Daniel Wibberg
PEVZ-ID
177 Publikationen
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2024 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2994036Frankia [NiFe] uptake hydrogenases and genome reduction: different lineages of lossPUB | DOI | WoS | PubMed | Europe PMC
Pawlowski K, Wibberg D, Mehrabi S, Obaid NB, Patyi A, Berckx F, Nguyen H, Hagen M, Lundin D, Brachmann A, Blom J, et al. (2024)
FEMS Microbiology Ecology : fiae147. -
2024 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2994435Host dependent specialized metabolism of nitrogen export in actinorhizal nodules induced by Frankia cluster-2PUB | DOI | WoS | PubMed | Europe PMC
Berckx F, Van Nguyen T, Hilker R, Wibberg D, Battenberg K, Kalinowski J, Berry A, Pawlowski K (2024)
Journal of Experimental Botany: erae446. -
2024 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2994029Transcriptomic analysis and cellular responses to nanoscale zero-valent iron in green microalga Raphidocelis subcapitataPUB | DOI | WoS | PubMed | Europe PMC
Yeap CSY, Nguyen NHA, Busche T, Wibberg D, Riha J, Kruse O, Cernik M, Blifernez-Klassen O, Sevcu A (2024)
Ecotoxicology and Environmental Safety 286: 117194. -
2024 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2992795Chromosome-level genome assembly of Tritrichomonas foetus, the causative agent of Bovine Trichomonosis.PUB | DOI | WoS | PubMed | Europe PMC
Abdel-Glil MY, Solle J, Wibberg D, Neubauer H, Sprague LD (2024)
Scientific Data 11(1): 1030 . -
2024 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2992114Draft genome sequence and annotation of the polyextremotolerant polyol lipid-producing fungus aureobasidium pullulans NRRL 62042PUB | DOI | WoS | PubMed | Europe PMC
Dielentheis-Frenken MRE, Wibberg D, Blank LM, Tiso T (2024)
BMC genomic data 25(1): 75. -
2024 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2988657Pseudomonas kulmbachensis sp. nov. and Pseudomonas paraveronii sp. nov., originating from chilled beef and chicken breastPUB | DOI | WoS | PubMed | Europe PMC
Lick S, Wibberg D, Busche T, Blom J, Grimmler C, Goesmann A, Kalinowski J (2024)
International Journal of Systematic and Evolutionary Microbiology 74(4). -
2024 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2988344Genome analysis and biogeographic distribution of the earliest divergent Frankia clade in the southern hemispherePUB | DOI | WoS | PubMed | Europe PMC
Berckx F, Wibberg D, Brachmann A, Morrison C, Obaid NB, Blom J, Kalinowski J, Wall LG, Pawlowski K (2024)
FEMS Microbiology Ecology: fiae042. -
2024 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2986496Itaconate Production from Crude Substrates with U. maydis: Scale-up of an Industrially Relevant BioprocessPUB | DOI | WoS | PubMed | Europe PMC
Helm T, Stausberg T, Previati M, Ernst P, Klein B, Busche T, Kalinowski J, Wibberg D, Wiechert W, Claerhout L, Wierckx N, et al. (2024)
Microbial Cell Factories 23(1): 29. -
2024 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2985596Metatranscriptome analysis reveals the putative venom toxin repertoire of the biofouling hydroid Ectopleura larynxPUB | DOI | WoS | PubMed | Europe PMC
Lecaudey LA, Netzer R, Wibberg D, Busche T, Bloecher N (2024)
Toxicon 237: 107556. -
2023 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2982191CYP19A1 mediates severe SARS-CoV-2 disease outcome in malesPUB | DOI | WoS | PubMed | Europe PMC
Stanelle-Bertram S, Beck S, Mounogou NK, Schaumburg B, Stoll F, Al Jawazneh A, Schmal Z, Bai T, Zickler M, Beythien G, Becker K, et al. (2023)
Cell Reports Medicine 4(9): 101152. -
2023 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2984313Kitasatospora fiedleri sp. nov., a novel antibiotic-producing member of the genus KitasatosporaPUB | DOI | WoS | PubMed | Europe PMC
Zimmermann A, Nouioui I, Pötter G, Neumann-Schaal M, Wolf J, Wibberg D, Mast Y (2023)
International Journal of Systematic and Evolutionary Microbiology 73(11). -
2023 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2986284Rapid discovery of terpene tailoring enzymes for total biosynthesisPUB | DOI | WoS | PubMed | Europe PMC
Sun Y, Gerke J, Becker K, Kuhnert E, Verwaaijen B, Wibberg D, Kalinowski J, Stadler M, Cox RJ (2023)
Chemical Science 14(46): 13463-13467. -
2023 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2981747Can Genome Sequencing Coupled to Flux Balance Analyses Offer Precision Guidance for Industrial Strain Development? The Lessons from Carbon Trafficking in Corynebacterium glutamicum ATCC 21573PUB | DOI | WoS | PubMed | Europe PMC
Kurpejovic E, Wibberg D, Bastem G, Burgardt A, Busche T, Altinisik Kaya FE, Dräger A, Wendisch VF, Sariyar Akbulut B (2023)
OMICS: A Journal of Integrative Biology 27(9): 434-443. -
2022 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2967793
Anaeropeptidivorans aminofermentans gen. nov., sp. nov., a mesophilic proteolytic salt-tolerant bacterium isolated from a laboratory-scale biogas fermenter, and emended description of Clostridium colinumPUB | PDF | DOI | Download (ext.) | WoS | PubMed | Europe PMC
Köller N, Hahnke S, Zverlov V, Wibberg D, Klingl A, Busche T, Klocke M, Pühler A, Schlüter A, Liebl W, Maus I (2022)
International Journal of Systematic and Evolutionary Microbiology 72(12). -
2022 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2968933Streptomyces coriariae sp. nov., a novel streptomycete isolated from actinorhizal nodules of Coriaria intermediaPUB | DOI | WoS | PubMed | Europe PMC
Berckx F, Bandong CM, Wibberg D, Kalinowski J, Willemse J, Brachmann A, Simbahan J, Pawlowski K (2022)
International Journal of Systematic and Evolutionary Microbiology 72(12). -
2022 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2966901
The novel oligopeptide utilizing species Anaeropeptidivorans aminofermentans M3/9T, its role in anaerobic digestion and occurrence as deduced from large-scale fragment recruitment analysesPUB | PDF | DOI | Download (ext.) | WoS | PubMed | Europe PMC
Maus I, Wibberg D, Belmann P, Hahnke S, Huang L, Spröer C, Bunk B, Blom J, Sczyrba A, Pühler A, Klocke M, et al. (2022)
Frontiers in Microbiology 13: 1032515. -
2022 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2961071
Phage Genome Diversity in a Biogas-Producing Microbiome Analyzed by Illumina and Nanopore GridION SequencingPUB | PDF | DOI | WoS | PubMed | Europe PMC
Willenbücher K, Wibberg D, Huang L, Conrady M, Ramm P, Gätcke J, Busche T, Brandt C, Szewzyk U, Schlüter A, Barrero Canosa J, et al. (2022)
Microorganisms 10(2): 368. -
2022 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2965159
Genome Assembly and Genetic Traits of the Pleuromutilin-Producer Clitopilus passeckerianus DSM1602PUB | PDF | DOI | Download (ext.) | WoS | PubMed | Europe PMC
Schafhauser T, Wibberg D, Binder A, Rückert C, Busche T, Wohlleben W, Kalinowski J (2022)
Journal of Fungi 8(8): 862. -
2022 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2965454A tale of two lineages: how the strains of the earliest divergent symbiotic Frankia clade spread over the worldPUB | DOI | WoS | PubMed | Europe PMC
Berckx F, Nguyen TV, Bandong CM, Lin H-H, Yamanaka T, Katayama S, Wibberg D, Blom J, Kalinowski J, Tateno M, Simbahan J, et al. (2022)
BMC Genomics 23(1): 602. -
2022 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2965146
Agronomic efficiency and genome mining analysis of the wheat-biostimulant rhizospheric bacterium Pseudomonas pergaminensis sp. nov. strain 1008TPUB | PDF | DOI | Download (ext.) | WoS | PubMed | Europe PMC
Díaz M, Bach T, González Anta G, Agaras B, Wibberg D, Noguera F, Canciani W, Valverde C (2022)
Frontiers in Plant Science 13: 894985. -
2022 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2964659psi-Footprinting approach for the identification of protein synthesis inhibitor producersPUB | DOI | WoS | PubMed | Europe PMC
Handel F, Kulik A, Wex KW, Berscheid A, Saur JS, Winkler A, Wibberg D, Kalinowski J, Broetz-Oesterhelt H, Mast Y (2022)
NAR: Genomics and Bioinformatics 4(3): lqac055. -
2022 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2963695
Ustilago maydis Metabolic Characterization and Growth Quantification with a Genome-Scale Metabolic ModelPUB | PDF | DOI | Download (ext.) | WoS | PubMed | Europe PMC
Liebal UW, Ullmann L, Lieven C, Kohl P, Wibberg D, Zambanini T, Blank LM (2022)
