PUB - Publikationen an der Universität Bielefeld

Genome wide transcription start sites analysis of Xanthomonas campestris pv. campestris B100 with insights into the gum gene cluster directing the biosynthesis of the exopolysaccharide xanthan.
Alkhateeb RS, Vorholter FJ, Ruckert C, Mentz A, Wibberg D, Hublik G, Niehaus K, Puhler A., J. Biotechnol. 225(), 2016
PMID: 26975844

High-resolution transcriptional analysis of the regulatory influence of cell-to-cell signalling reveals novel genes that contribute to Xanthomonas phytopathogenesis.
An SQ, Febrer M, McCarthy Y, Tang DJ, Clissold L, Kaithakottil G, Swarbreck D, Tang JL, Rogers J, Dow JM, Ryan RP., Mol. Microbiol. 88(6), 2013
PMID: 23617851

Xanthan gum biosynthesis and application: a biochemical/genetic perspective.
Becker A, Katzen F, Puhler A, Ielpi L., Appl. Microbiol. Biotechnol. 50(2), 1998
PMID: 9763683

Xanthan Pyruvilation Is Essential for the Virulence of Xanthomonas campestris pv. campestris.
Bianco MI, Toum L, Yaryura PM, Mielnichuk N, Gudesblat GE, Roeschlin R, Marano MR, Ielpi L, Vojnov AA., Mol. Plant Microbe Interact. 29(9), 2016
PMID: 27464764

Plant carbohydrate scavenging through tonB-dependent receptors: a feature shared by phytopathogenic and aquatic bacteria.
Blanvillain S, Meyer D, Boulanger A, Lautier M, Guynet C, Denance N, Vasse J, Lauber E, Arlat M., PLoS ONE 2(2), 2007
PMID: 17311090

EDGAR: a software framework for the comparative analysis of prokaryotic genomes.
Blom J, Albaum SP, Doppmeier D, Puhler A, Vorholter FJ, Zakrzewski M, Goesmann A., BMC Bioinformatics 10(), 2009
PMID: 19457249

Exact and complete short-read alignment to microbial genomes using Graphics Processing Unit programming.
Blom J, Jakobi T, Doppmeier D, Jaenicke S, Kalinowski J, Stoye J, Goesmann A., Bioinformatics 27(10), 2011
PMID: 21450712

EDGAR 2.0: an enhanced software platform for comparative gene content analyses.
Blom J, Kreis J, Spanig S, Juhre T, Bertelli C, Ernst C, Goesmann A., Nucleic Acids Res. 44(W1), 2016
PMID: 27098043

Genome Sequences of the Race 1 and Race 4 Xanthomonas campestris pv. campestris Strains CFBP 1869 and CFBP 5817.
Bolot S, Cerutti A, Carrere S, Arlat M, Fischer-Le Saux M, Portier P, Poussier S, Jacques MA, Noel LD., Genome Announc 3(5), 2015
PMID: 26383661

Genome sequence of Xanthomonas campestris pv. campestris strain Xca5
Bolot, Genome Announc. 1(), 2013

Genome sequences of three atypical Xanthomonas campestris pv. campestris strains, CN14, CN15, and CN16
Bolot, Genome Announc. 1(), 2013

Identification and regulation of the N-acetylglucosamine utilization pathway of the plant pathogenic bacterium Xanthomonas campestris pv. campestris.
Boulanger A, Dejean G, Lautier M, Glories M, Zischek C, Arlat M, Lauber E., J. Bacteriol. 192(6), 2010
PMID: 20081036

The plant pathogen Xanthomonas campestris pv. campestris exploits N-acetylglucosamine during infection
Boulanger, MBio 5(), 2014

Pseudomonas aeruginosa twitching motility: type IV pili in action.
Burrows LL., Annu. Rev. Microbiol. 66(), 2012
PMID: 22746331

Protein export according to schedule: architecture, assembly, and regulation of type III secretion systems from plant- and animal-pathogenic bacteria.
Buttner D., Microbiol. Mol. Biol. Rev. 76(2), 2012
PMID: 22688814

Regulation and secretion of Xanthomonas virulence factors.
Buttner D, Bonas U., FEMS Microbiol. Rev. 34(2), 2009
PMID: 19925633

