71 Publikationen

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[71]
2018 | Zeitschriftenaufsatz | PUB-ID: 2920777
Binning Enables Efficient Host Genome Reconstruction in Cnidarian Holobionts
Celis JS, Wibberg D, Ramírez-Portilla C, Rupp O, Sczyrba A, Winkler A, Kalinowski J, Wilke T (2018)
GigaScience 7(7): giy075.
PUB| DOI | WoS | PubMed | Europe PMC
 
[70]
2018 | Zeitschriftenaufsatz | PUB-ID: 2920723
AMBER: Assessment of Metagenome BinnERs
Meyer F, Hofmann P, Belmann P, Garrido-Oter R, Fritz A, Sczyrba A, McHardy AC (2018)
GigaScience: giy069.
PUB| DOI | WoS | PubMed | Europe PMC
 
[69]
2018 | Zeitschriftenaufsatz | PUB-ID: 2916929
Targeted in situ metatranscriptomics for selected taxa from mesophilic and thermophilic biogas plants
Stolze Y, Bremges A, Maus I, Pühler A, Sczyrba A, Schlüter A (2018)
Microbial Biotechnology 11(4): 667-679.
PUB| DOI | WoS | PubMed | Europe PMC
 
[68]
2018 | Zeitschriftenaufsatz | PUB-ID: 2920750
Characterization of Bathyarchaeota genomes assembled from metagenomes of biofilms residing in mesophilic and thermophilic biogas reactors
Maus I, Rumming M, Bergmann I, Heeg K, Pohl M, Nettmann E, Jaenicke S, Blom J, Pühler A, Schlüter A, Sczyrba A, et al. (2018)
Biotechnology for Biofuels 11: 167.
PUB| DOI | WoS | PubMed | Europe PMC
 
[67]
2018 | Zeitschriftenaufsatz | PUB-ID: 2915890
Analyzing large scale genomic data on the cloud with Sparkhit
Huang L, Krüger J, Sczyrba A (2018)
Bioinformatics 34(9): 1457-1465.
PUB| DOI | WoS | PubMed | Europe PMC
 
[66]
2018 | Zeitschriftenaufsatz | PUB-ID: 2918275
Insights into the fundamental physiology of the uncultured Fe-oxidizing bacterium Leptothrix ochracea
Fleming EJ, Woyke T, Donatello AR, Kuypers MMM, Sczyrba A, Littmann S, Emerson D (2018)
Applied and Environmental Microbiology 84(9): e02239-17.
PUB| DOI | WoS | PubMed | Europe PMC
 
[65]
2018 | Zeitschriftenaufsatz | PUB-ID: 2914959
Invasion ecology applied to inoculation of plant growth promoting bacteria through a novel SIMPER-PCA approach
da Schoren Costa P, Bolzan de Campos S, Albersmeier A, Dirksen P, Pereira Dresseno AL, Andrade Pais dos Santos OJ, Lima Milani KM, Etto RM, Battistus AG, Peres Rodrigues da Costa AC, Martinez de Oliveira AL, et al. (2018)
Plant and Soil 422(1-2): 467-478.
PUB| DOI | WoS
 
[64]
2017 | Zeitschriftenaufsatz | PUB-ID: 2915516
Genomics and prevalence of bacterial and archaeal isolates from biogas-producing microbiomes
Maus I, Bremges A, Stolze Y, Hahnke S, Cibis KG, Koeck DE, Kim YS, Kreubel J, Hassa J, Wibberg D, Weimann A, et al. (2017)
Biotechnology for Biofuels 10(1): 264.
PUB | PDF| DOI | WoS | PubMed | Europe PMC
 
[63]
2017 | Zeitschriftenaufsatz | PUB-ID: 2909153
Rapid protein alignment in the cloud: HAMOND combines fast DIAMOND alignments with Hadoop parallelism
Yu J, Blom J, Sczyrba A, Goesmann A (2017)
Journal of Biotechnology 257: 58-60.
PUB| DOI | WoS | PubMed | Europe PMC
 
[62]
2017 | Zeitschriftenaufsatz | PUB-ID: 2913556
Bioinformatics for NGS-based metagenomics and the application to biogas research
Jünemann S, Kleinbölting N, Jaenicke S, Henke C, Hassa J, Nelkner J, Stolze Y, Albaum S, Schlüter A, Goesmann A, Sczyrba A, et al. (2017)
Journal of Biotechnology 261(SI): 10-23.
PUB| DOI | Download (ext.) | WoS | PubMed | Europe PMC
 
[61]
2017 | Datenpublikation | PUB-ID: 2914921
Sparkhit evaluation data set
Huang L, Krüger J, Sczyrba A (2017) : Bielefeld University. doi:10.4119/unibi/2914921.
PUB | Dateien verfügbar| DOI
 
[60]
2017 | Zeitschriftenaufsatz | PUB-ID: 2914367
Critical Assessment of Metagenome Interpretation—a benchmark of metagenomics software
Sczyrba A, Hofmann P, Belmann P, Koslicki D, Janssen S, Dröge J, Gregor I, Majda S, Fiedler J, Dahms E, Bremges A, et al. (2017)
Nature Methods 14(11): 1063-1071.
PUB| DOI | WoS | PubMed | Europe PMC
 