Journal of Fungi 8(5): 524. -
2022 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2961676
Seventeen Ustilaginaceae High-Quality Genome Sequences Allow Phylogenomic Analysis and Provide Insights into Secondary Metabolite SynthesisPUB | PDF | DOI | WoS | PubMed | Europe PMC
Ullmann L, Wibberg D, Busche T, Rückert C, Müsgens A, Kalinowski J, Blank LM (2022)
Journal of Fungi 8(3): 269. -
2022 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2961214Biosynthetic potential of the endophytic fungus Helotiales sp. BL73 revealed via compound identification and genome miningPUB | DOI | WoS | PubMed | Europe PMC
Oberhofer M, Malfent F, Zehl M, Urban E, Wackerlig J, Reznicek G, Vignolle GA, Rückert C, Busche T, Wibberg D, Zotchev SB (2022)
Applied and Environmental Microbiology : aem0251021. -
2022 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2961099
Activity-Based Protein Profiling for the Identification of Novel Carbohydrate-Active Enzymes Involved in Xylan Degradation in the Hyperthermophilic Euryarchaeon Thermococcus sp. Strain 2319x1EPUB | PDF | DOI | WoS | PubMed | Europe PMC
Klaus T, Ninck S, Albersmeier A, Busche T, Wibberg D, Jiang J, Elcheninov AG, Zayulina KS, Kaschani F, Braesen C, Overkleeft HS, et al. (2022)
Frontiers in Microbiology 12: 734039. -
2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2950292
Phytoplankton consortia as a blueprint for mutually beneficial eukaryote-bacteria ecosystems based on the biocoenosis of Botryococcus consortiaPUB | PDF | DOI | WoS | PubMed | Europe PMC | Preprint
Blifernez-Klassen O, Klassen V, Wibberg D, Cebeci E, Henke C, Rückert C, Chaudhari S, Rupp O, Blom J, Winkler A, Al-Dilaimi A, et al. (2021)
Scientific Reports 11(1): 1726. -
2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2953016
Genomic and transcriptomic investigation of the physiological response of the methylotroph Bacillus methanolicus to 5-aminovaleratePUB | PDF | DOI | WoS | PubMed | Europe PMC
Haupka C, Fernandes de Brito L, Busche T, Wibberg D, Wendisch VF (2021)
Frontiers in Microbiology 12: 664598. -
2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2956428
A Regulator Based "Semi-Targeted" Approach to Activate Silent Biosynthetic Gene ClustersPUB | PDF | DOI | Download (ext.) | WoS | PubMed | Europe PMC
Mingyar E, Muhling L, Kulik A, Winkler A, Wibberg D, Kalinowski J, Blin K, Weber T, Wohlleben W, Stegmann E (2021)
International journal of molecular sciences 22(14): 7567. -
2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2957996
Genome Analyses of the Less Aggressive Rhizoctonia solani AG1-IB Isolates 1/2/21 and O8/2 Compared to the Reference AG1-IB Isolate 7/3/14PUB | PDF | DOI | WoS | PubMed | Europe PMC
Wibberg D, Genzel F, Verwaaijen B, Blom J, Rupp O, Goesmann A, Zrenner R, Grosch R, Pühler A, Schlüter A (2021)
Journal of Fungi 7(10): 832. -
2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2958416
Establishment of a near-contiguous genome sequence of the citric acid producing yeast DSM 3286 with resolution of rDNA clusters and telomeresPUB | PDF | DOI | WoS | PubMed | Europe PMC
Luttermann T, Rückert C, Wibberg D, Busche T, Schwarzhans J-P, Friehs K, Kalinowski J (2021)
NAR Genomics and Bioinformatics 3(4): 13. -
2021 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2951540Implementing FAIR data management within the German Network for Bioinformatics Infrastructure (de.NBI) exemplified by selected use casesPUB | DOI | WoS | PubMed | Europe PMC
Mayer G, Muller W, Schork K, Uszkoreit J, Weidemann A, Wittig U, Rey M, Quast C, Felden J, Glockner FO, Lange M, et al. (2021)
Briefings in Bioinformatics. -
2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2957237A novel plant-fungal association reveals fundamental sRNA and gene expression reprogramming at the onset of symbiosisPUB | DOI | WoS | PubMed | Europe PMC
Secic E, Zanini S, Wibberg D, Jelonek L, Busche T, Kalinowski J, Nasfi S, Thielmann J, Imani J, Steinbrenner J, Kogel K-H (2021)
BMC Biology 19(1): 171 . -
2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2955526Pseudomonas paraversuta sp. nov. isolated from refrigerated dry-aged beef.PUB | DOI | WoS | PubMed | Europe PMC
Lick S, Wibberg D, Winkler A, Blom J, Grimmler C, Goesmann A, Kalinowski J, Krockel L (2021)
International journal of systematic and evolutionary microbiology 71(6). -
2021 | Zeitschriftenaufsatz | Angenommen | PUB-ID: 2954389Genomic and proteomic profiles of biofilms on microplastics are decoupled from artificial surface propertiesPUB | DOI | WoS | PubMed | Europe PMC
Oberbeckmann S, Bartosik D, Huang S, Werner J, Hirschfeld C, Wibberg D, Heiden SE, Bunk B, Overmann J, Becher D, Kalinowski J, et al. (Accepted)
Environmental microbiology. -
2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2949923
Complete Genome Sequence of Ovine Mycobacterium avium subsp. paratuberculosis Strain JIII-386 (MAP-S/type III) and Its Comparison to MAP-S/type I, MAP-C, and M. avium Complex GenomesPUB | PDF | DOI | WoS | PubMed | Europe PMC
Wibberg D, Price-Carter M, Rückert C, Blom J, Möbius P (2021)
Microorganisms 9(1): 70. -
2021 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2949961Global transcriptome analysis of Rhizobium favelukesii LPU83 in response to acid stressPUB | DOI | WoS | PubMed | Europe PMC
Nilsson JF, Castellani LG, Draghi WO, Mogro EG, Wibberg D, Winkler A, Hansen LH, Schlüter A, Pühler A, Kalinowski J, Torres Tejerizo GA, et al. (2021)
FEMS Microbiology Ecology 97(1): fiaa235. -
2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2939840
Genome Analyses and Genome-Centered Metatranscriptomics of Methanothermobacter wolfeii Strain SIV6, Isolated from a Thermophilic Production-Scale Biogas FermenterPUB | PDF | DOI | WoS | PubMed | Europe PMC
Hassa J, Wibberg D, Maus I, Pühler A, Schlüter A (2020)
Microorganisms 8(1): 13. -
2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941608
Intragenomic polymorphisms in the ITS region of high-quality genomes of the Hypoxylaceae (Xylariales, Ascomycota)PUB | PDF | DOI | WoS
Stadler M, Lambert C, Wibberg D, Kalinowski J, Cox RJ, Kolarik M, Kuhnert E (2020)
MYCOLOGICAL PROGRESS 19(3): 235-245. -
2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2943800
High quality genome sequences of thirteen Hypoxylaceae (Ascomycota) strengthen the phylogenetic family backbone and enable the discovery of new taxaPUB | PDF | DOI | WoS
Wibberg D, Stadler M, Lambert C, Bunk B, Sproer C, Rückert C, Kalinowski J, Cox RJ, Kuhnert E (2020)
FUNGAL DIVERSITY. -
2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941645
Impact of process temperature and organic loading rate on cellulolytic / hydrolytic biofilm microbiomes during biomethanation of ryegrass silage revealed by genome-centered metagenomics and metatranscriptomicsPUB | PDF | DOI | Download (ext.) | WoS | PubMed | Europe PMC
Maus I, Klocke M, Derenkó J, Stolze Y, Beckstette M, Jost C, Wibberg D, Blom J, Henke C, Willenbücher K, Rumming M, et al. (2020)
Environmental Microbiome 15(1): 7. -
2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2950214The sporothriolides. A new biosynthetic family of fungal secondary metabolitesPUB | DOI | WoS | PubMed | Europe PMC
Tian D-S, Kuhnert E, Ouazzani J, Wibberg D, Kalinowski J, Cox RJ (2020)
Chemical Science 11(46): 12477-12484. -
2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2949597
The Role of Petrimonas mucosa ING2-E5AT in Mesophilic Biogas Reactor Systems as Deduced from Multiomics AnalysesPUB | PDF | DOI | WoS | PubMed | Europe PMC
Maus I, Tubbesing TJ, Wibberg D, Heyer R, Hassa J, Tomazetto G, Huang L, Bunk B, Spröer C, Benndorf D, Zverlov V, et al. (2020)
Microorganisms 8(12): 2024. -
2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2945217
A framework to assess the quality and impact of bioinformatics training across ELIXIR.PUB | PDF | DOI | WoS | PubMed | Europe PMC
Gurwitz KT, Singh Gaur P, Bellis LJ, Larcombe L, Alloza E, Balint BL, Botzki A, Dimec J, Dominguez Del Angel V, Fernandes PL, Korpelainen E, et al. (2020)
PLoS computational biology 16(7): e1007976. -
2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2948423Candidatus Frankia nodulisporulans sp. nov., an Alnus glutinosa-infective Frankia species unable to grow in pure culture and able to sporulate in-plantaPUB | DOI | WoS | PubMed | Europe PMC