The Xanthomonas type III effector XopD targets the Arabidopsis transcription factor MYB30 to suppress plant defense.
Canonne J, Marino D, Jauneau A, Pouzet C, Briere C, Roby D, Rivas S., Plant Cell 23(9), 2011
PMID: 21917550

Detection and functional characterization of a 215 amino acid N-terminal extension in the Xanthomonas type III effector XopD.
Canonne J, Marino D, Noel LD, Arechaga I, Pichereaux C, Rossignol M, Roby D, Rivas S., PLoS ONE 5(12), 2010
PMID: 21203472

Identification of the protein sequence of the type III effector XopD from the B100 strain of Xanthomonas campestris pv campestris.
Canonne J, Pichereaux C, Marino D, Roby D, Rossignol M, Rivas S., Plant Signal Behav 7(2), 2012
PMID: 22353870

sRNA-Xcc1, an integron-encoded transposon- and plasmid-transferred trans-acting sRNA, is under the positive control of the key virulence regulators HrpG and HrpX of Xanthomonas campestris pathovar campestris.
Chen XL, Tang DJ, Jiang RP, He YQ, Jiang BL, Lu GT, Tang JL., RNA Biol 8(6), 2011
PMID: 21941121

Unprecedented high-resolution view of bacterial operon architecture revealed by RNA sequencing
Conway, MBio 8(), 2014

Comparison of the genomes of two Xanthomonas pathogens with differing host specificities.
da Silva AC, Ferro JA, Reinach FC, Farah CS, Furlan LR, Quaggio RB, Monteiro-Vitorello CB, Van Sluys MA, Almeida NF, Alves LM, do Amaral AM, Bertolini MC, Camargo LE, Camarotte G, Cannavan F, Cardozo J, Chambergo F, Ciapina LP, Cicarelli RM, Coutinho LL, Cursino-Santos JR, El-Dorry H, Faria JB, Ferreira AJ, Ferreira RC, Ferro MI, Formighieri EF, Franco MC, Greggio CC, Gruber A, Katsuyama AM, Kishi LT, Leite RP, Lemos EG, Lemos MV, Locali EC, Machado MA, Madeira AM, Martinez-Rossi NM, Martins EC, Meidanis J, Menck CF, Miyaki CY, Moon DH, Moreira LM, Novo MT, Okura VK, Oliveira MC, Oliveira VR, Pereira HA, Rossi A, Sena JA, Silva C, de Souza RF, Spinola LA, Takita MA, Tamura RE, Teixeira EC, Tezza RI, Trindade dos Santos M, Truffi D, Tsai SM, White FF, Setubal JC, Kitajima JP., Nature 417(6887), 2002
PMID: 12024217

The xylan utilization system of the plant pathogen Xanthomonas campestris pv campestris controls epiphytic life and reveals common features with oligotrophic bacteria and animal gut symbionts.
Dejean G, Blanvillain-Baufume S, Boulanger A, Darrasse A, Duge de Bernonville T, Girard AL, Carrere S, Jamet S, Zischek C, Lautier M, Sole M, Buttner D, Jacques MA, Lauber E, Arlat M., New Phytol. 198(3), 2013
PMID: 23442088

Draft Genome Sequences of Two New Zealand Xanthomonas campestris pv. campestris Isolates, ICMP 4013 and ICMP 21080.
Desai D, Li JH, van Zijll de Jong E, Braun R, Pitman A, Visnovsky S, Hampton J, Christey M., Genome Announc 3(5), 2015
PMID: 26514760

Xanthomonas citri subsp. citri type IV Pilus is required for twitching motility, biofilm development, and adherence.
Dunger G, Guzzo CR, Andrade MO, Jones JB, Farah CS., Mol. Plant Microbe Interact. 27(10), 2014
PMID: 25180689

The N-Glycan cluster from Xanthomonas campestris pv. campestris: a toolbox for sequential plant N-glycan processing.
Dupoiron S, Zischek C, Ligat L, Carbonne J, Boulanger A, Duge de Bernonville T, Lautier M, Rival P, Arlat M, Jamet E, Lauber E, Albenne C., J. Biol. Chem. 290(10), 2015
PMID: 25586188

Characterization of the pyrophosphate-dependent 6-phosphofructokinase from Xanthomonas campestris pv. campestris.
Frese M, Schatschneider S, Voss J, Vorholter FJ, Niehaus K., Arch. Biochem. Biophys. 546(), 2014
PMID: 24508689

