiology and Biotechnology 27(2): 321-334. -
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2908419Torres Tejerizo GA, Wibberg D, Winkler A, Ormeño-Orrillo E, Martínez-Romero E, Niehaus K, Pühler A, Kalinowski J, Lagares A, Schlüter A, Pistorio M (2017)PUB | PDF | DOI | WoS | PubMed | Europe PMC
Genome Sequence of the Symbiotic Type Strain Rhizobium tibeticum CCBAU85039T.
Genome Announcements 5(4): e01513-16. -
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2911017Kracht ON, Ammann A-C, Stockmann J, Wibberg D, Kalinowski J, Piotrowski M, Kerr R, Brueck T, Kourist R (2017)PUB | DOI | WoS | PubMed | Europe PMC
Transcriptome profiling of the Australian arid-land plant Eremophila serrulata (A.DC.) Druce (Scrophulariaceae) for the identification of monoterpene synthases.
PHYTOCHEMISTRY 136: 15-22. -
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2916470Tomazetto G, Hahnke S, Langer T, Wibberg D, Blom J, Maus I, Pühler A, Klocke M, Schlüter A (2017)PUB | DOI | WoS | PubMed | Europe PMC
The completely annotated genome and comparative genomics of the Peptoniphilaceae bacterium str. ING2-D1G, a novel acidogenic bacterium isolated from a mesophilic biogas reactor.
Journal of Biotechnology 257: 178-186. -
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2910373Bartholomäus A, Wibberg D, Winkler A, Pühler A, Schlüter A, Varrelmann M (2017)PUB | DOI | WoS | PubMed | Europe PMC
Identification of a novel mycovirus isolated from Rhizoctonia solani (AG 2-2 IV) provides further information about genome plasticity within the order Tymovirales.
Archives of Virology 162(2): 555-559. -
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2910380Hamed A, Abdel-Razek AS, Frese M, Wibberg D, El-Haddad AF, Ibrahim TMA, Kalinowski J, Sewald N, Shaaban M (2017)PUB | DOI | WoS
New oxaphenalene derivative from marine-derived Streptomyces griseorubens sp ASMR4.
Zeitschrift für Naturforschung B 72(1): 53-62. -
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2916406Lasek R, Dziewit L, Ciok A, Decewicz P, Romaniuk K, Jedrys Z, Wibberg D, Schlüter A, Pühler A, Bartosik D (2017)PUB | DOI | WoS | PubMed | Europe PMC
Genome content, metabolic pathways and biotechnological potential of the psychrophilic Arctic bacterium Psychrobacter sp DAB_AL43B, a source and a host of novel Psychrobacter-specific vectors.
Journal of Biotechnology 263: 64-74. -
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2914537Kalinowski J, Ahrens B, Al-Dilaimi A, Winkler A, Wibberg D, Schleenbecker U, Rückert C, Wölfel R, Grass G (2017)PUB | DOI | WoS | PubMed | Europe PMC
Isolation and whole genome analysis of endospore-forming bacteria from heroin.
Forensic Sci Int Genet 32: 1-6. -
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2916435Czarnecki J, Dziewit L, Puzyna M, Prochwicz E, Tudek A, Wibberg D, Schlüter A, Pühler A, Bartosik D (2017)PUB | DOI | WoS | PubMed | Europe PMC
Lifestyle-determining extrachromosomal replicon pAMV1 and its contribution to the carbon metabolism of the methylotrophic bacterium Paracoccus aminovorans JCM 7685.
Environmental Microbiology 19(11): 4536-4550. -
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2913403Jahn L, Schafhauser T, Wibberg D, Rückert C, Winkler A, Kulik A, Weber T, Flor L, van Pée K-H, Kalinowski J, Ludwig-Müller J, Wohlleben W (2017)PUB | DOI | WoS | PubMed | Europe PMC
Linking secondary metabolites to biosynthesis genes in the fungal endophyte Cyanodermella asteris: The anti-cancer bisanthraquinone skyrin.
Journal of Biotechnology 257: 233-239. -
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2911777Torres Tejerizo GA, Kim YS, Maus I, Wibberg D, Winkler A, Off S, Pühler A, Scherer P, Schlüter A (2017)PUB | DOI | WoS | PubMed | Europe PMC
Genome sequence of Methanobacterium congolense strain Buetzberg, a hydrogenotrophic, methanogenic archaeon, isolated from a mesophilic industrial-scale biogas plant utilizing bio-waste.
Journal of Biotechnology 247: 1-5. -
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2911462Alkhateeb R, Rückert C, Rupp O, Pucker B, Hublik G, Wibberg D, Niehaus K, Pühler A, Vorhölter F-J (2017)PUB | DOI | WoS | PubMed | Europe PMC
Refined annotation of the complete genome of the phytopathogenic and xanthan producing Xanthomonas campestris pv. campestris strain B100 based on RNA sequence data.