Herrera-Belaroussi A, Normand P, Pawlowski K, Fernandez MP, Wibberg D, Kalinowski J, Brachmann A, Berckx F, Lee N, Blom J, Pozzi AC, et al. (2020)
Systematic and applied microbiology 43(6): 126134. -
2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2945213Necrotrophic lifestyle of Rhizoctonia solani AG3-PT during interaction with its host plant potato as revealed by transcriptome analysis.PUB | DOI | WoS | PubMed | Europe PMC
Zrenner R, Genzel F, Verwaaijen B, Wibberg D, Grosch R (2020)
Scientific reports 10: 12574. -
2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2945458The colonic mucosa-associated microbiome in SIV infection: shift towards Bacteroidetes coincides with mucosal CD4(+) T cell depletion and enterocyte damagePUB | DOI | WoS | PubMed | Europe PMC
Allers K, Stahl-Hennig C, Fiedler T, Wibberg D, Hofmann J, Kunkel D, Moos V, Kreikemeyer B, Kalinowski J, Schneider T (2020)
SCIENTIFIC REPORTS 10(1). -
2020 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2944989Multi-omic directed discovery of cellulosomes, polysaccharide utilization loci, and lignocellulases from an enriched rumen anaerobic consortium.PUB | DOI | WoS | PubMed | Europe PMC
Tomazetto G, Pimentel AC, Wibberg D, Dixon N, Squina FM (2020)
Applied and environmental microbiology. -
2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2943896
Draft genome sequence of Streptomyces tunisialbus DSM 105760T.PUB | PDF | DOI | WoS | PubMed | Europe PMC
Ayed A, Wibberg D, Zendah El Euch I, Frese M, Limam F, Sewald N (2020)
Archives of microbiology 202: 2013-2017. -
2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2943125
The Peptidoglycan Biosynthesis Gene murC in Frankia: Actinorhizal vs. Plant Type.PUB | PDF | DOI | Download (ext.) | WoS | PubMed | Europe PMC
Berckx F, Wibberg D, Kalinowski J, Pawlowski K (2020)
Genes 11(4). -
2020 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2940386Pseudomonas carnis sp. nov., isolated from meat.PUB | DOI | WoS | PubMed | Europe PMC
Lick S, Krockel L, Wibberg D, Winkler A, Blom J, Bantleon A, Goesmann A, Kalinowski J (2020)
International journal of systematic and evolutionary microbiology 70(3): 1528-1540. -
2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2940387
Comparative Transcriptome Analysis Provides Molecular Insights into the Interaction of Beet necrotic yellow vein virus and Beet soil-borne mosaic virus with their Host Sugar BeetPUB | PDF | DOI | WoS | PubMed | Europe PMC
Fernando Gil J, Wibberg D, Eini O, Savenkov EI, Varrelmann M, Liebe S (2020)
Viruses 12(1): 76. -
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2956709The de.NBI / ELIXIR-DE training platform - Bioinformatics training in Germany and across Europe within ELIXIRPUB | DOI
Wibberg D, Batut B, Belmann P, Blom J, Glöckner FO, Grüning B, Hoffmann N, Kleinbölting N, Rahn R, Rey M, Scholz U, et al. (2019)
F1000Research 8: 1877. -
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2935580Biosynthetic reconstitution of deoxysugar phosphoramidate metalloprotease inhibitors using an N-P-bond-forming kinasePUB | DOI | WoS | PubMed | Europe PMC
Baulig A, Helmle I, Bader M, Wolf F, Kulik A, Al-Dilaimi A, Wibberg D, Kalinowski J, Gross H, Kaysser L (2019)
CHEMICAL SCIENCE 10(16): 4486-4490. -
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2936498
Bioactive secondary metabolites from new endophytic fungus Curvularia. sp isolated from Rauwolfia macrophylla.PUB | PDF | DOI | WoS | PubMed | Europe PMC
Kaaniche F, Hamed A, Abdel-Razek AS, Wibberg D, El Euch IZ, Abdissa N, Allouche N, Mellouli L, Shaaban M, Sewald N (2019)
PLoS ONE 14(6): E0217627. -
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2948766The de.NBI / ELIXIR-DE training platform - Bioinformatics training in Germany and across Europe within ELIXIRPUB | DOI | PubMed | Europe PMC
Wibberg D, Batut B, Belmann P, Blom J, Glockner FO, Gruning B, Hoffmann N, Kleinbölting N, Rahn R, Rey M, Scholz U, et al. (2019)
F1000Research 8: 1877 . -
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2936907Assessing genetic diversity and similarity of 435 KPC-carrying plasmids.PUB | DOI | WoS | PubMed | Europe PMC
Brandt C, Viehweger A, Singh A, Pletz MW, Wibberg D, Kalinowski J, Lerch S, Muller B, Makarewicz O (2019)
Scientific reports 9(1): 11223. -
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2936910Frankia-enriched metagenomes from the earliest diverging symbiotic Frankia cluster: They come in teams.PUB | DOI | WoS | PubMed | Europe PMC
Nguyen TV, Wibberg D, Vigil-Stenman T, Berckx F, Battenberg K, Demchenko KN, Blom J, Fernandez MP, Yamanaka T, Berry AM, Kalinowski J, et al. (2019)
Genome biology and evolution 11(8): 2273–2291. -
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941092Application of a Reverse Genetic System for Beet Necrotic Yellow Vein Virus to Study Rz1 Resistance Response in Sugar Beet.PUB | DOI | WoS | PubMed | Europe PMC
Liebe S, Wibberg D, Maiss E, Varrelmann M (2019)
Frontiers in plant science 10: 1703. -
2019 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2938561Pseudomonas bubulae sp. nov., isolated from beef.PUB | DOI | WoS | PubMed | Europe PMC
Lick S, Krockel L, Wibberg D, Winkler A, Blom J, Goesmann A, Kalinowski J (2019)
International journal of systematic and evolutionary microbiology 70(1): 292-301. -
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2935899
Codon Usage Heterogeneity in the Multipartite Prokaryote Genome. Selection-Based Coding Bias Associated with Gene Location, Expression Level, and AncestryPUB | PDF | DOI | WoS | PubMed | Europe PMC
López JL, Lozano MJ, Lagares A, Fabre ML, Draghi WO, Del Papa MF, Pistorio M, Becker A, Wibberg D, Schlüter A, Pühler A, et al. (2019)
mBio 10(3): e00505-19. -
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2935556
A comprehensive analysis of the Lactuca sativa, L. transcriptome during different stages of the compatible interaction with Rhizoctonia solaniPUB | PDF | DOI | Download (ext.) | WoS | PubMed | Europe PMC
Verwaaijen B, Wibberg D, Winkler A, Zrenner R, Bednarz H, Niehaus K, Grosch R, Pühler A, Schlüter A (2019)
Scientific Reports 9(1): 7221. -
2019 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2934570Insight into the structure, function and conjugative transfer of pLPU83a, an accessory plasmid of Rhizobium favelukesii LPU83PUB | DOI | WoS | PubMed | Europe PMC
Castellani LG, Nilsson JF, Wibberg D, Schlüter A, Pühler A, Brom S, Pistorio M, Tejerizo GT (2019)
Plasmid 103: 9-16. -
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2919984
A flavin-dependent halogenase from metagenomic analysis prefers bromination over chlorinationPUB | PDF | DOI | WoS | PubMed | Europe PMC
Neubauer P, Widmann C, Wibberg D, Schröder L, Frese M, Kottke T, Kalinowski J, Niemann H, Sewald N (2018)
PLoS ONE 13(5): e0196797. -
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2920168
Proteiniphilum saccharofermentans str. M3/6 T isolated from a laboratory biogas reactor is versatile in polysaccharide and oligopeptide utilization as deduced from genome-based metabolic reconstructionsPUB | PDF | DOI
Tomazetto G, Hahnke S, Wibberg D, Pühler A, Klocke M, Schlüter A (2018)
Biotechnology Reports 18: e00254. -
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2918668N-Acetylborrelidin B: a new bioactive metabolite from Streptomyces mutabilis sp MIIPUB | DOI | WoS | PubMed | Europe PMC
Hamed A, Abdel-Razek AS, Frese M, Wibberg D, El-Haddad AF, Ibrahim TMA, Kalinowski J, Sewald N, Shaaban M (2018)
Zeitschrift für Naturforschung C 73(1-2): 49-57. -
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2932964Harvest of the Oleaginous Microalgae Scenedesmus obtusiusculus by Flocculation From Culture Based on Natural Water SourcesPUB | DOI | WoS | PubMed | Europe PMC
Bracharz F, Helmdach D, Aschenbrenner I, Funck N, Wibberg D, Winkler A, Bohnen F, Kalinowski J, Mehlmer N, Brueck TB (2018)
FRONTIERS IN BIOENGINEERING AND BIOTECHNOLOGY 6: 200. -
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2932806Genome Sequence of the Bile Salt-Degrading Bacterium Novosphingobium sp. Strain Chol11, a Model Organism for Bacterial Steroid CatabolismPUB | DOI | WoS | PubMed | Europe PMC
Yuecel O, Wibberg D, Philipp B, Kalinowski J (2018)
MICROBIOLOGY RESOURCE ANNOUNCEMENTS 6(1): UNSP e01372-17. -