[59]
2016 | Zeitschriftenaufsatz | PUB-ID: 2904815
Identification and genome reconstruction of abundant distinct taxa in microbiomes from one thermophilic and three mesophilic production-scale biogas plants
Stolze Y, Bremges A, Rumming M, Henkel C, Maus I, Pühler A, Sczyrba A, Schlüter A (2016)
Biotechnology for Biofuels 9: 156.
PUB | PDF| DOI | WoS | PubMed | Europe PMC
 
[58]
2016 | Zeitschriftenaufsatz | PUB-ID: 2907633
acdc – Automated Contamination Detection and Confidence estimation for single-cell genome data
Lux M, Krüger J, Rinke C, Maus I, Schlüter A, Woyke T, Sczyrba A, Hammer B (2016)
BMC Bioinformatics 17: 543.
PUB | PDF| DOI | WoS | PubMed | Europe PMC
 
[57]
2016 | Zeitschriftenaufsatz | PUB-ID: 2904836
Proteotyping of biogas plant microbiomes separates biogas plants according to process temperature and reactor type
Heyer R, Benndorf D, Kohrs F, De Vrieze J, Boon N, Hoffmann M, Rapp E, Schlüter A, Sczyrba A, Reichl U (2016)
Biotechnology for Biofuels 9(1): 155.
PUB| DOI | WoS | PubMed | Europe PMC
 
[56]
2016 | Zeitschriftenaufsatz | PUB-ID: 2903489
Genomic characterization of Defluviitoga tunisiensis L3, a key hydrolytic bacterium in a thermophilic biogas plant and its abundance as determined by metagenome fragment recruitment
Maus I, Cibis KG, Bremges A, Stolze Y, Wibberg D, Tomazetto G, Blom J, Sczyrba A, König H, Pühler A, Schlüter A (2016)
Journal of Biotechnology 232: 50-60.
PUB| DOI | WoS | PubMed | Europe PMC
 
[55]
2016 | Zeitschriftenaufsatz | PUB-ID: 2903302
Finished genome sequence and methylome of the cyanide-degrading Pseudomonas pseudoalcaligenes strain CECT5344 as resolved by single-molecule real-time sequencing
Wibberg D, Bremges A, Dammann-Kalinowski T, Maus I, Igeño MI, Vogelsang R, König C, Luque-Almagro VM, Roldán MD, Sczyrba A, Moreno-Vivián C, et al. (2016)
Journal of Biotechnology 232: 61-68.
PUB| DOI | WoS | PubMed | Europe PMC
 
[54]
2016 | Zeitschriftenaufsatz | PUB-ID: 2902190 PUB| DOI | WoS | PubMed | Europe PMC
 
[53]
2016 | Zeitschriftenaufsatz | PUB-ID: 2901418
Soil suppressiveness and its relations with the microbial community in a Brazilian subtropical agroecosystem under different management systems
Campos SB, Lisboa BB, Camargo FAO, Bayer C, Sczyrba A, Dirksen P, Albersmeier A, Kalinowski J, Beneduzi A, Costa PB, Passaglia LMP, et al. (2016)
Soil Biology and Biochemistry 96: 191-197.
PUB| DOI | WoS
 
[52]
2016 | Zeitschriftenaufsatz | PUB-ID: 2901729
MeCorS: Metagenome-enabled error correction of single cell sequencing reads
Bremges A, Singer E, Woyke T, Sczyrba A (2016)
Bioinformatics 32(14): 2199-2201.
PUB| DOI | WoS | PubMed | Europe PMC
 
[51]
2016 | Zeitschriftenaufsatz | PUB-ID: 2900928
Back to the future of soil metagenomics
Nesme J, Achouak W, Agathos S, Bailey M, Baldrian P, Brunel D, Frostegard A, Heulin T, Jansson JK, Jurkevitch E, Kowalchuk GA, et al. (2016)
Frontiers in Microbiology 7: 73.
PUB| DOI | WoS | PubMed | Europe PMC
 
[50]
2016 | Zeitschriftenaufsatz | PUB-ID: 2901675
Intraspecies transfer of the chromosomally encoded Acinetobacter baumannii blaNDM-1 carbapenemase gene.
Krahn T, Wibberg D, Maus I, Winkler A, Bontron S, Sczyrba A, Nordmann P, Pühler A, Poirel L, Schlüter A (2016)
Antimicrobial Agents and Chemotherapy 60(5): 3032-3040.
PUB| DOI | WoS | PubMed | Europe PMC
 
[49]
2016 | Zeitschriftenaufsatz | PUB-ID: 2905260
Unraveling the microbiome of a thermophilic biogas plant by metagenome and metatranscriptome analysis complemented by characterization of bacterial and archaeal isolates
Maus I, Koeck DE, Cibis KG, Hahnke S, Kim YS, Langer T, Kreubel J, Erhard M, Bremges A, Off S, Stolze Y, et al. (2016)
Biotechnology for Biofuels 9(1): 171.
PUB| DOI | WoS | PubMed | Europe PMC
 
[48]
2016 | Zeitschriftenaufsatz | PUB-ID: 2904234
An integrated metagenome and -proteome analysis of the microbial community residing in a biogas production plant
Ortseifen V, Stolze Y, Maus I, Sczyrba A, Bremges A, Albaum S, Jaenicke S, Fracowiak J, Pühler A, Schlüter A (2016)
Journal of Biotechnology 231: 268-279.
PUB| DOI | WoS | PubMed | Europe PMC
 