Journal of Biotechnology 253: 55-61. -
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2917144Wibberg D, Andersson L, Tzelepis G, Rupp O, Blom J, Jelonek L, Pühler A, Fogelqvist J, Varrelmann M, Schlüter A, Dixelius C (2016)PUB | DOI | WoS | PubMed | Europe PMC
Genome analysis of the sugar beet pathogen Rhizoctonia solani AG2-2IIIB revealed high numbers in secreted proteins and cell wall degrading enzymes.
BMC Genomics 17(1): 245. -
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2907439Lenta BN, Ngatchou J, Frese M, Ladoh-Yemeda F, Voundi S, Nardella F, Michalek C, Wibberg D, Ngouela S, Tsamo E, Kaiser M, Kalinowski J, Sewald N (2016)PUB | DOI | WoS
Purpureone, an antileishmanial ergochrome from the endophytic fungus Purpureocillium lilacinum.
Zeitschrift für Naturforschung B 71(11): 1159-1167. -
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2907431Bartholomaeus A, Wibberg D, Winkler A, Pühler A, Schlüter A, Varrelmann M (2016)PUB | DOI | WoS | PubMed | Europe PMC
Deep Sequencing Analysis Reveals the Mycoviral Diversity of the Virome of an Avirulent Isolate of Rhizoctonia solani AG-2-2 IV.
PLOS ONE 11(11): e0165965. -
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2908585Zuñiga-Bahamon A, Tobar-Tosse F, Guillermo-Ortega J, Wibberg D, Tauch A (2016)PUB | DOI | WoS | PubMed | Europe PMC
Draft Genome Sequence of Streptococcus anginosus BVI, a New Vaginal Pathogen Candidate.
Genome Announcements 4(6): e01417-16. -
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2906720Nguyen TV, Wibberg D, Battenberg K, Blom J, Vanden Heuvel B, Berry AM, Kalinowski J, Pawlowski K (2016)PUB | DOI | WoS | PubMed | Europe PMC
An assemblage of Frankia Cluster II strains from California contains the canonical nod genes and also the sulfotransferase gene nodH.
BMC Genomics 17(1): 796. -
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2904691Martini MC, Wibberg D, Lozano M, Torres Tejerizo G, Albicoro FJ, Jaenicke S, van Elsas JD, Petroni A, Garcillan-Barcia MP, de la Cruz F, Schlüter A, Pühler A, Pistorio M, Lagares A, Del Papa MF (2016)PUB | DOI | WoS | PubMed | Europe PMC
Genomics of high molecular weight plasmids isolated from an on-farm biopurification system.
Scientific Reports 6(1): 28284. -
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2903655Schwarzhans JP, Wibberg D, Winkler A, Luttermann T, Kalinowski J, Friehs K (2016)PUB | PDF | DOI | WoS | PubMed | Europe PMC
Integration event induced changes in recombinant protein productivity in Pichia pastoris discovered by whole genome sequencing and derived vector optimization.
Microbial Cell Factories 15(1): 84. -
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2904993Koeck DE, Maus I, Wibberg D, Winkler A, Zverlov VV, Liebl W, Pühler A, Schwarz WH, Schlüter A (2016)PUB | PDF | DOI | WoS | PubMed | Europe PMC
Complete Genome Sequence of Herbinix luporumSD1D, a New Cellulose-Degrading Bacterium Isolated from a Thermophilic Biogas Reactor.
Genome Announcements 4(4): e00687-16. -
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2904970Maus I, Wibberg D, Winkler A, Pühler A, Schnürer A, Schlüter A (2016)PUB | PDF | DOI | WoS | PubMed | Europe PMC
Complete Genome Sequence of the MethanogenMethanoculleus bourgensisBA1 Isolated from a Biogas Reactor.
Genome Announcements 4(3): e00568-16. -
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2904978Koeck DE, Maus I, Wibberg D, Winkler A, Zverlov VV, Liebl W, Pühler A, Schwarz WH, Schlüter A (2016)PUB | PDF | DOI | WoS | PubMed | Europe PMC
Draft Genome Sequence of Propionisporasp. Strain 2/2-37, a New Xylan-Degrading Bacterium Isolated from a Mesophilic Biogas Reactor.
Genome Announcements 4(3): e00609-16. -
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2907676Jaenicke S, Bunk B, Wibberg D, Spröer C, Hersemann L, Blom J, Winkler A, Schatschneider S, Albaum S, Kölliker R, Goesmann A, Pühler A, Overmann J, Vorhölter F-J (2016)PUB | PDF | DOI | WoS | PubMed | Europe PMC
Complete Genome Sequence of the Barley Pathogen Xanthomonas translucens pv. translucens DSM 18974 T (ATCC 19319 T).