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2920169Comparative genomic analysis of Acinetobacter spp. plasmids originating from clinical settings and environmental habitatsPUB | DOI | WoS | PubMed | Europe PMC
Salto IP, Torres Tejerizo G, Wibberg D, Pühler A, Schlüter A, Pistorio M (2018)
Scientific Reports 8(1): 7783. -
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2920777Binning Enables Efficient Host Genome Reconstruction in Cnidarian HolobiontsPUB | DOI | Download (ext.) | WoS | PubMed | Europe PMC
Celis JS, Wibberg D, Ramírez-Portilla C, Rupp O, Sczyrba A, Winkler A, Kalinowski J, Wilke T (2018)
GigaScience 7(7): giy075. -
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2920680Comparative genomics reveals phylogenetic distribution patterns of secondary metabolites in Amycolatopsis speciesPUB | DOI | WoS | PubMed | Europe PMC
Adamek M, Alanjary M, Sales-Ortells H, Goodfellow M, Bull AT, Winkler A, Wibberg D, Kalinowski J, Ziemert N (2018)
BMC GENOMICS 19(1): 15. -
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2919058The secreted metabolome of Streptomyces chartreusis and implications for bacterial chemistryPUB | DOI | WoS | PubMed | Europe PMC
Senges CHR, Al-Dilaimi A, Marchbank DH, Wibberg D, Winkler A, Haltli B, Nowrousian M, Kalinowski J, Kerr RG, Bandow JE (2018)
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 115(10): 2490-2495. -
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2916925Individual- and Species-Specific Skin Microbiomes in Three Different Estrildid Finch Species Revealed by 16S Amplicon SequencingPUB | DOI | WoS | PubMed | Europe PMC
Engel K, Sauer J, Jünemann S, Winkler A, Wibberg D, Kalinowski J, Tauch A, Caspers B (2018)
Microbial Ecology 76(2): 518-529. -
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2933306The genus Borrelia reloadedPUB | DOI | WoS | PubMed | Europe PMC
Margos G, Gofton A, Wibberg D, Dangel A, Marosevic D, Loh S-M, Oskam C, Fingerle V (2018)
PLOS ONE 13(12): e0208432. -
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2920275Fungal community profiles in agricultural soils of a long-term field trial under different tillage, fertilization and crop rotation conditions analyzed by high-throughput ITS-amplicon sequencingPUB | DOI | WoS | PubMed | Europe PMC
Sommermann L, Geistlinger J, Wibberg D, Deubel A, Zwanzig J, Babin D, Schlüter A, Schellenberg I (2018)
PLOS ONE 13(4): e0195345. -
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2917037Assembly of the Lactuca sativa, L. cv. Tizian draft genome sequence reveals differences within major resistance complex 1 as compared to the cv. Salinas reference genomePUB | DOI | WoS | PubMed | Europe PMC
Verwaaijen B, Wibberg D, Nelkner J, Gordin M, Rupp O, Winkler A, Bremges A, Blom J, Grosch R, Pühler A, Schlüter A (2018)
Journal of Biotechology 267: 12-18. -
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2933307Microbiome-Triggered Transformations of Trace Organic Chemicals in the Presence of Effluent Organic Matter in Managed Aquifer Recharge (MAR) SystemsPUB | DOI | WoS | PubMed | Europe PMC
Hellauer K, Uhl J, Lucio M, Schmitt-Kopplin P, Wibberg D, Huebner U, Drewes JE (2018)
ENVIRONMENTAL SCIENCE & TECHNOLOGY 52(24): 14342-14351. -
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2932415Petroleum hydrocarbon and microbial community structure successions in marine oil-related aggregates associated with diatoms relevant for Arctic conditionsPUB | DOI | WoS | PubMed | Europe PMC
Netzer R, Henry IA, Ribicic D, Wibberg D, Broenner U, Brakstad OG (2018)
MARINE POLLUTION BULLETIN 135: 759-768. -
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2920173Complete Genome Sequencing of Acinetobacter baumannii Strain K50 Discloses the Large Conjugative Plasmid pK50a Encoding Carbapenemase OXA-23 and Extended-Spectrum β-Lactamase GES-11PUB | DOI | WoS | PubMed | Europe PMC
Wibberg D, Salto IP, Eikmeyer FG, Maus I, Winkler A, Nordmann P, Pühler A, Poirel L, Schlüter A (2018)
Antimicrobial Agents and Chemotherapy 62(5): e00212-18. -
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2920267Optimization of Delta(9)-tetrahydrocannabinolic acid synthase production in Komagataella phaffii via post-translational bottleneck identificationPUB | DOI | WoS | PubMed | Europe PMC
Zirpel B, Degenhardt F, Zammarelli C, Wibberg D, Kalinowski J, Stehle F, Kayser O (2018)
JOURNAL OF BIOTECHNOLOGY 272: 40-47. -
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2921235Characterization of the Actinonin Biosynthetic Gene ClusterPUB | DOI | WoS | PubMed | Europe PMC
Wolf F, Leipoldt F, Kulik A, Wibberg D, Kalinowski J, Kaysser L (2018)
CHEMBIOCHEM 19(11): 1189-1195. -
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2918662Single-bacterial genomics validates rich and varied specialized metabolism of uncultivated Entotheonella sponge symbiontsPUB | DOI | WoS | PubMed | Europe PMC
Mori T, Cahn JKB, Wilson MC, Meoded RA, Wiebach V, Martinez AFC, Helfrich EJN, Albersmeier A, Wibberg D, Datwyler S, Keren R, et al. (2018)
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 115(8): 1718-1723. -
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2920691Identification of a novel aminopolycarboxylic acid siderophore gene cluster encoding the biosynthesis of ethylenediaminesuccinic acid hydroxyarginine (EDHA)PUB | DOI | WoS | PubMed | Europe PMC
Spohn M, Edenhart S, Alanjary M, Ziemert N, Wibberg D, Kalinowski J, Niedermeyer THJ, Stegmann E, Wohlleben W (2018)
METALLOMICS 10(5): 722-734. -
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2915518
Whole transcriptome RNA-Seq analysis reveals extensive cell type-specific compartmentalization in Volvox carteriPUB | PDF | DOI | WoS | PubMed | Europe PMC
Klein B, Wibberg D, Hallmann A (2017)
BMC Biology 15(1): 111. -
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2912234New bioactive compounds from the marine-derived actinomycete Nocardiopsis lucentensis sp. ASMR2PUB | DOI | WoS
Eliwa EM, Abdel-Razek AS, Frese M, Wibberg D, Halawa AH, El-Agrody AM, Bedair AH, Kalinowski J, Sewald N, Shaaban M (2017)
Zeitschrift für Naturforschung B 72(5): 351-360. -
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2908531Comparative genomics of host adaptive traits in Xanthomonas translucens pv. graminisPUB | DOI | WoS | PubMed | Europe PMC
Hersemann L, Wibberg D, Blom J, Goesmann A, Widmer F, Vorhölter F-J, Koelliker R (2017)
BMC GENOMICS 18(1): 35. -
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2915516
Genomics and prevalence of bacterial and archaeal isolates from biogas-producing microbiomesPUB | PDF | DOI | Download (ext.) | WoS | PubMed | Europe PMC
Maus I, Bremges A, Stolze Y, Hahnke S, Cibis KG, Koeck DE, Kim YS, Kreubel J, Hassa J, Wibberg D, Weimann A, et al. (2017)
Biotechnology for Biofuels 10(1): 264. -
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2912114
The Rhizoctonia solani AG1-IB (isolate 7/3/14) transcriptome during interaction with the host plant lettuce (Lactuca sativa L.)PUB | PDF | DOI | WoS | PubMed | Europe PMC
Verwaaijen B, Wibberg D, Kröber M, Winkler A, Zrenner R, Bednarz H, Niehaus K, Grosch R, Pühler A, Schlüter A (2017)
PLOS ONE 12(5): e0177278. -
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2913038
Highly efficient methane generation from untreated microalgae biomassPUB | PDF | DOI | WoS | PubMed | Europe PMC
Klassen V, Blifernez-Klassen O, Wibberg D, Winkler A, Kalinowski J, Posten C, Kruse O (2017)
Biotechnology for Biofuels 10(1): 186. -
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2909432Evolutionary and biogeographical implications of degraded LAGLIDADG endonuclease functionality and group I intron occurrence in stony corals (Scleractinia) and mushroom corals (Corallimorpharia)PUB | DOI | WoS | PubMed | Europe PMC
Celis JS, Edgell DR, Stelbrink B, Wibberg D, Hauffe T, Blom J, Kalinowski J, Wilke T (2017)
PLOS ONE 12(3): e0173734. -
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2910668
A Mitochondrial Autonomously Replicating Sequence from Pichia pastoris for Uniform High Level Recombinant Protein ProductionPUB | PDF | DOI | WoS | PubMed | Europe PMC
Friehs K, Schwarzhans JP, Luttermann T, Wibberg D, Winkler A, Hübner W, Huser T, Kalinowski J (2017)
Frontiers in Microbiology 8: 780. -