[47]
2015 | Zeitschriftenaufsatz | PUB-ID: 2762833
Fractionation of biogas plant sludge material improves metaproteomic characterization to investigate metabolic activity of microbial communities
Kohrs F, Wolter S, Benndorf D, Heyer R, Hoffmann M, Rapp E, Bremges A, Sczyrba A, Schlüter A, Reichl U (2015)
Proteomics 15(20): 3585-3589.
PUB| DOI | WoS | PubMed | Europe PMC
 
[46]
2015 | Zeitschriftenaufsatz | PUB-ID: 2764906
Deeply sequenced metagenome and metatranscriptome of a biogas-producing microbial community from an agricultural production-scale biogas plant
Bremges A, Maus I, Belmann P, Eikmeyer FG, Winkler A, Albersmeier A, Pühler A, Schlüter A, Sczyrba A (2015)
GigaScience 4(1): 33.
PUB | PDF| DOI | WoS | PubMed | Europe PMC
 
[45]
2015 | Zeitschriftenaufsatz | PUB-ID: 2726183
Genomic insights into the uncultivated marine Zetaproteobacteria at Loihi Seamount
Field EK, Sczyrba A, Lyman AE, Harris CC, Woyke T, Stepanauskas R, Emerson D (2015)
The ISME journal 9: 857-870.
PUB| DOI | WoS | PubMed | Europe PMC
 
[44]
2015 | Zeitschriftenaufsatz | PUB-ID: 2782501
Bioboxes: standardised containers for interchangeable bioinformatics software
Belmann P, Dröge J, Bremges A, McHardy AC, Sczyrba A, Barton MD (2015)
GigaScience 4: 47.
PUB| DOI | WoS | PubMed | Europe PMC
 
[43]
2015 | Konferenzbeitrag | PUB-ID: 2901612
Automatic discovery of metagenomic structure
Lux M, Sczyrba A, Hammer B (2015)
In: 2015 International Joint Conference on Neural Networks (IJCNN). Institute of Electrical & Electronics Engineers (IEEE).
PUB| DOI
 
[42]
2015 | Zeitschriftenaufsatz | PUB-ID: 2726156
Targeted diversity generation by intraterrestrial archaea and archaeal viruses
Paul BG, Bagby SC, Czornyj E, Arambula D, Handa S, Sczyrba A, Ghosh P, Miller JF, Valentine DL (2015)
Nature Communications 6: 6585.
PUB| DOI | WoS | PubMed | Europe PMC
 
[41]
2015 | Kurzbeitrag Konferenz | PUB-ID: 2901466
A Bioinformatics Pipeline for the Detection of β-lactamase Genes in Metagenome Sequence Data and its Application to Production-Scale Biogas Plants
Osterholz B, Wiebke P, Fust A, Rumming M, Schlüter A, Sczyrba A (2015)
Presented at the 3rd International Symposium on the environmental Dimension of Antibiotic Resistance, Wernigerode.
PUB
 
[40]
2015 | Report | PUB-ID: 2901613
Automated Contamination Detection in Single-Cell Sequencing
Lux M, Hammer B, Sczyrba A (2015)
Cold Spring Harbor Laboratory Press.
PUB| DOI
 
[39]
2014 | Zeitschriftenaufsatz | PUB-ID: 2685992
Temporal dynamics of fibrolytic and methanogenic rumen microorganisms during in situ incubation of switchgrass determined by 16S rRNA gene profiling
Piao H, Lachman M, Malfatti S, Sczyrba A, Knierim B, Auer M, Tringe SG, Mackie RI, Yeoman CJ, Hess M (2014)
Frontiers in Microbiology 5(307).
PUB| DOI | Download (ext.) | WoS | PubMed | Europe PMC
 
[38]
2014 | Zeitschriftenaufsatz | PUB-ID: 2654433
The Candidate Phylum Poribacteria by Single-Cell Genomics: New Insights into Phylogeny, Cell-Compartmentation, Eukaryote-Like Repeat Proteins, and Other Genomic Features
Kamke J, Rinke C, Schwientek P, Mavromatis K, Ivanova N, Sczyrba A, Woyke T, Hentschel U (2014)
PLoS ONE 9(1): e87353.
PUB| DOI | WoS | PubMed | Europe PMC
 
[37]
2014 | Zeitschriftenaufsatz | PUB-ID: 2689051
Comparative single-cell genomics reveals potential ecological niches for the freshwater acI Actinobacteria lineage
Ghylin TW, Garcia SL, Moya F, Oyserman BO, Schwientek P, Forest KT, Mutschler J, Dwulit-Smith J, Chan L-K, Martinez-Garcia M, Sczyrba A, et al. (2014)
The ISME Journal 8(12): 2503-2516.
PUB| DOI | WoS | PubMed | Europe PMC
 
[36]
2014 | Zeitschriftenaufsatz | PUB-ID: 2698163
Phylogenomically Guided Identification of Industrially Relevant GH1 β-Glucosidases through DNA Synthesis and Nanostructure-Initiator Mass Spectrometry
Heins RA, Cheng X, Nath S, Deng K, Bowen BP, Chivian DC, Datta S, Friedland GD, D'Haeseleer P, Wu D, Tran-Gyamfi M, et al. (2014)
ACS chemical biology 9(9): 2082-2091.
PUB| DOI | WoS | PubMed | Europe PMC
 