Genome Announcements 4(6): e01334-16. -
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2907679Schwarzhans JP, Wibberg D, Winkler A, Luttermann T, Kalinowski J, Friehs K (2016)PUB | PDF | DOI | WoS | PubMed | Europe PMC
Non-canonical integration events in Pichia pastoris encountered during standard transformation analysed with genome sequencing.
Scientific Reports 6(1): 38952. -
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2904976Blifernez-Klassen O, Wibberg D, Winkler A, Blom J, Goesmann A, Kalinowski J, Kruse O (2016)PUB | PDF | DOI | WoS | PubMed | Europe PMC
Complete Chloroplast and Mitochondrial Genome Sequences of the Hydrocarbon Oil-Producing Green MicroalgaBotryococcus brauniiRace B (Showa).
Genome Announcements 4(3): e00524-16. -
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2917143Wibberg D, Al-Dilaimi A, Busche T, Wedderhoff I, Schrempf H, Kalinowski J, Lucana DO de O (2016)PUB | DOI | WoS | PubMed | Europe PMC
Complete genome sequence of Streptomyces reticuli, an efficient degrader of crystalline cellulose.
JOURNAL OF BIOTECHNOLOGY 222: 13-14. -
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2906715Koeck DE, Wibberg D, Maus I, Winkler A, Albersmeier A, Zverlov VV, Liebl W, Pühler A, Schwarz WH, Schlüter A (2016)PUB | DOI | WoS | PubMed | Europe PMC
Corrigendum to "Complete genome sequence of the cellulolytic thermophile Ruminoclostridium cellulosi wild-type strain DG5 isolated from a thermophilic biogas plant (J. Biotechnol. 188 (2014) 136–137)")".
Journal of Biotechnology 237: 35. -
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2905630Gren T, Ortseifen V, Wibberg D, Schneiker-Bekel S, Bednarz H, Niehaus K, Zemke T, Persicke M, Pühler A, Kalinowski J (2016)PUB | DOI | WoS | PubMed | Europe PMC
Genetic engineering in Actinoplanes sp SE50/110-development of an intergeneric conjugation system for the introduction of actinophage-based integrative vectors.
Journal of Biotechnology 232: 79-88. -
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2917142Wibberg D, Andersson L, Rupp O, Goesmann A, Pühler A, Varrelmann M, Dixelius C, Schlüter A (2016)PUB | DOI | WoS | PubMed | Europe PMC
Draft genome sequence of the sugar beet pathogen Rhizoctonia solani AG2-2IIIB strain BBA69670.
Journal of Biotechnology 222: 11-12. -
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2904704Celis JS, Wibberg D, Winkler A, Wilke T, Kalinowski J (2016)PUB | DOI | WoS | PubMed | Europe PMC
Complete mitochondrial genome of the scleractinian coral Porites rus.
Mitochondrial DNA 27(5): 3695-3696. -
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2903489Maus I, Cibis KG, Bremges A, Stolze Y, Wibberg D, Tomazetto G, Blom J, Sczyrba A, König H, Pühler A, Schlüter A (2016)PUB | DOI | WoS | PubMed | Europe PMC
Genomic characterization of Defluviitoga tunisiensis L3, a key hydrolytic bacterium in a thermophilic biogas plant and its abundance as determined by metagenome fragment recruitment.
Journal of Biotechnology 232: 50-60. -
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2903302Wibberg D, Bremges A, Dammann-Kalinowski T, Maus I, Igeño MI, Vogelsang R, König C, Luque-Almagro VM, Roldán MD, Sczyrba A, Moreno-Vivián C, Blasco R, Pühler A, Schlüter A (2016)PUB | DOI | WoS | PubMed | Europe PMC
Finished genome sequence and methylome of the cyanide-degrading Pseudomonas pseudoalcaligenes strain CECT5344 as resolved by single-molecule real-time sequencing.
Journal of Biotechnology 232: 61-68. -
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2902126Liebe S, Wibberg D, Winkler A, Pühler A, Schlüter A, Varrelmann M (2016)PUB | DOI | WoS | PubMed | Europe PMC
Taxonomic analysis of the microbial community in stored sugar beets using high-throughput sequencing of different marker genes.
FEMS Microbiology Ecology 92(2): fiw004. -
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2905505Wolf T, Gren T, Thieme E, Wibberg D, Zemke T, Pühler A, Kalinowski J (2016)PUB | DOI | WoS | PubMed | Europe PMC
Targeted genome editing in the rare actinomycete Actinoplanes sp SE50/110 by using the CRISPR/Cas9 System.