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2916490Draft genome sequence of the potato pathogen Rhizoctonia solani AG3-PT isolate Ben3PUB | DOI | WoS | PubMed | Europe PMC
Wibberg D, Genzel F, Verwaaijen B, Blom J, Rupp O, Goesmann A, Zrenner R, Grosch R, Pühler A, Schlüter A (2017)
Archives of Microbiology 199(7): 1065-1068. -
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2910369
Biphasic Study to Characterize Agricultural Biogas Plants by High-Throughput 16S rRNA Gene Amplicon Sequencing and Microscopic AnalysisPUB | PDF | DOI | WoS | PubMed | Europe PMC
Maus I, Kim YS, Wibberg D, Stolze Y, Off S, Antonczyk S, Pühler A, Scherer P, Schlüter A (2017)
Journal of Microbiology and Biotechnology 27(2): 321-334. -
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2908419
Genome Sequence of the Symbiotic Type Strain Rhizobium tibeticum CCBAU85039TPUB | PDF | DOI | WoS | PubMed | Europe PMC
Torres Tejerizo GA, Wibberg D, Winkler A, Ormeño-Orrillo E, Martínez-Romero E, Niehaus K, Pühler A, Kalinowski J, Lagares A, Schlüter A, Pistorio M (2017)
Genome Announcements 5(4): e01513-16. -
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2911017Transcriptome profiling of the Australian arid-land plant Eremophila serrulata (A.DC.) Druce (Scrophulariaceae) for the identification of monoterpene synthasesPUB | DOI | WoS | PubMed | Europe PMC
Kracht ON, Ammann A-C, Stockmann J, Wibberg D, Kalinowski J, Piotrowski M, Kerr R, Brueck T, Kourist R (2017)
PHYTOCHEMISTRY 136: 15-22. -
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2916470The completely annotated genome and comparative genomics of the Peptoniphilaceae bacterium str. ING2-D1G, a novel acidogenic bacterium isolated from a mesophilic biogas reactorPUB | DOI | WoS | PubMed | Europe PMC
Tomazetto G, Hahnke S, Langer T, Wibberg D, Blom J, Maus I, Pühler A, Klocke M, Schlüter A (2017)
Journal of Biotechnology 257: 178-186. -
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2910373Identification of a novel mycovirus isolated from Rhizoctonia solani (AG 2-2 IV) provides further information about genome plasticity within the order TymoviralesPUB | DOI | WoS | PubMed | Europe PMC
Bartholomäus A, Wibberg D, Winkler A, Pühler A, Schlüter A, Varrelmann M (2017)
Archives of Virology 162(2): 555-559. -
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2910380New oxaphenalene derivative from marine-derived Streptomyces griseorubens sp ASMR4PUB | DOI | WoS
Hamed A, Abdel-Razek AS, Frese M, Wibberg D, El-Haddad AF, Ibrahim TMA, Kalinowski J, Sewald N, Shaaban M (2017)
Zeitschrift für Naturforschung B 72(1): 53-62. -
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2916406Genome content, metabolic pathways and biotechnological potential of the psychrophilic Arctic bacterium Psychrobacter sp DAB_AL43B, a source and a host of novel Psychrobacter-specific vectorsPUB | DOI | WoS | PubMed | Europe PMC
Lasek R, Dziewit L, Ciok A, Decewicz P, Romaniuk K, Jedrys Z, Wibberg D, Schlüter A, Pühler A, Bartosik D (2017)
Journal of Biotechnology 263: 64-74. -
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2914537Isolation and whole genome analysis of endospore-forming bacteria from heroin.PUB | DOI | WoS | PubMed | Europe PMC
Kalinowski J, Ahrens B, Al-Dilaimi A, Winkler A, Wibberg D, Schleenbecker U, Rückert C, Wölfel R, Grass G (2017)
Forensic Sci Int Genet 32: 1-6. -
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2916435Lifestyle-determining extrachromosomal replicon pAMV1 and its contribution to the carbon metabolism of the methylotrophic bacterium Paracoccus aminovorans JCM 7685PUB | DOI | WoS | PubMed | Europe PMC
Czarnecki J, Dziewit L, Puzyna M, Prochwicz E, Tudek A, Wibberg D, Schlüter A, Pühler A, Bartosik D (2017)
Environmental Microbiology 19(11): 4536-4550. -
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2913403Linking secondary metabolites to biosynthesis genes in the fungal endophyte Cyanodermella asteris: The anti-cancer bisanthraquinone skyrin.PUB | DOI | WoS | PubMed | Europe PMC
Jahn L, Schafhauser T, Wibberg D, Rückert C, Winkler A, Kulik A, Weber T, Flor L, van Pée K-H, Kalinowski J, Ludwig-Müller J, et al. (2017)
Journal of Biotechnology 257: 233-239. -
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2911777Genome sequence of Methanobacterium congolense strain Buetzberg, a hydrogenotrophic, methanogenic archaeon, isolated from a mesophilic industrial-scale biogas plant utilizing bio-wastePUB | DOI | WoS | PubMed | Europe PMC
Torres Tejerizo GA, Kim YS, Maus I, Wibberg D, Winkler A, Off S, Pühler A, Scherer P, Schlüter A (2017)
Journal of Biotechnology 247: 1-5. -
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2911462Refined annotation of the complete genome of the phytopathogenic and xanthan producing Xanthomonas campestris pv. campestris strain B100 based on RNA sequence dataPUB | DOI | WoS | PubMed | Europe PMC
Alkhateeb R, Rückert C, Rupp O, Pucker B, Hublik G, Wibberg D, Niehaus K, Pühler A, Vorhölter F-J (2017)
Journal of Biotechnology 253: 55-61. -
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2917144Genome analysis of the sugar beet pathogen Rhizoctonia solani AG2-2IIIB revealed high numbers in secreted proteins and cell wall degrading enzymesPUB | DOI | WoS | PubMed | Europe PMC
Wibberg D, Andersson L, Tzelepis G, Rupp O, Blom J, Jelonek L, Pühler A, Fogelqvist J, Varrelmann M, Schlüter A, Dixelius C (2016)
BMC Genomics 17(1): 245. -
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2907439Purpureone, an antileishmanial ergochrome from the endophytic fungus Purpureocillium lilacinumPUB | DOI | WoS
Lenta BN, Ngatchou J, Frese M, Ladoh-Yemeda F, Voundi S, Nardella F, Michalek C, Wibberg D, Ngouela S, Tsamo E, Kaiser M, et al. (2016)
Zeitschrift für Naturforschung B 71(11): 1159-1167. -
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2907431Deep Sequencing Analysis Reveals the Mycoviral Diversity of the Virome of an Avirulent Isolate of Rhizoctonia solani AG-2-2 IVPUB | DOI | WoS | PubMed | Europe PMC
Bartholomaeus A, Wibberg D, Winkler A, Pühler A, Schlüter A, Varrelmann M (2016)
PLOS ONE 11(11): e0165965. -
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2908585Draft Genome Sequence of Streptococcus anginosus BVI, a New Vaginal Pathogen CandidatePUB | DOI | WoS | PubMed | Europe PMC
Zuñiga-Bahamon A, Tobar-Tosse F, Guillermo-Ortega J, Wibberg D, Tauch A (2016)
Genome Announcements 4(6): e01417-16. -
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2906720An assemblage of Frankia Cluster II strains from California contains the canonical nod genes and also the sulfotransferase gene nodHPUB | DOI | WoS | PubMed | Europe PMC
Nguyen TV, Wibberg D, Battenberg K, Blom J, Vanden Heuvel B, Berry AM, Kalinowski J, Pawlowski K (2016)
BMC Genomics 17(1): 796. -
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2904691Genomics of high molecular weight plasmids isolated from an on-farm biopurification systemPUB | DOI | WoS | PubMed | Europe PMC
Martini MC, Wibberg D, Lozano M, Torres Tejerizo G, Albicoro FJ, Jaenicke S, van Elsas JD, Petroni A, Garcillan-Barcia MP, de la Cruz F, Schlüter A, et al. (2016)
Scientific Reports 6(1): 28284. -
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2903655
Integration event induced changes in recombinant protein productivity in Pichia pastoris discovered by whole genome sequencing and derived vector optimizationPUB | PDF | DOI | WoS | PubMed | Europe PMC
Schwarzhans JP, Wibberg D, Winkler A, Luttermann T, Kalinowski J, Friehs K (2016)
Microbial Cell Factories 15(1): 84. -
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2904993
Complete Genome Sequence of Herbinix luporumSD1D, a New Cellulose-Degrading Bacterium Isolated from a Thermophilic Biogas ReactorPUB | PDF | DOI | WoS | PubMed | Europe PMC
Koeck DE, Maus I, Wibberg D, Winkler A, Zverlov VV, Liebl W, Pühler A, Schwarz WH, Schlüter A (2016)
Genome Announcements 4(4): e00687-16. -
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2904970
Complete Genome Sequence of the MethanogenMethanoculleus bourgensisBA1 Isolated from a Biogas ReactorPUB | PDF | DOI | WoS | PubMed | Europe PMC
Maus I, Wibberg D, Winkler A, Pühler A, Schnürer A, Schlüter A (2016)
Genome Announcements 4(3): e00568-16. -
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2904978