[35]
2014 | Zeitschriftenaufsatz | PUB-ID: 2672695
Genomic and metabolic diversity of marine group I thaumarchaeota in the mesopelagic of two subtropical gyres
Swan BK, Chaffin MD, Martinez-Garcia M, Morrison HG, Field EK, Poulton NJ, Masland EDP, Harris CC, Sczyrba A, Chain PSG, Koren S, et al. (2014)
PloS one 9(4): 95380.
PUB| DOI | WoS | PubMed | Europe PMC
 
[34]
2014 | Zeitschriftenaufsatz | PUB-ID: 2665333
Mycoplasma salivarium as a Dominant Coloniser of Fanconi Anaemia Associated Oral Carcinoma
Henrich B, Rumming M, Sczyrba A, Velleuer E, Dietrich R, Gerlach W, Gombert M, Rahn S, Stoye J, Borkhardt A, Fischer U (2014)
PLoS ONE 9(3): e92297.
PUB| DOI | WoS | PubMed | Europe PMC
 
[33]
2014 | Zeitschriftenaufsatz | PUB-ID: 2662055
Complete genome sequence of the cyanide-degrading bacterium Pseudomonas pseudoalcaligenes CECT5344
Wibberg D, Luque-Almagro VM, Igeño MI, Bremges A, Roldán MD, Merchán F, Sáez LP, Guijo MI, Manso MI, Macías D, Cabello P, et al. (2014)
Journal of biotechnology 175: 67-68.
PUB| DOI | WoS | PubMed | Europe PMC
 
[32]
2013 | Konferenzbeitrag | PUB-ID: 2909357
Nonlinear dimensionality reduction for cluster identification in metagenomic samples
Gisbrecht A, Hammer B, Mokbel B, Sczyrba A (2013)
In: IV. 174-179.
PUB
 
[31]
2013 | Konferenzbeitrag | PUB-ID: 2623500
Nonlinear dimensionality reduction for cluster identification in metagenomic samples
Gisbrecht A, Hammer B, Mokbel B, Sczyrba A (2013)
In: 17th International Conference on Information Visualisation IV 2013. Banissi E (Ed); 174-179.
PUB
 
[30]
2013 | Zeitschriftenaufsatz | PUB-ID: 2613567
Insights into the phylogeny and coding potential of microbial dark matter
Rinke C, Schwientek P, Sczyrba A, Ivanova NN, Anderson IJ, Cheng J-F, Darling A, Malfatti S, Swan BK, Gies EA, Dodsworth JA, et al. (2013)
Nature 499(7459): 431-437.
PUB| DOI | WoS | PubMed | Europe PMC
 
[29]
2013 | Zeitschriftenaufsatz | PUB-ID: 2563424
UGA is an additional glycine codon in uncultured SR1 bacteria from the human microbiota
Campbell JH, O'Donoghue P, Campbell AG, Schwientek P, Sczyrba A, Woyke T, Söll D, Podar M (2013)
Proceedings of the National Academy of Sciences of the United States of America 110(14): 5540-5545.
PUB| DOI | WoS | PubMed | Europe PMC
 
[28]
2013 | Zeitschriftenaufsatz | PUB-ID: 2638234
Single-cell genomics reveal low recombination frequencies in freshwater bacteria of the SAR11 clade
Zaremba-Niedzwiedzka K, Viklund J, Zhao W, Ast J, Sczyrba A, Woyke T, McMahon K, Bertilsson S, Stepanauskas R, Andersson SG (2013)
Genome biology 14(11): R130.
PUB| DOI | WoS | PubMed | Europe PMC
 
[27]
2013 | Zeitschriftenaufsatz | PUB-ID: 2641352
Single-cell genomics reveals complex carbohydrate degradation patterns in poribacterial symbionts of marine sponges
Kamke J, Sczyrba A, Ivanova N, Schwientek P, Rinke C, Mavromatis K, Woyke T, Hentschel U (2013)
The ISME journal 7(12): 2287-2300.
PUB| DOI | WoS | PubMed | Europe PMC
 
[26]
2013 | Zeitschriftenaufsatz | PUB-ID: 2563543
Multiple Single-Cell Genomes Provide Insight into Functions of Uncultured Deltaproteobacteria in the Human Oral Cavity
Campbell AG, Campbell JH, Schwientek P, Woyke T, Sczyrba A, Allman S, Beall CJ, Griffen A, Leys E, Podar M (2013)
PLoS ONE 8(3): e59361.
PUB| DOI | WoS | PubMed | Europe PMC
 
[25]
2013 | Zeitschriftenaufsatz | PUB-ID: 2613623
Prevalent genome streamlining and latitudinal divergence of planktonic bacteria in the surface ocean
Swan BK, Tupper B, Sczyrba A, Lauro FM, Martinez-Garcia M, González JM, Luo H, Wright JJ, Landry ZC, Hanson NW, Thompson BP, et al. (2013)
Proceedings of the National Academy of Sciences of the United States of America 110(28): 11463-11468.
PUB| DOI | WoS | PubMed | Europe PMC
 
[24]
2012 | Zeitschriftenaufsatz | PUB-ID: 2518330
Metabolic potential of a single cell belonging to one of the most abundant lineages in freshwater bacterioplankton
Garcia SL, McMahon KD, Martinez-Garcia M, Srivastava A, Sczyrba A, Stepanauskas R, Grossart H-P, Woyke T, Warnecke F (2012)
The ISME journal 7(1): 137-147.
PUB| DOI | WoS | PubMed | Europe PMC
 