Journal of Biotechnology 231: 122-128. -
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2901675Krahn T, Wibberg D, Maus I, Winkler A, Bontron S, Sczyrba A, Nordmann P, Pühler A, Poirel L, Schlüter A (2016)PUB | DOI | WoS | PubMed | Europe PMC
Intraspecies transfer of the chromosomally encoded Acinetobacter baumannii blaNDM-1 carbapenemase gene.
Antimicrobial Agents and Chemotherapy 60(5): 3032-3040. -
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2901808Alkhateeb R, Vorhölter F-J, Rückert C, Mentz A, Wibberg D, Hublik G, Niehaus K, Pühler A (2016)PUB | DOI | WoS | PubMed | Europe PMC
Genome wide transcription start sites analysis of the Xanthomonas campestris pv. campestris B100 with insights into the gum gene cluster directing the biosynthesis of the exopolysaccharide xanthan.
J Biotechnol 225: 18-28. -
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2905504Kröber M, Verwaaijen B, Wibberg D, Winkler A, Pühler A, Schlüter A (2016)PUB | DOI | WoS | PubMed | Europe PMC
Comparative transcriptome analysis of the biocontrol strain Bacillus amyloliquefaciens FZB42 as response to biofilm formation analyzed by RNA sequencing.
Journal of Biotechnology 231: 212-223. -
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2905629Tomazetto G, Hahnke S, Koeck DE, Wibberg D, Maus I, Pühler A, Klocke M, Schlüter A (2016)PUB | DOI | WoS | PubMed | Europe PMC
Complete genome analysis of Clostridium bornimense strain M2/40(T). A new acidogenic Clostridium species isolated from a mesophilic two-phase laboratory-scale biogas reactor.
Journal of Biotechnology 232: 38-49. -
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2946456Theuerl S, Kohrs F, Benndorf D, Maus I, Wibberg D, Schlüter A, Kausmann R, Heiermann M, Rapp E, Reichl U, Pühler A, Klocke M (2015)PUB | DOI | WoS | PubMed | Europe PMC
Community shifts in a well-operating agricultural biogas plant: how process variations are handled by the microbiome.
Applied Microbiology and Biotechnology 99(18): 7791-7803. -
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2911748Krahn T, Wibberg D, Maus I, Winkler A, Pühler A, Poirel L, Schlüter A (2015)PUB | DOI | WoS | PubMed | Europe PMC
Complete Genome Sequence ofAcinetobacter baumanniiCIP 70.10, a Susceptible Reference Strain for Comparative Genome Analyses.
Genome Announcements 3(4): e00850-15. -
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2731076Dziewit L, Pyzik A, Szuplewska M, Matlakowska R, Mielnicki S, Wibberg D, Schlüter A, Pühler A, Bartosik D (2015)PUB | DOI | WoS | PubMed | Europe PMC
Diversity and role of plasmids in adaptation of bacteria inhabiting the Lubin copper mine in Poland, an environment rich in heavy metals.
Frontiers in Microbiology 6: 152. -
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2761035Arnold M, Wibberg D, Blom J, Schatschneider S, Winkler A, Kutter Y, Rückert C, Albersmeier A, Albaum S, Goesmann A, Zange S, Heesemann J, Pühler A, Hogardt M, Vorhölter F-J (2015)PUB | DOI | WoS | PubMed | Europe PMC
Draft Genome Sequence of Pseudomonas aeruginosa Strain WS136, a Highly Cytotoxic ExoS-Positive Wound Isolate Recovered from Pyoderma Gangrenosum.
Genome announcements 3(4): e00680-15. -
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2778477Dziewit L, Czarnecki J, Prochwicz E, Wibberg D, Schlüter A, Pühler A, Bartosik D (2015)PUB | DOI | WoS | PubMed | Europe PMC
Genome-guided insight into the methylotrophy of Paracoccus aminophilus JCM 7686.
Frontiers in Microbiology 6: 852. -
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2901297Wibberg D, Rupp O, Blom J, Jelonek L, Kröber M, Verwaaijen B, Goesmann A, Albaum S, Grosch R, Pühler A, Schlüter A (2015)PUB | PDF | DOI | WoS | PubMed | Europe PMC
Development of a Rhizoctonia solani AG1-IB Specific Gene Model Enables Comparative Genome Analyses between Phytopathogenic R-solani AG1-IA, AG1-IB, AG3 and AG8 Isolates.
Plos One 10(12): e0144769. -
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2785064Krahn T, Wibberg D, Maus I, Winkler A, Nordmann P, Pühler A, Poirel L, Schlüter A (2015)PUB | PDF | DOI | WoS | PubMed | Europe PMC
Complete Genome Sequence of the Clinical Strain Acinetobacter baumannii R2090 Carrying the Chromosomally Encoded Metallo-β-Lactamase GeneblaNDM-1.