Draft Genome Sequence of Propionisporasp. Strain 2/2-37, a New Xylan-Degrading Bacterium Isolated from a Mesophilic Biogas ReactorPUB | PDF | DOI | WoS | PubMed | Europe PMC
Koeck DE, Maus I, Wibberg D, Winkler A, Zverlov VV, Liebl W, Pühler A, Schwarz WH, Schlüter A (2016)
Genome Announcements 4(3): e00609-16. -
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2907676
Complete Genome Sequence of the Barley Pathogen Xanthomonas translucens pv. translucens DSM 18974 T (ATCC 19319 T)PUB | PDF | DOI | WoS | PubMed | Europe PMC
Jaenicke S, Bunk B, Wibberg D, Spröer C, Hersemann L, Blom J, Winkler A, Schatschneider S, Albaum S, Kölliker R, Goesmann A, et al. (2016)
Genome Announcements 4(6): e01334-16. -
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2907679
Non-canonical integration events in Pichia pastoris encountered during standard transformation analysed with genome sequencingPUB | PDF | DOI | WoS | PubMed | Europe PMC
Schwarzhans JP, Wibberg D, Winkler A, Luttermann T, Kalinowski J, Friehs K (2016)
Scientific Reports 6(1): 38952. -
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2904976
Complete Chloroplast and Mitochondrial Genome Sequences of the Hydrocarbon Oil-Producing Green MicroalgaBotryococcus brauniiRace B (Showa)PUB | PDF | DOI | WoS | PubMed | Europe PMC
Blifernez-Klassen O, Wibberg D, Winkler A, Blom J, Goesmann A, Kalinowski J, Kruse O (2016)
Genome Announcements 4(3): e00524-16. -
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2917143Complete genome sequence of Streptomyces reticuli, an efficient degrader of crystalline cellulosePUB | DOI | WoS | PubMed | Europe PMC
Wibberg D, Al-Dilaimi A, Busche T, Wedderhoff I, Schrempf H, Kalinowski J, Lucana DO de O (2016)
JOURNAL OF BIOTECHNOLOGY 222: 13-14. -
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2906715Corrigendum to "Complete genome sequence of the cellulolytic thermophile Ruminoclostridium cellulosi wild-type strain DG5 isolated from a thermophilic biogas plant (J. Biotechnol. 188 (2014) 136–137)")"PUB | DOI | WoS | PubMed | Europe PMC
Koeck DE, Wibberg D, Maus I, Winkler A, Albersmeier A, Zverlov VV, Liebl W, Pühler A, Schwarz WH, Schlüter A (2016)
Journal of Biotechnology 237: 35. -
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2905630Genetic engineering in Actinoplanes sp SE50/110-development of an intergeneric conjugation system for the introduction of actinophage-based integrative vectorsPUB | DOI | WoS | PubMed | Europe PMC
Gren T, Ortseifen V, Wibberg D, Schneiker-Bekel S, Bednarz H, Niehaus K, Zemke T, Persicke M, Pühler A, Kalinowski J (2016)
Journal of Biotechnology 232: 79-88. -
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2917142Draft genome sequence of the sugar beet pathogen Rhizoctonia solani AG2-2IIIB strain BBA69670PUB | DOI | WoS | PubMed | Europe PMC
Wibberg D, Andersson L, Rupp O, Goesmann A, Pühler A, Varrelmann M, Dixelius C, Schlüter A (2016)
Journal of Biotechnology 222: 11-12. -
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2904704Complete mitochondrial genome of the scleractinian coral Porites rusPUB | DOI | WoS | PubMed | Europe PMC
Celis JS, Wibberg D, Winkler A, Wilke T, Kalinowski J (2016)
Mitochondrial DNA 27(5): 3695-3696. -
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2903489Genomic characterization of Defluviitoga tunisiensis L3, a key hydrolytic bacterium in a thermophilic biogas plant and its abundance as determined by metagenome fragment recruitmentPUB | DOI | WoS | PubMed | Europe PMC
Maus I, Cibis KG, Bremges A, Stolze Y, Wibberg D, Tomazetto G, Blom J, Sczyrba A, König H, Pühler A, Schlüter A (2016)
Journal of Biotechnology 232: 50-60. -
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2903302Finished genome sequence and methylome of the cyanide-degrading Pseudomonas pseudoalcaligenes strain CECT5344 as resolved by single-molecule real-time sequencingPUB | DOI | WoS | PubMed | Europe PMC
Wibberg D, Bremges A, Dammann-Kalinowski T, Maus I, Igeño MI, Vogelsang R, König C, Luque-Almagro VM, Roldán MD, Sczyrba A, Moreno-Vivián C, et al. (2016)
Journal of Biotechnology 232: 61-68. -
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2902126Taxonomic analysis of the microbial community in stored sugar beets using high-throughput sequencing of different marker genesPUB | DOI | WoS | PubMed | Europe PMC
Liebe S, Wibberg D, Winkler A, Pühler A, Schlüter A, Varrelmann M (2016)
FEMS Microbiology Ecology 92(2): fiw004. -
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2905505Targeted genome editing in the rare actinomycete Actinoplanes sp SE50/110 by using the CRISPR/Cas9 SystemPUB | DOI | WoS | PubMed | Europe PMC
Wolf T, Gren T, Thieme E, Wibberg D, Zemke T, Pühler A, Kalinowski J (2016)
Journal of Biotechnology 231: 122-128. -
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2901675Intraspecies transfer of the chromosomally encoded Acinetobacter baumannii blaNDM-1 carbapenemase gene.PUB | DOI | WoS | PubMed | Europe PMC
Krahn T, Wibberg D, Maus I, Winkler A, Bontron S, Sczyrba A, Nordmann P, Pühler A, Poirel L, Schlüter A (2016)
Antimicrobial Agents and Chemotherapy 60(5): 3032-3040. -
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2901808Genome wide transcription start sites analysis of the Xanthomonas campestris pv. campestris B100 with insights into the gum gene cluster directing the biosynthesis of the exopolysaccharide xanthan.PUB | DOI | WoS | PubMed | Europe PMC
Alkhateeb R, Vorhölter F-J, Rückert C, Mentz A, Wibberg D, Hublik G, Niehaus K, Pühler A (2016)
J Biotechnol 225: 18-28. -
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2905504Comparative transcriptome analysis of the biocontrol strain Bacillus amyloliquefaciens FZB42 as response to biofilm formation analyzed by RNA sequencingPUB | DOI | WoS | PubMed | Europe PMC
Kröber M, Verwaaijen B, Wibberg D, Winkler A, Pühler A, Schlüter A (2016)
Journal of Biotechnology 231: 212-223. -
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2905629Complete genome analysis of Clostridium bornimense strain M2/40(T). A new acidogenic Clostridium species isolated from a mesophilic two-phase laboratory-scale biogas reactorPUB | DOI | WoS | PubMed | Europe PMC
Tomazetto G, Hahnke S, Koeck DE, Wibberg D, Maus I, Pühler A, Klocke M, Schlüter A (2016)
Journal of Biotechnology 232: 38-49. -
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2946456Community shifts in a well-operating agricultural biogas plant: how process variations are handled by the microbiomePUB | DOI | WoS | PubMed | Europe PMC
Theuerl S, Kohrs F, Benndorf D, Maus I, Wibberg D, Schlüter A, Kausmann R, Heiermann M, Rapp E, Reichl U, Pühler A, et al. (2015)
Applied Microbiology and Biotechnology 99(18): 7791-7803. -
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2911748Complete Genome Sequence ofAcinetobacter baumanniiCIP 70.10, a Susceptible Reference Strain for Comparative Genome AnalysesPUB | DOI | WoS | PubMed | Europe PMC
Krahn T, Wibberg D, Maus I, Winkler A, Pühler A, Poirel L, Schlüter A (2015)
Genome Announcements 3(4): e00850-15. -
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2731076Diversity and role of plasmids in adaptation of bacteria inhabiting the Lubin copper mine in Poland, an environment rich in heavy metalsPUB | DOI | WoS | PubMed | Europe PMC
Dziewit L, Pyzik A, Szuplewska M, Matlakowska R, Mielnicki S, Wibberg D, Schlüter A, Pühler A, Bartosik D (2015)
Frontiers in Microbiology 6: 152. -
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2761035Draft Genome Sequence of Pseudomonas aeruginosa Strain WS136, a Highly Cytotoxic ExoS-Positive Wound Isolate Recovered from Pyoderma GangrenosumPUB | DOI | WoS | PubMed | Europe PMC
Arnold M, Wibberg D, Blom J, Schatschneider S, Winkler A, Kutter Y, Rückert C, Albersmeier A, Albaum S, Goesmann A, Zange S, et al. (2015)
Genome announcements 3(4): e00680-15. -
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2778477Genome-guided insight into the methylotrophy of Paracoccus aminophilus JCM 7686PUB | DOI | WoS | PubMed | Europe PMC
Dziewit L, Czarnecki J, Prochwicz E, Wibberg D, Schlüter A, Pühler A, Bartosik D (2015)
Frontiers in Microbiology 6: 852. -
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2901297
Development of a Rhizoctonia solani AG1-IB Specific Gene Model Enables Comparative Genome Analyses between Phytopathogenic R-solani AG1-IA, AG1-IB, AG3 and AG8 IsolatesPUB | PDF | DOI | WoS | PubMed | Europe PMC