ReadXplorer--visualization and analysis of mapped sequences.
Hilker R, Stadermann KB, Doppmeier D, Kalinowski J, Stoye J, Straube J, Winnebald J, Goesmann A., Bioinformatics 30(16), 2014
PMID: 24790157

ReadXplorer 2-detailed read mapping analysis and visualization from one single source.
Hilker R, Stadermann KB, Schwengers O, Anisiforov E, Jaenicke S, Weisshaar B, Zimmermann T, Goesmann A., Bioinformatics 32(24), 2016
PMID: 27540267

Comparative genomics of host adaptive traits in Xanthomonas translucens pv. graminis.
Hersemann L, Wibberg D, Blom J, Goesmann A, Widmer F, Vorholter FJ, Kolliker R., BMC Genomics 18(1), 2017
PMID: 28056815

Xanthan
Hublik, 2012

Prodigal: prokaryotic gene recognition and translation initiation site identification.
Hyatt D, Chen GL, Locascio PF, Land ML, Larimer FW, Hauser LJ., BMC Bioinformatics 11(), 2010
PMID: 20211023

Identification of four novel small non-coding RNAs from Xanthomonas campestris pathovar campestris.
Jiang RP, Tang DJ, Chen XL, He YQ, Feng JX, Jiang BL, Lu GT, Lin M, Tang JL., BMC Genomics 11(), 2010
PMID: 20482898

Promoter analysis of the Xanthomonas campestris pv. campestris gum operon directing biosynthesis of the xanthan polysaccharide.
Katzen F, Becker A, Zorreguieta A, Puhler A, Ielpi L., J. Bacteriol. 178(14), 1996
PMID: 8763965

Xanthomonas campestris pv. campestris gum mutants: effects on xanthan biosynthesis and plant virulence.
Katzen F, Ferreiro DU, Oddo CG, Ielmini MV, Becker A, Puhler A, Ielpi L., J. Bacteriol. 180(7), 1998
PMID: 9537354

Biology of trans-translation.
Keiler KC., Annu. Rev. Microbiol. 62(), 2008
PMID: 18557701

Applying DNA affinity chromatography to specifically screen for sucrose-related DNA-binding transcriptional regulators of Xanthomonas campestris.
Leßmeier L, Alkhateeb RS, Schulte F, Steffens T, Loka TP, Puhler A, Niehaus K, Vorholter FJ., J. Biotechnol. 232(), 2016
PMID: 27060555

Identification and functional characterization of small non-coding RNAs in Xanthomonas oryzae pathovar oryzae.
Liang H, Zhao YT, Zhang JQ, Wang XJ, Fang RX, Jia YT., BMC Genomics 12(), 2011
PMID: 21276262

Complete Genome Sequence of Xanthomonas campestris pv. campestris Strain 17 from Taiwan.
Liu YC, Wang SC, Yu YJ, Fung KM, Yang MT, Tseng YH, Tsai SF, Sun HS, Lyu PC, Chou SH., Genome Announc 3(6), 2015
PMID: 26679582

Top 10 plant pathogenic bacteria in molecular plant pathology.
Mansfield J, Genin S, Magori S, Citovsky V, Sriariyanum M, Ronald P, Dow M, Verdier V, Beer SV, Machado MA, Toth I, Salmond G, Foster GD., Mol. Plant Pathol. 13(6), 2012
PMID: 22672649

GenDB--an open source genome annotation system for prokaryote genomes.
Meyer F, Goesmann A, McHardy AC, Bartels D, Bekel T, Clausen J, Kalinowski J, Linke B, Rupp O, Giegerich R, Puhler A., Nucleic Acids Res. 31(8), 2003
PMID: 12682369

Acetylornithine transcarbamylase: a novel enzyme in arginine biosynthesis.
Morizono H, Cabrera-Luque J, Shi D, Gallegos R, Yamaguchi S, Yu X, Allewell NM, Malamy MH, Tuchman M., J. Bacteriol. 188(8), 2006
PMID: 16585758

Dynamic protein phosphorylation during the growth of Xanthomonas campestris pv. campestris B100 revealed by a gel-based proteomics approach.
Musa YR, Basell K, Schatschneider S, Vorholter FJ, Becher D, Niehaus K., J. Biotechnol. 167(2), 2013
PMID: 23792782