Genome Announcements 3(5): e01008-15. -
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2758144Wibberg D, Rupp O, Jelonek L, Kröber M, Verwaaijen B, Blom J, Winkler A, Goesmann A, Grosch R, Pühler A, Schlüter A (2015)PUB | DOI | WoS | PubMed | Europe PMC
Improved genome sequence of the phytopathogenic fungus Rhizoctonia solani AG1-IB 7/3/14 as established by deep mate-pair sequencing on the MiSeq (Illumina) system.
Journal of Biotechnology 203: 19-21. -
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2733521Stoeveken J, Singh R, Kolkenbrock S, Zakrzewski M, Wibberg D, Eikmeyer FG, Pühler A, Schlüter A, Moerschbacher BM (2015)PUB | DOI | WoS | PubMed | Europe PMC
Successful heterologous expression of a novel chitinase identified by sequence analyses of the metagenome from a chitin-enriched soil sample.
Journal of Biotechnology 201: 60-68. -
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2717648Hahnke S, Maus I, Wibberg D, Geizecler T, Pühler A, Klocke M, Schlüter A (2015)PUB | DOI | WoS | PubMed | Europe PMC
Complete genome sequence of the novel Porphyromonadaceae bacterium strain ING2-E5B isolated from a mesophilic lab-scale biogas reactor.
Journal of Biotechnology 193: 34-36. -
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2758122Wibberg D, Alkhateeb R, Winkler A, Albersmeier A, Schatschneider S, Albaum S, Niehaus K, Hublik G, Pühler A, Vorhölter F-J (2015)PUB | DOI | WoS | PubMed | Europe PMC
Draft genome of the xanthan producer Xanthomonas campestris NRRL B-1459 (ATCC 13951).
Journal of Biotechnology 204: 45-46. -
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2758134Maus I, Cibis KG, Wibberg D, Winkler A, Stolze Y, König H, Pühler A, Schlüter A (2015)PUB | DOI | WoS | PubMed | Europe PMC
Complete genome sequence of the strain Defluviitoga tunisiensis L3, isolated from a thermophilic, production-scale biogas plant.
Journal of Biotechnology 203: 17-18. -
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2733509Maus I, Wibberg D, Stantscheff R, Stolze Y, Blom J, Eikmeyer FG, Fracowiak J, König H, Pühler A, Schlüter A (2015)PUB | DOI | WoS | PubMed | Europe PMC
Insights into the annotated genome sequence of Methanoculleus bourgensis MS2(T), related to dominant methanogens in biogas-producing plants.
Journal of Biotechnology 201: 43-53. -
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2901214Koeck DE, Maus I, Wibberg D, Winkler A, Zverlov VV, Liebl W, Pühler A, Schwarz WH, Schlüter A (2015)PUB | DOI | WoS | PubMed | Europe PMC
Draft genome sequence of Herbinix hemicellulosilytica T3/55(T), a new thermophilic cellulose degrading bacterium isolated from a thermophilic biogas reactor.
Journal of Biotechnology 214: 59-60. -
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2764185Schafhauser T, Wibberg D, Rückert C, Winkler A, Flor L, van Pée K-H, Fewer DP, Sivonen K, Jahn L, Ludwig-Müller J, Caradec T, Jacques P, Huijbers MME, van Berkel WJH, Weber T, Wohlleben W, Kalinowski J (2015)PUB | DOI | WoS | PubMed | Europe PMC
Draft genome sequence of Talaromyces islandicus ("Penicillium islandicum") WF-38-12, a neglected mold with significant biotechnological potential.
Journal of Biotechnology 211: 101-102. -
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2731292Tomazetto G, Wibberg D, Schlüter A, Oliveira VM (2015)PUB | DOI | WoS | PubMed | Europe PMC
New FeFe-hydrogenase genes identified in a metagenomic fosmid library from a municipal wastewater treatment plant as revealed by high-throughput sequencing.
Research in Microbiology 166(1): 9-19. -
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2732884Fernandes de Brito L, Bach E, Kalinowski J, Rückert C, Wibberg D, Passaglia L, Wendisch VF (2015)PUB | DOI | WoS | PubMed | Europe PMC
Complete genome sequence of Paenibacillus riograndensis SBR5T, a Gram-positive diazotrophic rhizobacterium.
Journal of Biotechnology 207: 30-31. -
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2651944Tielen P, Wibberg D, Blom J, Rosin N, Meyer A-K, Bunk B, Schobert M, Tüpker R, Schatschneider S, Rückert C, Albersmeier A, Goesmann A, Vorhölter F-J, Jahn D, Pühler A (2014)PUB | DOI | PubMed | Europe PMC
Genome Sequence of the Small-Colony Variant Pseudomonas aeruginosa MH27, Isolated from a Chronic Urethral Catheter Infection.