Wibberg D, Rupp O, Blom J, Jelonek L, Kröber M, Verwaaijen B, Goesmann A, Albaum S, Grosch R, Pühler A, Schlüter A (2015)
Plos One 10(12): e0144769. -
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2785064
Complete Genome Sequence of the Clinical Strain Acinetobacter baumannii R2090 Carrying the Chromosomally Encoded Metallo-β-Lactamase GeneblaNDM-1PUB | PDF | DOI | WoS | PubMed | Europe PMC
Krahn T, Wibberg D, Maus I, Winkler A, Nordmann P, Pühler A, Poirel L, Schlüter A (2015)
Genome Announcements 3(5): e01008-15. -
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2758144Improved genome sequence of the phytopathogenic fungus Rhizoctonia solani AG1-IB 7/3/14 as established by deep mate-pair sequencing on the MiSeq (Illumina) systemPUB | DOI | WoS | PubMed | Europe PMC
Wibberg D, Rupp O, Jelonek L, Kröber M, Verwaaijen B, Blom J, Winkler A, Goesmann A, Grosch R, Pühler A, Schlüter A (2015)
Journal of Biotechnology 203: 19-21. -
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2733521Successful heterologous expression of a novel chitinase identified by sequence analyses of the metagenome from a chitin-enriched soil samplePUB | DOI | WoS | PubMed | Europe PMC
Stoeveken J, Singh R, Kolkenbrock S, Zakrzewski M, Wibberg D, Eikmeyer FG, Pühler A, Schlüter A, Moerschbacher BM (2015)
Journal of Biotechnology 201: 60-68. -
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2717648Complete genome sequence of the novel Porphyromonadaceae bacterium strain ING2-E5B isolated from a mesophilic lab-scale biogas reactorPUB | DOI | WoS | PubMed | Europe PMC
Hahnke S, Maus I, Wibberg D, Geizecler T, Pühler A, Klocke M, Schlüter A (2015)
Journal of Biotechnology 193: 34-36. -
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2758122Draft genome of the xanthan producer Xanthomonas campestris NRRL B-1459 (ATCC 13951)PUB | DOI | WoS | PubMed | Europe PMC
Wibberg D, Alkhateeb R, Winkler A, Albersmeier A, Schatschneider S, Albaum S, Niehaus K, Hublik G, Pühler A, Vorhölter F-J (2015)
Journal of Biotechnology 204: 45-46. -
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2758134Complete genome sequence of the strain Defluviitoga tunisiensis L3, isolated from a thermophilic, production-scale biogas plantPUB | DOI | WoS | PubMed | Europe PMC
Maus I, Cibis KG, Wibberg D, Winkler A, Stolze Y, König H, Pühler A, Schlüter A (2015)
Journal of Biotechnology 203: 17-18. -
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2733509Insights into the annotated genome sequence of Methanoculleus bourgensis MS2(T), related to dominant methanogens in biogas-producing plantsPUB | DOI | WoS | PubMed | Europe PMC
Maus I, Wibberg D, Stantscheff R, Stolze Y, Blom J, Eikmeyer FG, Fracowiak J, König H, Pühler A, Schlüter A (2015)
Journal of Biotechnology 201: 43-53. -
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2901214Draft genome sequence of Herbinix hemicellulosilytica T3/55(T), a new thermophilic cellulose degrading bacterium isolated from a thermophilic biogas reactorPUB | DOI | WoS | PubMed | Europe PMC
Koeck DE, Maus I, Wibberg D, Winkler A, Zverlov VV, Liebl W, Pühler A, Schwarz WH, Schlüter A (2015)
Journal of Biotechnology 214: 59-60. -
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2764185Draft genome sequence of Talaromyces islandicus ("Penicillium islandicum") WF-38-12, a neglected mold with significant biotechnological potentialPUB | DOI | WoS | PubMed | Europe PMC
Schafhauser T, Wibberg D, Rückert C, Winkler A, Flor L, van Pée K-H, Fewer DP, Sivonen K, Jahn L, Ludwig-Müller J, Caradec T, et al. (2015)
Journal of Biotechnology 211: 101-102. -
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2732884Complete genome sequence of Paenibacillus riograndensis SBR5T, a Gram-positive diazotrophic rhizobacteriumPUB | DOI | WoS | PubMed | Europe PMC
Fernandes de Brito L, Bach E, Kalinowski J, Rückert C, Wibberg D, Passaglia L, Wendisch VF (2015)
Journal of Biotechnology 207: 30-31. -
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2731292New FeFe-hydrogenase genes identified in a metagenomic fosmid library from a municipal wastewater treatment plant as revealed by high-throughput sequencingPUB | DOI | WoS | PubMed | Europe PMC
Tomazetto G, Wibberg D, Schlüter A, Oliveira VM (2015)
Research in Microbiology 166(1): 9-19. -
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2651944Genome Sequence of the Small-Colony Variant Pseudomonas aeruginosa MH27, Isolated from a Chronic Urethral Catheter InfectionPUB | DOI | PubMed | Europe PMC
Tielen P, Wibberg D, Blom J, Rosin N, Meyer A-K, Bunk B, Schobert M, Tüpker R, Schatschneider S, Rückert C, Albersmeier A, et al. (2014)
Genome announcements 2(1). -
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2658490Architecture and functions of a multipartite genome of the methylotrophic bacterium Paracoccus aminophilus JCM 7686, containing primary and secondary chromidsPUB | DOI | WoS | PubMed | Europe PMC | GenBank
Dziewit L, Czarnecki J, Wibberg D, Radlinska M, Mrozek P, Szymczak M, Schlüter A, Pühler A, Bartosik D (2014)
BMC Genomics 15(1): 124. -
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2678800
Effect of the strain Bacillus amyloliquefaciens FZB42 on the microbial community in the rhizosphere of lettuce under field conditions analyzed by whole metagenome sequencingPUB | PDF | DOI | WoS | PubMed | Europe PMC
Kröber M, Wibberg D, Grosch R, Eikmeyer FG, Verwaaijen B, Chowdhury SP, Hartmann A, Pühler A, Schlüter A (2014)
Frontiers in Microbiology 5: 252. -
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2672926
Genome Sequence of the Acute Urethral Catheter Isolate Pseudomonas aeruginosa MH38PUB | PDF | DOI | PubMed | Europe PMC
Wibberg D, Tielen P, Blom J, Rosin N, Schobert M, Tüpker R, Schatschneider S, Spilker D, Albersmeier A, Goesmann A, Vorhölter F-J, et al. (2014)
Genome announcements 2(2): e00161-14. -
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2717549Complete genome sequence of Peptoniphilus sp strain ING2-D1G isolated from a mesophilic lab-scale completely stirred tank reactor utilizing maize silage in co-digestion with pig and cattle manure for biomethanationPUB | DOI | WoS | PubMed | Europe PMC
Geizecler T, Hahnke S, Maus I, Wibberg D, Pühler A, Schlüter A, Klocke M (2014)
Journal of Biotechnology 192: 59-61. -
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2693310Transcriptome analysis of the phytopathogenic fungus Rhizoctonia solani AG1-IB 7/3/14 applying high-throughput sequencing of expressed sequence tags (ESTs)PUB | DOI | WoS | PubMed | Europe PMC
Wibberg D, Jelonek L, Rupp O, Kröber M, Goesmann A, Grosch R, Pühler A, Schlüter A (2014)
Fungal Biology 118(9-10): 800-813. -
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2694915Whole genome sequence of Clostridium bornimense strain M2/40 isolated from a lab-scale mesophilic two-phase biogas reactor digesting maize silage and wheat strawPUB | DOI | WoS | PubMed | Europe PMC
Hahnke S, Wibberg D, Geizecler T, Pühler A, Klocke M, Schlüter A (2014)
Journal of Biotechnology 184: 199-200. -
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2685861Rhizobial plasmid pLPU83a is able to switch between different transfer machineries depending on its genomic backgroundPUB | DOI | WoS | PubMed | Europe PMC
Torres Tejerizo G, Pistorio M, Althabegoiti MJ, Cervantes L, Wibberg D, Schlüter A, Pühler A, Lagares A, Romero D, Brom S (2014)
FEMS Microbiology Ecology 88(3): 565-578. -
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2675608Genome sequence of the acid-tolerant strain Rhizobium sp LPU83PUB | DOI | WoS | PubMed | Europe PMC
Wibberg D, Torres Tejerizo G, Florencia Del Papa M, Martini C, Pühler A, Lagares A, Schlüter A, Pistorio M (2014)
Journal of Biotechnology 176: 40-41. -
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2717539Complete genome sequence of the methanogenic neotype strain Methanobacterium formicicum MFTPUB | DOI | WoS | PubMed | Europe PMC
Maus I, Stantscheff R, Wibberg D, Stolze Y, Winkler A, Pühler A, König H, Schlüter A (2014)
Journal of Biotechnology 192: 40-41. -
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2717558First draft genome sequence of the amylolytic Bacillus thermoamylovorans wild-type strain 1A1 isolated from a thermophilic biogas plantPUB | DOI | WoS | PubMed | Europe PMC