[23]
2012 | Zeitschriftenaufsatz | PUB-ID: 2547307
Personalized cloud-based bioinformatics services for research and education: use cases and the elasticHPC package
El-Kalioby M, Abouelhoda M, Krüger J, Giegerich R, Sczyrba A, Wall DP, Tonellato P (2012)
BMC Bioinformatics 13(Suppl 17): S22.
PUB| DOI | WoS | PubMed | Europe PMC
 
[22]
2011 | Zeitschriftenaufsatz | PUB-ID: 2329885
Potential for Chemolithoautotrophy Among Ubiquitous Bacteria Lineages in the Dark Ocean
Swan BK, Martinez-Garcia M, Preston CM, Sczyrba A, Woyke T, Lamy D, Reinthaler T, Poulton NJ, Masland EDP, Gomez ML, Sieracki ME, et al. (2011)
Science 333(6047): 1296-1300.
PUB| DOI | WoS | PubMed | Europe PMC
 
[21]
2011 | Zeitschriftenaufsatz | PUB-ID: 2351462
High-Throughput In Vitro Glycoside Hydrolase (HIGH) Screening for Enzyme Discovery
Kim T-W, Chokhawala HA, Hess M, Dana CM, Baer Z, Sczyrba A, Rubin EM, Blanch HW, Clark DS (2011)
Angewandte Chemie 123(47): 11411-11414.
PUB| DOI | PubMed | Europe PMC
 
[20]
2011 | Zeitschriftenaufsatz | PUB-ID: 2789582
Genome sequence of the 1,4-dioxane-degrading Pseudonocardia dioxanivorans strain CB1190
Sales CM, Mahendra S, Grostern A, Parales RE, Goodwin LA, Woyke T, Nolan M, Lapidus A, Chertkov O, Ovchinnikova G, Sczyrba A, et al. (2011)
Journal of Bacteriology 193(17): 4549-4550.
PUB| DOI | Download (ext.) | WoS | PubMed | Europe PMC | GenBank
 
[19]
2011 | Zeitschriftenaufsatz | PUB-ID: 2410148
Decontamination of MDA Reagents for Single Cell Whole Genome Amplification
Woyke T, Sczyrba A, Lee J, Rinke C, Tighe D, Clingenpeel S, Malmstrom R, Stepanauskas R, Cheng J-F (2011)
PLoS ONE 6(10): e26161.
PUB| DOI | WoS | PubMed | Europe PMC
 
[18]
2011 | Zeitschriftenaufsatz | PUB-ID: 1991643
Metagenomic discovery of biomass-degrading genes and genomes from cow rumen
Hess M, Sczyrba A, Egan R, Kim TW, Chokhawala H, Schroth G, Luo S, Clark DS, Chen F, Zhang T, Mackie RI, et al. (2011)
Science 331(6016): 463-467.
PUB| DOI | WoS | PubMed | Europe PMC
 
[17]
2010 | Zeitschriftenaufsatz | PUB-ID: 1991615
Meeting report: the terabase metagenomics workshop and the vision of an Earth microbiome project
Gilbert JA, Meyer F, Antonopoulos D, Balaji P, Brown CT, Desai N, Eisen JA, Evers D, Field D, Feng W, Huson D, et al. (2010)
Stand Genomic Sci 3(3): 243-248.
PUB| DOI | PubMed | Europe PMC
 
[16]
2008 | Zeitschriftenaufsatz | PUB-ID: 1784020
GeneFisher-P: variations of GeneFisher as processes in Bio-jETI
Lamprecht A-L, Margaria T, Steffen B, Sczyrba A, Hartmeier S, Giegerich R (2008)
BMC Bioinformatics 9(Suppl 4): S13.
PUB | PDF| DOI | WoS | PubMed | Europe PMC
 
[15]
2008 | Zeitschriftenaufsatz | PUB-ID: 1588303
Two interactive bioinformatics courses at the bielefeld university bioinformatics server
Sczyrba A, Konermann S, Giegerich R (2008)
BRIEFINGS IN BIOINFORMATICS 9(3): 243-249.
PUB| DOI | WoS | PubMed | Europe PMC
 
[14]
2006 | Zeitschriftenaufsatz | PUB-ID: 1599756
IsoSVM - Distinguishing isoforms and paralogs on the protein level
Spitzer M, Lorkowski S, Cullen P, Sczyrba A, Fuellen G (2006)
BMC Bioinformatics 7(1): 110.
PUB | PDF| DOI | WoS | PubMed | Europe PMC
 
[13]
2005 | Zeitschriftenaufsatz | PUB-ID: 1773613
XenDB: Full length cDNA prediction and cross species mapping in Xenopus laevis
Sczyrba A, Beckstette M, Brivanlou AH, Giegerich R, Altmann CR (2005)
BMC Genomics 6(1): 123.
PUB | PDF| DOI | WoS | PubMed | Europe PMC
 
[12]
2004 | Zeitschriftenaufsatz | PUB-ID: 2383529
Genlight: Interactive high-throughput sequence analysis and comparative genomics
Beckstette M, Mailänder JT, Marhöfer RJ, Sczyrba A, Ohlebusch E, Giegerich R, Selzer PM (2004)
Journal of Integrative Bioinformatics 1(1): 0008.
PUB| DOI
 
[11]
2004 | Konferenzbeitrag | PUB-ID: 2383536
Genlight: Interactive high-throughput sequence analysis and comparative genomics
Beckstette M, Sczyrba A, Selzer PM (2004)
In: Proceedings of the German Conference on Bioinformatics. Lecture Notes in Informatics: GI: 179-186.
PUB
 