Genome announcements 2(1). -
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2658490Dziewit L, Czarnecki J, Wibberg D, Radlinska M, Mrozek P, Szymczak M, Schlüter A, Pühler A, Bartosik D (2014)PUB | DOI | WoS | PubMed | Europe PMC | GenBank
Architecture and functions of a multipartite genome of the methylotrophic bacterium Paracoccus aminophilus JCM 7686, containing primary and secondary chromids.
BMC Genomics 15(1): 124. -
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2678800Kröber M, Wibberg D, Grosch R, Eikmeyer FG, Verwaaijen B, Chowdhury SP, Hartmann A, Pühler A, Schlüter A (2014)PUB | PDF | DOI | WoS | PubMed | Europe PMC
Effect of the strain Bacillus amyloliquefaciens FZB42 on the microbial community in the rhizosphere of lettuce under field conditions analyzed by whole metagenome sequencing.
Frontiers in Microbiology 5: 252. -
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2672926Wibberg D, Tielen P, Blom J, Rosin N, Schobert M, Tüpker R, Schatschneider S, Spilker D, Albersmeier A, Goesmann A, Vorhölter F-J, Pühler A, Jahn D (2014)PUB | PDF | DOI | PubMed | Europe PMC
Genome Sequence of the Acute Urethral Catheter Isolate Pseudomonas aeruginosa MH38.
Genome announcements 2(2): e00161-14. -
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2717549Geizecler T, Hahnke S, Maus I, Wibberg D, Pühler A, Schlüter A, Klocke M (2014)PUB | DOI | WoS | PubMed | Europe PMC
Complete genome sequence of Peptoniphilus sp strain ING2-D1G isolated from a mesophilic lab-scale completely stirred tank reactor utilizing maize silage in co-digestion with pig and cattle manure for biomethanation.
Journal of Biotechnology 192: 59-61. -
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2694915Hahnke S, Wibberg D, Geizecler T, Pühler A, Klocke M, Schlüter A (2014)PUB | DOI | WoS | PubMed | Europe PMC
Whole genome sequence of Clostridium bornimense strain M2/40 isolated from a lab-scale mesophilic two-phase biogas reactor digesting maize silage and wheat straw.
Journal of Biotechnology 184: 199-200. -
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2693310Wibberg D, Jelonek L, Rupp O, Kröber M, Goesmann A, Grosch R, Pühler A, Schlüter A (2014)PUB | DOI | WoS | PubMed | Europe PMC
Transcriptome analysis of the phytopathogenic fungus Rhizoctonia solani AG1-IB 7/3/14 applying high-throughput sequencing of expressed sequence tags (ESTs).
Fungal Biology 118(9-10): 800-813. -
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2685861Torres Tejerizo G, Pistorio M, Althabegoiti MJ, Cervantes L, Wibberg D, Schlüter A, Pühler A, Lagares A, Romero D, Brom S (2014)PUB | DOI | WoS | PubMed | Europe PMC
Rhizobial plasmid pLPU83a is able to switch between different transfer machineries depending on its genomic background.
FEMS Microbiology Ecology 88(3): 565-578. -
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2675608Wibberg D, Torres Tejerizo G, Florencia Del Papa M, Martini C, Pühler A, Lagares A, Schlüter A, Pistorio M (2014)PUB | DOI | WoS | PubMed | Europe PMC
Genome sequence of the acid-tolerant strain Rhizobium sp LPU83.
Journal of Biotechnology 176: 40-41. -
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2717539Maus I, Stantscheff R, Wibberg D, Stolze Y, Winkler A, Pühler A, König H, Schlüter A (2014)PUB | DOI | WoS | PubMed | Europe PMC
Complete genome sequence of the methanogenic neotype strain Methanobacterium formicicum MFT.
Journal of Biotechnology 192: 40-41. -
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2717558Koeck DE, Wibberg D, Maus I, Winkler A, Albersmeier A, Zverlov VV, Pühler A, Schwarz WH, Liebl W, Schlüter A (2014)PUB | DOI | WoS | PubMed | Europe PMC
First draft genome sequence of the amylolytic Bacillus thermoamylovorans wild-type strain 1A1 isolated from a thermophilic biogas plant.
Journal of Biotechnology 192: 154-155. -
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2707731Koeck DE, Wibberg D, Maus I, Winkler A, Albersmeier A, Zverlov VV, Liebl W, Pühler A, Schwarz WH, Schlüter A (2014)PUB | DOI | WoS | PubMed | Europe PMC
Complete genome sequence of the cellulolytic thermophile Ruminoclostridium cellulosi wild-type strain DG5 isolated from a thermophilic biogas plant.