Rfam 12.0: updates to the RNA families database.
Nawrocki EP, Burge SW, Bateman A, Daub J, Eberhardt RY, Eddy SR, Floden EW, Gardner PP, Jones TA, Tate J, Finn RD., Nucleic Acids Res. 43(Database issue), 2014
PMID: 25392425

Small RNA functions in carbon metabolism and virulence of enteric pathogens.
Papenfort K, Vogel J., Front Cell Infect Microbiol 4(), 2014
PMID: 25077072

Comprehensive analysis of the Corynebacterium glutamicum transcriptome using an improved RNAseq technique.
Pfeifer-Sancar K, Mentz A, Ruckert C, Kalinowski J., BMC Genomics 14(), 2013
PMID: 24341750

Comparative and functional genomic analyses of the pathogenicity of phytopathogen Xanthomonas campestris pv. campestris.
Qian W, Jia Y, Ren SX, He YQ, Feng JX, Lu LF, Sun Q, Ying G, Tang DJ, Tang H, Wu W, Hao P, Wang L, Jiang BL, Zeng S, Gu WY, Lu G, Rong L, Tian Y, Yao Z, Fu G, Chen B, Fang R, Qiang B, Chen Z, Zhao GP, Tang JL, He C., Genome Res. 15(6), 2005
PMID: 15899963

Pathogenomics of Xanthomonas: understanding bacterium-plant interactions.
Ryan RP, Vorholter FJ, Potnis N, Jones JB, Van Sluys MA, Bogdanove AJ, Dow JM., Nat. Rev. Microbiol. 9(5), 2011
PMID: 21478901

Passing GO (gene ontology) in plant pathogen biology: a report from the Xanthomonas Genomics Conference.
Ryan RP, Koebnik R, Szurek B, Boureau T, Bernal A, Bogdanove A, Dow JM., Cell. Microbiol. 11(12), 2009
PMID: 19804485

Metabolic flux pattern of glucose utilization by Xanthomonas campestris pv. campestris: prevalent role of the Entner-Doudoroff pathway and minor fluxes through the pentose phosphate pathway and glycolysis.
Schatschneider S, Huber C, Neuweger H, Watt TF, Puhler A, Eisenreich W, Wittmann C, Niehaus K, Vorholter FJ., Mol Biosyst 10(10), 2014
PMID: 25072918

Establishment, in silico analysis, and experimental verification of a large-scale metabolic network of the xanthan producing Xanthomonas campestris pv. campestris strain B100.
Schatschneider S, Persicke M, Watt SA, Hublik G, Puhler A, Niehaus K, Vorholter FJ., J. Biotechnol. 167(2), 2013
PMID: 23395674

Genome-enabled determination of amino acid biosynthesis in Xanthomonas campestris pv. campestris and identification of biosynthetic pathways for alanine, glycine, and isoleucine by 13C-isotopologue profiling.
Schatschneider S, Vorholter FJ, Ruckert C, Becker A, Eisenreich W, Puhler A, Niehaus K., Mol. Genet. Genomics 286(3-4), 2011
PMID: 21853248

Online measurement of viscosity for biological systems in stirred tank bioreactors.
Schelden M, Lima W, Doerr EW, Wunderlich M, Rehmann L, Buchs J, Regestein L., Biotechnol. Bioeng. 114(5), 2016
PMID: 27861738

Genome-wide transcriptome analysis of the plant pathogen Xanthomonas identifies sRNAs with putative virulence functions.
Schmidtke C, Findeiss S, Sharma CM, Kuhfuss J, Hoffmann S, Vogel J, Stadler PF, Bonas U., Nucleic Acids Res. 40(5), 2011
PMID: 22080557

Small RNA sX13: a multifaceted regulator of virulence in the plant pathogen Xanthomonas
Schmidtke, PLoS Pathog. 9(September), 2013

CARMEN - Comparative Analysis and in silico Reconstruction of organism-specific MEtabolic Networks.
Schneider J, Vorholter FJ, Trost E, Blom J, Musa YR, Neuweger H, Niehaus K, Schatschneider S, Tauch A, Goesmann A., Genet. Mol. Res. 9(3), 2010
PMID: 20799163

Identification of Xanthomonas campestris pv. campestris galactose utilization genes from transcriptome data.
Serrania J, Vorholter FJ, Niehaus K, Puhler A, Becker A., J. Biotechnol. 135(3), 2008
PMID: 18538881