[10]
2004 | Konferenzbeitrag | PUB-ID: 2383561
Identification of 10,500 Xenopus laevis Full Length Clones through EST Clustering and Sequence Analysis
Sczyrba A, Beckstette M, Giegerich R, Altman C (2004)
In: Proceedings of the German Conference on Bioinformatics. Lecture Notes in Informatics: GI.
PUB
 
[9]
2004 | Zeitschriftenaufsatz | PUB-ID: 1607400
AGenDA: gene prediction by cross-species sequence comparison
Taher L, Rinner O, Garg S, Sczyrba A, Morgenstern B (2004)
Nucleic Acids Research 32(Web Server): W305-W308.
PUB | PDF| DOI | WoS | PubMed | Europe PMC
 
[8]
2004 | Zeitschriftenaufsatz | PUB-ID: 1607394
e2g: an interactive web-based server for efficiently mapping large EST and cDNA sets to genomic sequences
Krüger J, Sczyrba A, Kurtz S, Giegerich R (2004)
NUCLEIC ACIDS RESEARCH 32(Web Server): W301-W304.
PUB | PDF| DOI | WoS | PubMed | Europe PMC
 
[7]
2003 | Zeitschriftenaufsatz | PUB-ID: 1609260
EMMA: a platform for consistent storage and efficient analysis of microarray data
Dondrup M, Goesmann A, Bartels D, Kalinowski J, Krause L, Linke B, Rupp O, Sczyrba A, Pühler A, Meyer F (2003)
JOURNAL OF BIOTECHNOLOGY 106(2-3): 135-146.
PUB| DOI | WoS | PubMed | Europe PMC
 
[6]
2003 | Zeitschriftenaufsatz | PUB-ID: 1612470
AltAVisT: Comparing alternative multiple sequence alignments
Morgenstern B, Goel S, Sczyrba A, Dress A (2003)
BIOINFORMATICS 19(3): 425-426.
PUB| DOI | WoS | PubMed | Europe PMC
 
[5]
2003 | Zeitschriftenaufsatz | PUB-ID: 1773844
RNA-related tools on the Bielefeld Bioinformatics Server
Sczyrba A, Krüger J, Mersch H, Kurtz S, Giegerich R (2003)
Nucleic Acids Research 31(13): 3767-3770.
PUB | Dateien verfügbar| DOI | WoS | PubMed | Europe PMC
 
[4]
2003 | Zeitschriftenaufsatz | PUB-ID: 1610494
AGenDA: homology-based gene prediction
Taher L, Rinner O, Garg S, Sczyrba A, Brudno M, Batzoglou S, Morgenstern B (2003)
BIOINFORMATICS 19(12): 1575-1577.
PUB| DOI | WoS | PubMed | Europe PMC
 
[3]
2001 | Zeitschriftenaufsatz | PUB-ID: 1897716
Homology-based annotation yields 1,042 new candidate genes in the Drosophila melanogaster genome
Gopal S, Schroeder M, Pieper U, Sczyrba A, Aytekin-Kurban G, Bekiranov S, Fajardo JE, Eswar N, Sanchez R, Sali A, Gaasterland T (2001)
Nat Genet 27(3): 337-340.
PUB
 
[2]
2001 | Zeitschriftenaufsatz | PUB-ID: 1616752
Microarray-based analysis of early development in Xenopus laevis
Altmann CR, Bell E, Sczyrba A, Pun J, Bekiranov S, Gaasterland T, Brivanlou AH (2001)
DEVELOPMENTAL BIOLOGY 236(1): 64-75.
PUB| DOI | WoS | PubMed | Europe PMC
 
[1]
2000 | Zeitschriftenaufsatz | PUB-ID: 1897767
MAGPIE/EGRET annotation of the 2.9-Mb Drosophila melanogaster Adh region
Gaasterland T, Sczyrba A, Thomas E, Kurban G (2000)
Genome Res 10(4): 502-510.
PUB
 

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[71]
2018 | Zeitschriftenaufsatz | PUB-ID: 2920777
Binning Enables Efficient Host Genome Reconstruction in Cnidarian Holobionts
Celis JS, Wibberg D, Ramírez-Portilla C, Rupp O, Sczyrba A, Winkler A, Kalinowski J, Wilke T (2018)
GigaScience 7(7): giy075.
PUB| DOI | WoS | PubMed | Europe PMC
 
[70]
2018 | Zeitschriftenaufsatz | PUB-ID: 2920723
AMBER: Assessment of Metagenome BinnERs
Meyer F, Hofmann P, Belmann P, Garrido-Oter R, Fritz A, Sczyrba A, McHardy AC (2018)
GigaScience: giy069.
PUB| DOI | WoS | PubMed | Europe PMC
 
[69]
2018 | Zeitschriftenaufsatz | PUB-ID: 2916929
Targeted in situ metatranscriptomics for selected taxa from mesophilic and thermophilic biogas plants
Stolze Y, Bremges A, Maus I, Pühler A, Sczyrba A, Schlüter A (2018)
Microbial Biotechnology 11(4): 667-679.
PUB| DOI | WoS | PubMed | Europe PMC
 