Journal of Biotechnology 188: 136-137. -
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2676049Schlüter A, Nordmann P, Bonnin RA, Millemann Y, Eikmeyer FG, Wibberg D, Pühler A, Poirel L (2014)PUB | DOI | WoS | PubMed | Europe PMC
IncH-type plasmid harboring the blaCTX-M-15, blaDHA-1, and qnrB4 genes recovered from animal isolates.
Antimicrobial Agents and Chemotherapy 58(7): 3768-3773. -
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2662055Wibberg D, Luque-Almagro VM, Igeño MI, Bremges A, Roldán MD, Merchán F, Sáez LP, Guijo MI, Manso MI, Macías D, Cabello P, Becerra G, Ibáñez MI, Carmona MI, Escribano MP, Castillo F, Sczyrba A, Moreno-Vivián C, Blasco R, Pühler A, Schlüter A (2014)PUB | DOI | WoS | PubMed | Europe PMC
Complete genome sequence of the cyanide-degrading bacterium Pseudomonas pseudoalcaligenes CECT5344.
Journal of biotechnology 175: 67-68. -
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2605193Eikmeyer FG, Rademacher A, Hanreich A, Hennig M, Jaenicke S, Maus I, Wibberg D, Zakrzewski M, Pühler A, Klocke M, Schlüter A (2013)PUB | PDF | DOI | WoS | PubMed | Europe PMC
Detailed analysis of metagenome datasets obtained from biogas-producing microbial communities residing in biogas reactors does not indicate the presence of putative pathogenic microorganisms.
Biotechnology for Biofuels 6(1): 49. -
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2549908Wibberg D, Jelonek L, Rupp O, Kröber M, Eikmeyer FG, Goesmann A, Hartmann A, Borriss R, Grosch R, Pühler A, Schlüter A (2013)PUB | DOI | WoS | PubMed | Europe PMC
Establishment and interpretation of the genome sequence of the phytopathogenic fungus Rhizoctonia solani AG1-IB isolate 7/3/14.
Journal of Biotechnology 167(2): 142-155. -
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2633427Wibberg D, Blom J, Rückert C, Winkler A, Albersmeier A, Pühler A, Schlüter A, Scharf BE (2013)PUB | DOI | WoS | PubMed | Europe PMC
Draft Genome Sequence of Sinorhizobium meliloti RU11/001, a model organism for flagellum structure, motility and chemotaxis.
Journal of Biotechnology 168(4): 731-733. -
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2645247Maus I, Wibberg D, Stantscheff R, Cibis K, Eikmeyer FG, König H, Pühler A, Schlüter A (2013)PUB | DOI | WoS | PubMed | Europe PMC
Complete genome sequence of the hydrogenotrophic Archaeon Methanobacterium sp Mb1 isolated from a production-scale biogas plant.
Journal of Biotechnology 168(4): 734-736. -
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2609868Shah V, Zakrzewski M, Wibberg D, Eikmeyer FG, Schlüter A, Madamwar D (2013)PUB | DOI | WoS | PubMed | Europe PMC
Taxonomic Profiling and Metagenome Analysis of a Microbial Community from a Habitat Contaminated with Industrial Discharges.
Microbial Ecology 66(3): 533-550. -
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2635526Koeck DE, Wibberg D, Koellmeier T, Blom J, Jaenicke S, Winkler A, Albersmeier A, Zverlov VV, Pühler A, Schwarz WH, Schlüter A (2013)PUB | DOI | WoS | PubMed | Europe PMC
Draft genome sequence of the cellulolytic Clostridium thermocellum wild-type strain BC1 playing a role in cellulosic biomass degradation.
Journal of Biotechnology 168(1): 62-63. -
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2557080Bonnin RA, Poirel L, Nordmann P, Eikmeyer FG, Wibberg D, Pühler A, Schlüter A (2013)PUB | DOI | WoS | PubMed | Europe PMC
Complete sequence of broad-host-range plasmid pNOR-2000 harbouring the metallo-beta-lactamase gene blaVIM-2 from Pseudomonas aeruginosa.
Journal of Antimicrobial Chemotherapy 68(5): 1060-1065. -
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2548286Luque-Almagro VM, Acera F, Igeño MI, Wibberg D, Roldán MD, Sáez LP, Hennig M, Quesada A, Huertas MJ, Blom J, Merchán F, Escribano MP, Jaenicke S, Estepa J, Guijo MI, Martínez-Luque M, Macías D, Szczepanowski R, Becerra G, Ramirez S, Carmona MI, Gutiérrez O, Manso I, Pühler A, Castillo F, Moreno-Vivián C, Schlüter A, Blasco R (2013)PUB | DOI | WoS | PubMed | Europe PMC
Draft whole genome sequence of the cyanide-degrading bacterium Pseudomonas pseudoalcaligenes CECT5344.