Koeck DE, Wibberg D, Maus I, Winkler A, Albersmeier A, Zverlov VV, Pühler A, Schwarz WH, Liebl W, Schlüter A (2014)
Journal of Biotechnology 192: 154-155. -
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2707731Complete genome sequence of the cellulolytic thermophile Ruminoclostridium cellulosi wild-type strain DG5 isolated from a thermophilic biogas plantPUB | DOI | WoS | PubMed | Europe PMC
Koeck DE, Wibberg D, Maus I, Winkler A, Albersmeier A, Zverlov VV, Liebl W, Pühler A, Schwarz WH, Schlüter A (2014)
Journal of Biotechnology 188: 136-137. -
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2676049IncH-type plasmid harboring the blaCTX-M-15, blaDHA-1, and qnrB4 genes recovered from animal isolatesPUB | DOI | WoS | PubMed | Europe PMC
Schlüter A, Nordmann P, Bonnin RA, Millemann Y, Eikmeyer FG, Wibberg D, Pühler A, Poirel L (2014)
Antimicrobial Agents and Chemotherapy 58(7): 3768-3773. -
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2662055Complete genome sequence of the cyanide-degrading bacterium Pseudomonas pseudoalcaligenes CECT5344PUB | DOI | WoS | PubMed | Europe PMC
Wibberg D, Luque-Almagro VM, Igeño MI, Bremges A, Roldán MD, Merchán F, Sáez LP, Guijo MI, Manso MI, Macías D, Cabello P, et al. (2014)
Journal of biotechnology 175: 67-68. -
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2605193
Detailed analysis of metagenome datasets obtained from biogas-producing microbial communities residing in biogas reactors does not indicate the presence of putative pathogenic microorganismsPUB | PDF | DOI | WoS | PubMed | Europe PMC
Eikmeyer FG, Rademacher A, Hanreich A, Hennig M, Jaenicke S, Maus I, Wibberg D, Zakrzewski M, Pühler A, Klocke M, Schlüter A (2013)
Biotechnology for Biofuels 6(1): 49. -
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2549908Establishment and interpretation of the genome sequence of the phytopathogenic fungus Rhizoctonia solani AG1-IB isolate 7/3/14PUB | DOI | WoS | PubMed | Europe PMC
Wibberg D, Jelonek L, Rupp O, Kröber M, Eikmeyer FG, Goesmann A, Hartmann A, Borriss R, Grosch R, Pühler A, Schlüter A (2013)
Journal of Biotechnology 167(2): 142-155. -
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2633427Draft Genome Sequence of Sinorhizobium meliloti RU11/001, a model organism for flagellum structure, motility and chemotaxisPUB | DOI | WoS | PubMed | Europe PMC
Wibberg D, Blom J, Rückert C, Winkler A, Albersmeier A, Pühler A, Schlüter A, Scharf BE (2013)
Journal of Biotechnology 168(4): 731-733. -
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2645247Complete genome sequence of the hydrogenotrophic Archaeon Methanobacterium sp Mb1 isolated from a production-scale biogas plantPUB | DOI | WoS | PubMed | Europe PMC
Maus I, Wibberg D, Stantscheff R, Cibis K, Eikmeyer FG, König H, Pühler A, Schlüter A (2013)
Journal of Biotechnology 168(4): 734-736. -
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2609868Taxonomic Profiling and Metagenome Analysis of a Microbial Community from a Habitat Contaminated with Industrial DischargesPUB | DOI | WoS | PubMed | Europe PMC
Shah V, Zakrzewski M, Wibberg D, Eikmeyer FG, Schlüter A, Madamwar D (2013)
Microbial Ecology 66(3): 533-550. -
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2635526Draft genome sequence of the cellulolytic Clostridium thermocellum wild-type strain BC1 playing a role in cellulosic biomass degradationPUB | DOI | WoS | PubMed | Europe PMC
Koeck DE, Wibberg D, Koellmeier T, Blom J, Jaenicke S, Winkler A, Albersmeier A, Zverlov VV, Pühler A, Schwarz WH, Schlüter A (2013)
Journal of Biotechnology 168(1): 62-63. -
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2557080Complete sequence of broad-host-range plasmid pNOR-2000 harbouring the metallo-beta-lactamase gene blaVIM-2 from Pseudomonas aeruginosaPUB | DOI | WoS | PubMed | Europe PMC
Bonnin RA, Poirel L, Nordmann P, Eikmeyer FG, Wibberg D, Pühler A, Schlüter A (2013)
Journal of Antimicrobial Chemotherapy 68(5): 1060-1065. -
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2548286Draft whole genome sequence of the cyanide-degrading bacterium Pseudomonas pseudoalcaligenes CECT5344PUB | DOI | WoS | PubMed | Europe PMC
Luque-Almagro VM, Acera F, Igeño MI, Wibberg D, Roldán MD, Sáez LP, Hennig M, Quesada A, Huertas MJ, Blom J, Merchán F, et al. (2013)
Environmental Microbiology 15(1): 253-270. -
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2546244The IncF plasmid pRSB225 isolated from a municipal wastewater treatment plant’s on-site preflooder combining antibiotic resistance and putative virulence functions is highly related to virulence plasmids identified in pathogenic E. coli isolatesPUB | DOI | WoS | PubMed | Europe PMC
Wibberg D, Szczepanowski R, Eikmeyer FG, Pühler A, Schlüter A (2013)
Plasmid 69(2): 127-137. -
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2472279The complete genome sequences of four new IncN plasmids from wastewater treatment plant effluent provide new insights into IncN plasmid diversity and evolutionPUB | DOI | WoS | PubMed | Europe PMC | GenBank
Eikmeyer FG, Hadiati A, Szczepanowski R, Wibberg D, Schneiker-Bekel S, Rogers LM, Brown CB, Top EM, Pühler A, Schlüter A (2012)
Plasmid 68(1): 13-24. -
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2490535Insights into the completely annotated genome of Lactobacillus buchneri CD034, a strain isolated from stable grass silagePUB | DOI | WoS | PubMed | Europe PMC
Heinl S, Wibberg D, Eikmeyer FG, Szczepanowski R, Blom J, Linke B, Goesmann A, Grabherr R, Schwab H, Pühler A, Schlüter A (2012)
Journal of Biotechnology 161(2): 153-166. -
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2530446IncP-1 beta plasmids of Comamonas sp and Delftia sp strains isolated from a wastewater treatment plant mediate resistance to and decolorization of the triphenylmethane dye crystal violetPUB | DOI | WoS | PubMed | Europe PMC
Stolze Y, Eikmeyer FG, Wibberg D, Brandis G, Karsten C, Krahn I, Schneiker-Bekel S, Viehöver P, Barsch A, Keck M, Top EM, et al. (2012)
Microbiology 158(Pt_8): 2060-2072. -
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2526298Complete Genome Sequence of the Hydrogenotrophic, Methanogenic Archaeon Methanoculleus bourgensis Strain MS2T, Isolated from a Sewage Sludge DigesterPUB | DOI | WoS | PubMed | Europe PMC
Maus I, Wibberg D, Stantscheff R, Eikmeyer FG, Seffner A, Boelter J, Szczepanowski R, Blom J, Jaenicke S, König H, Pühler A, et al. (2012)
Journal of Bacteriology 194(19): 5487-5488. -
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2354731Complete genome sequencing of Agrobacterium sp. H13-3, the former Rhizobium lupini H13-3, reveals a tripartite genome consisting of a circular and a linear chromosome and an accessory plasmid but lacking a tumor-inducing Ti-plasmidPUB | DOI | WoS | PubMed | Europe PMC
Wibberg D, Blom J, Jaenicke S, Kollin F, Rupp O, Scharf B, Schneiker-Bekel S, Szczepanowski R, Goesmann A, Setubal JC, Schmitt R, et al. (2011)
Journal of Biotechnology 155(1): 50-62. -
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2317371High-quality genome sequence of Pichia pastoris CBS7435PUB | DOI | WoS | PubMed | Europe PMC
Küberl A, Schneider J, Thallinger GG, Anderl I, Wibberg D, Hajek T, Jaenicke S, Brinkrolf K, Goesmann A, Szczepanowski R, Pühler A, et al. (2011)
Journal of Biotechnology 154(4): 312-320. -
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2326465First genomic analysis of the broad-host-range Rhizobium sp LPU83 strain, a member of the low-genetic diversity Oregon-like Rhizobium sp groupPUB | DOI | WoS | PubMed | Europe PMC
Torres Tejerizo G, Florencia Del Papa M, Draghi W, Lozano M, de los Angeles Giusti M, Martini C, Eugenia Salas M, Salto I, Wibberg D, Szczepanowski R, Weidner S, et al. (2011)
Journal of Biotechnology 155(1): 3-10. -
2011 | Zeitschriftenaufsatz | Im Druck | PUB-ID: 2017892The complete genome sequence of the dominant Sinorhizobium meliloti field isolate SM11 extends the S. meliloti pan-genomePUB | DOI | WoS | PubMed | Europe PMC
Schneiker-Bekel S, Wibberg D, Bekel T, Blom J, Linke B, Neuweger H, Stiens M, Vorhölter F-J, Weidner S, Goesmann A, Pühler A, et al. (In Press)
Journal of Biotechnology 155(1): 20-33.