[68]
2018 | Zeitschriftenaufsatz | PUB-ID: 2920750
Characterization of Bathyarchaeota genomes assembled from metagenomes of biofilms residing in mesophilic and thermophilic biogas reactors
Maus I, Rumming M, Bergmann I, Heeg K, Pohl M, Nettmann E, Jaenicke S, Blom J, Pühler A, Schlüter A, Sczyrba A, et al. (2018)
Biotechnology for Biofuels 11: 167.
PUB| DOI | WoS | PubMed | Europe PMC
 
[67]
2018 | Zeitschriftenaufsatz | PUB-ID: 2915890
Analyzing large scale genomic data on the cloud with Sparkhit
Huang L, Krüger J, Sczyrba A (2018)
Bioinformatics 34(9): 1457-1465.
PUB| DOI | WoS | PubMed | Europe PMC
 
[66]
2018 | Zeitschriftenaufsatz | PUB-ID: 2918275
Insights into the fundamental physiology of the uncultured Fe-oxidizing bacterium Leptothrix ochracea
Fleming EJ, Woyke T, Donatello AR, Kuypers MMM, Sczyrba A, Littmann S, Emerson D (2018)
Applied and Environmental Microbiology 84(9): e02239-17.
PUB| DOI | WoS | PubMed | Europe PMC
 
[65]
2018 | Zeitschriftenaufsatz | PUB-ID: 2914959
Invasion ecology applied to inoculation of plant growth promoting bacteria through a novel SIMPER-PCA approach
da Schoren Costa P, Bolzan de Campos S, Albersmeier A, Dirksen P, Pereira Dresseno AL, Andrade Pais dos Santos OJ, Lima Milani KM, Etto RM, Battistus AG, Peres Rodrigues da Costa AC, Martinez de Oliveira AL, et al. (2018)
Plant and Soil 422(1-2): 467-478.
PUB| DOI | WoS
 
[64]
2017 | Zeitschriftenaufsatz | PUB-ID: 2915516
Genomics and prevalence of bacterial and archaeal isolates from biogas-producing microbiomes
Maus I, Bremges A, Stolze Y, Hahnke S, Cibis KG, Koeck DE, Kim YS, Kreubel J, Hassa J, Wibberg D, Weimann A, et al. (2017)
Biotechnology for Biofuels 10(1): 264.
PUB | PDF| DOI | WoS | PubMed | Europe PMC
 
[63]
2017 | Zeitschriftenaufsatz | PUB-ID: 2909153
Rapid protein alignment in the cloud: HAMOND combines fast DIAMOND alignments with Hadoop parallelism
Yu J, Blom J, Sczyrba A, Goesmann A (2017)
Journal of Biotechnology 257: 58-60.
PUB| DOI | WoS | PubMed | Europe PMC
 
[62]
2017 | Zeitschriftenaufsatz | PUB-ID: 2913556
Bioinformatics for NGS-based metagenomics and the application to biogas research
Jünemann S, Kleinbölting N, Jaenicke S, Henke C, Hassa J, Nelkner J, Stolze Y, Albaum S, Schlüter A, Goesmann A, Sczyrba A, et al. (2017)
Journal of Biotechnology 261(SI): 10-23.
PUB| DOI | Download (ext.) | WoS | PubMed | Europe PMC
 
[61]
2017 | Datenpublikation | PUB-ID: 2914921
Sparkhit evaluation data set
Huang L, Krüger J, Sczyrba A (2017) : Bielefeld University. doi:10.4119/unibi/2914921.
PUB | Dateien verfügbar| DOI
 
[60]
2017 | Zeitschriftenaufsatz | PUB-ID: 2914367
Critical Assessment of Metagenome Interpretation—a benchmark of metagenomics software
Sczyrba A, Hofmann P, Belmann P, Koslicki D, Janssen S, Dröge J, Gregor I, Majda S, Fiedler J, Dahms E, Bremges A, et al. (2017)
Nature Methods 14(11): 1063-1071.
PUB| DOI | WoS | PubMed | Europe PMC
 
[59]
2016 | Zeitschriftenaufsatz | PUB-ID: 2904815
Identification and genome reconstruction of abundant distinct taxa in microbiomes from one thermophilic and three mesophilic production-scale biogas plants
Stolze Y, Bremges A, Rumming M, Henkel C, Maus I, Pühler A, Sczyrba A, Schlüter A (2016)
Biotechnology for Biofuels 9: 156.
PUB | PDF| DOI | WoS | PubMed | Europe PMC
 
[58]
2016 | Zeitschriftenaufsatz | PUB-ID: 2907633
acdc – Automated Contamination Detection and Confidence estimation for single-cell genome data
Lux M, Krüger J, Rinke C, Maus I, Schlüter A, Woyke T, Sczyrba A, Hammer B (2016)
BMC Bioinformatics 17: 543.
PUB | PDF| DOI | WoS | PubMed | Europe PMC
 
[57]
2016 | Zeitschriftenaufsatz | PUB-ID: 2904836
Proteotyping of biogas plant microbiomes separates biogas plants according to process temperature and reactor type
Heyer R, Benndorf D, Kohrs F, De Vrieze J, Boon N, Hoffmann M, Rapp E, Schlüter A, Sczyrba A, Reichl U (2016)
Biotechnology for Biofuels 9(1): 155.
PUB| DOI | WoS | PubMed | Europe PMC
 
[56]
2016 | Zeitschriftenaufsatz | PUB-ID: 2903489
Genomic characterization of Defluviitoga tunisiensis L3, a key hydrolytic bacterium in a thermophilic biogas plant and its abundance as determined by metagenome fragment recruitment
Maus I, Cibis KG, Bremges A, Stolze Y, Wibberg D, Tomazetto G, Blom J, Sczyrba A, König H, Pühler A, Schlüter A (2016)
Journal of Biotechnology 232: 50-60.
PUB| DOI | WoS | PubMed | Europe PMC
 