Analysis of outer membrane vesicle associated proteins isolated from the plant pathogenic bacterium Xanthomonas campestris pv. campestris.
Sidhu VK, Vorholter FJ, Niehaus K, Watt SA., BMC Microbiol. 8(), 2008
PMID: 18518965

The influence of a modified lipopolysaccharide O-antigen on the biosynthesis of xanthan in Xanthomonas campestris pv. campestris B100.
Steffens T, Vorholter FJ, Giampa M, Hublik G, Puhler A, Niehaus K., BMC Microbiol. 16(), 2016
PMID: 27215401

The bacterium Xanthomonas
Swings, 1993

Quorum sensing modulation of a putative glycosyltransferase gene cluster essential for Xanthomonas campestris biofilm formation.
Tao F, Swarup S, Zhang LH., Environ. Microbiol. 12(12), 2010
PMID: 20636376

Comparative analysis of different xanthan samples by atomic force microscopy.
Teckentrup J, Al-Hammood O, Steffens T, Bednarz H, Walhorn V, Niehaus K, Anselmetti D., J. Biotechnol. 257(), 2016
PMID: 27919690

AUTHOR UNKNOWN, 0

Insights into genome plasticity and pathogenicity of the plant pathogenic bacterium Xanthomonas campestris pv. vesicatoria revealed by the complete genome sequence.
Thieme F, Koebnik R, Bekel T, Berger C, Boch J, Buttner D, Caldana C, Gaigalat L, Goesmann A, Kay S, Kirchner O, Lanz C, Linke B, McHardy AC, Meyer F, Mittenhuber G, Nies DH, Niesbach-Klosgen U, Patschkowski T, Ruckert C, Rupp O, Schneiker S, Schuster SC, Vorholter FJ, Weber E, Puhler A, Bonas U, Bartels D, Kaiser O., J. Bacteriol. 187(21), 2005
PMID: 16237009

Xanthomonas campestris pv. campestris (cause of black rot of crucifers) in the genomic era is still a worldwide threat to brassica crops.
Vicente JG, Holub EB., Mol. Plant Pathol. 14(1), 2012
PMID: 23051837

Expression of the gum operon directing xanthan biosynthesis in Xanthomonas campestris and its regulation in planta.
Vojnov AA, Slater H, Daniels MJ, Dow JM., Mol. Plant Microbe Interact. 14(6), 2001
PMID: 11386372

The genome of Xanthomonas campestris pv. campestris B100 and its use for the reconstruction of metabolic pathways involved in xanthan biosynthesis.
Vorholter FJ, Schneiker S, Goesmann A, Krause L, Bekel T, Kaiser O, Linke B, Patschkowski T, Ruckert C, Schmid J, Sidhu VK, Sieber V, Tauch A, Watt SA, Weisshaar B, Becker A, Niehaus K, Puhler A., J. Biotechnol. 134(1-2), 2008
PMID: 18304669

Comparison of two Xanthomonas campestris pathovar campestris genomes revealed differences in their gene composition.
Vorholter FJ, Thias T, Meyer F, Bekel T, Kaiser O, Puhler A, Niehaus K., J. Biotechnol. 106(2-3), 2003
PMID: 14651861

Involvement of bacterial TonB-dependent signaling in the generation of an oligogalacturonide damage-associated molecular pattern from plant cell walls exposed to Xanthomonas campestris pv. campestris pectate lyases.
Vorholter FJ, Wiggerich HG, Scheidle H, Sidhu VK, Mrozek K, Kuster H, Puhler A, Niehaus K., BMC Microbiol. 12(), 2012
PMID: 23082751

Low molecular weight plant extract induces metabolic changes and the secretion of extracellular enzymes, but has a negative effect on the expression of the type-III secretion system in Xanthomonas campestris pv. campestris.
Watt TF, Vucur M, Baumgarth B, Watt SA, Niehaus K., J. Biotechnol. 140(1-2), 2008
PMID: 19114064

The noncanonical type III secretion system of Xanthomonas translucens pv. graminis is essential for forage grass infection.
Wichmann F, Vorholter FJ, Hersemann L, Widmer F, Blom J, Niehaus K, Reinhard S, Conradin C, Kolliker R., Mol. Plant Pathol. 14(6), 2013
PMID: 23578314