Environmental Microbiology 15(1): 253-270. -
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2546244Wibberg D, Szczepanowski R, Eikmeyer FG, Pühler A, Schlüter A (2013)PUB | DOI | WoS | PubMed | Europe PMC
The IncF plasmid pRSB225 isolated from a municipal wastewater treatment plant’s on-site preflooder combining antibiotic resistance and putative virulence functions is highly related to virulence plasmids identified in pathogenic E. coli isolates.
Plasmid 69(2): 127-137. -
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2472279Eikmeyer FG, Hadiati A, Szczepanowski R, Wibberg D, Schneiker-Bekel S, Rogers LM, Brown CB, Top EM, Pühler A, Schlüter A (2012)PUB | DOI | WoS | PubMed | Europe PMC | GenBank
The complete genome sequences of four new IncN plasmids from wastewater treatment plant effluent provide new insights into IncN plasmid diversity and evolution.
Plasmid 68(1): 13-24. -
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2490535Heinl S, Wibberg D, Eikmeyer FG, Szczepanowski R, Blom J, Linke B, Goesmann A, Grabherr R, Schwab H, Pühler A, Schlüter A (2012)PUB | DOI | WoS | PubMed | Europe PMC
Insights into the completely annotated genome of Lactobacillus buchneri CD034, a strain isolated from stable grass silage.
Journal of Biotechnology 161(2): 153-166. -
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2530446Stolze Y, Eikmeyer FG, Wibberg D, Brandis G, Karsten C, Krahn I, Schneiker-Bekel S, Viehöver P, Barsch A, Keck M, Top EM, Niehaus K, Schlüter A (2012)PUB | DOI | WoS | PubMed | Europe PMC
IncP-1 beta plasmids of Comamonas sp and Delftia sp strains isolated from a wastewater treatment plant mediate resistance to and decolorization of the triphenylmethane dye crystal violet.
Microbiology 158(Pt_8): 2060-2072. -
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2526298Maus I, Wibberg D, Stantscheff R, Eikmeyer FG, Seffner A, Boelter J, Szczepanowski R, Blom J, Jaenicke S, König H, Pühler A, Schlüter A (2012)PUB | DOI | WoS | PubMed | Europe PMC
Complete Genome Sequence of the Hydrogenotrophic, Methanogenic Archaeon Methanoculleus bourgensis Strain MS2T, Isolated from a Sewage Sludge Digester.
Journal of Bacteriology 194(19): 5487-5488. -
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2354731Wibberg D, Blom J, Jaenicke S, Kollin F, Rupp O, Scharf B, Schneiker-Bekel S, Szczepanowski R, Goesmann A, Setubal JC, Schmitt R, Pühler A, Schlüter A (2011)PUB | DOI | WoS | PubMed | Europe PMC
Complete genome sequencing of Agrobacterium sp. H13-3, the former Rhizobium lupini H13-3, reveals a tripartite genome consisting of a circular and a linear chromosome and an accessory plasmid but lacking a tumor-inducing Ti-plasmid.
Journal of Biotechnology 155(1): 50-62. -
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2317371Küberl A, Schneider J, Thallinger GG, Anderl I, Wibberg D, Hajek T, Jaenicke S, Brinkrolf K, Goesmann A, Szczepanowski R, Pühler A, Schwab H, Glieder A, Pichler H (2011)PUB | DOI | WoS | PubMed | Europe PMC
High-quality genome sequence of Pichia pastoris CBS7435.
Journal of Biotechnology 154(4): 312-320. -
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2326465Torres Tejerizo G, Florencia Del Papa M, Draghi W, Lozano M, de los Angeles Giusti M, Martini C, Eugenia Salas M, Salto I, Wibberg D, Szczepanowski R, Weidner S, Schlüter A, Lagares A, Pistorio M (2011)PUB | DOI | WoS | PubMed | Europe PMC
First genomic analysis of the broad-host-range Rhizobium sp LPU83 strain, a member of the low-genetic diversity Oregon-like Rhizobium sp group.
Journal of Biotechnology 155(1): 3-10. -
2011 | Zeitschriftenaufsatz | Im Druck | PUB-ID: 2017892Schneiker-Bekel S, Wibberg D, Bekel T, Blom J, Linke B, Neuweger H, Stiens M, Vorhölter F-J, Weidner S, Goesmann A, Pühler A, Schlüter A (In Press)PUB | DOI | WoS | PubMed | Europe PMC
The complete genome sequence of the dominant Sinorhizobium meliloti field isolate SM11 extends the S. meliloti pan-genome.
Journal of Biotechnology 155(1): 20-33.