[55]
2016 | Zeitschriftenaufsatz | PUB-ID: 2903302
Finished genome sequence and methylome of the cyanide-degrading Pseudomonas pseudoalcaligenes strain CECT5344 as resolved by single-molecule real-time sequencing
Wibberg D, Bremges A, Dammann-Kalinowski T, Maus I, Igeño MI, Vogelsang R, König C, Luque-Almagro VM, Roldán MD, Sczyrba A, Moreno-Vivián C, et al. (2016)
Journal of Biotechnology 232: 61-68.
PUB| DOI | WoS | PubMed | Europe PMC
 
[54]
2016 | Zeitschriftenaufsatz | PUB-ID: 2902190 PUB| DOI | WoS | PubMed | Europe PMC
 
[53]
2016 | Zeitschriftenaufsatz | PUB-ID: 2901418
Soil suppressiveness and its relations with the microbial community in a Brazilian subtropical agroecosystem under different management systems
Campos SB, Lisboa BB, Camargo FAO, Bayer C, Sczyrba A, Dirksen P, Albersmeier A, Kalinowski J, Beneduzi A, Costa PB, Passaglia LMP, et al. (2016)
Soil Biology and Biochemistry 96: 191-197.
PUB| DOI | WoS
 
[52]
2016 | Zeitschriftenaufsatz | PUB-ID: 2901729
MeCorS: Metagenome-enabled error correction of single cell sequencing reads
Bremges A, Singer E, Woyke T, Sczyrba A (2016)
Bioinformatics 32(14): 2199-2201.
PUB| DOI | WoS | PubMed | Europe PMC
 
[51]
2016 | Zeitschriftenaufsatz | PUB-ID: 2900928
Back to the future of soil metagenomics
Nesme J, Achouak W, Agathos S, Bailey M, Baldrian P, Brunel D, Frostegard A, Heulin T, Jansson JK, Jurkevitch E, Kowalchuk GA, et al. (2016)
Frontiers in Microbiology 7: 73.
PUB| DOI | WoS | PubMed | Europe PMC
 
[50]
2016 | Zeitschriftenaufsatz | PUB-ID: 2901675
Intraspecies transfer of the chromosomally encoded Acinetobacter baumannii blaNDM-1 carbapenemase gene.
Krahn T, Wibberg D, Maus I, Winkler A, Bontron S, Sczyrba A, Nordmann P, Pühler A, Poirel L, Schlüter A (2016)
Antimicrobial Agents and Chemotherapy 60(5): 3032-3040.
PUB| DOI | WoS | PubMed | Europe PMC
 
[49]
2016 | Zeitschriftenaufsatz | PUB-ID: 2905260
Unraveling the microbiome of a thermophilic biogas plant by metagenome and metatranscriptome analysis complemented by characterization of bacterial and archaeal isolates
Maus I, Koeck DE, Cibis KG, Hahnke S, Kim YS, Langer T, Kreubel J, Erhard M, Bremges A, Off S, Stolze Y, et al. (2016)
Biotechnology for Biofuels 9(1): 171.
PUB| DOI | WoS | PubMed | Europe PMC
 
[48]
2016 | Zeitschriftenaufsatz | PUB-ID: 2904234
An integrated metagenome and -proteome analysis of the microbial community residing in a biogas production plant
Ortseifen V, Stolze Y, Maus I, Sczyrba A, Bremges A, Albaum S, Jaenicke S, Fracowiak J, Pühler A, Schlüter A (2016)
Journal of Biotechnology 231: 268-279.
PUB| DOI | WoS | PubMed | Europe PMC
 
[47]
2015 | Zeitschriftenaufsatz | PUB-ID: 2762833
Fractionation of biogas plant sludge material improves metaproteomic characterization to investigate metabolic activity of microbial communities
Kohrs F, Wolter S, Benndorf D, Heyer R, Hoffmann M, Rapp E, Bremges A, Sczyrba A, Schlüter A, Reichl U (2015)
Proteomics 15(20): 3585-3589.
PUB| DOI | WoS | PubMed | Europe PMC
 
[46]
2015 | Zeitschriftenaufsatz | PUB-ID: 2764906
Deeply sequenced metagenome and metatranscriptome of a biogas-producing microbial community from an agricultural production-scale biogas plant
Bremges A, Maus I, Belmann P, Eikmeyer FG, Winkler A, Albersmeier A, Pühler A, Schlüter A, Sczyrba A (2015)
GigaScience 4(1): 33.
PUB | PDF| DOI | WoS | PubMed | Europe PMC
 
[45]
2015 | Zeitschriftenaufsatz | PUB-ID: 2726183
Genomic insights into the uncultivated marine Zetaproteobacteria at Loihi Seamount
Field EK, Sczyrba A, Lyman AE, Harris CC, Woyke T, Stepanauskas R, Emerson D (2015)
The ISME journal 9: 857-870.
PUB| DOI | WoS | PubMed | Europe PMC
 
[44]
2015 | Zeitschriftenaufsatz | PUB-ID: 2782501
Bioboxes: standardised containers for interchangeable bioinformatics software
Belmann P, Dröge J, Bremges A, McHardy AC, Sczyrba A, Barton MD (2015)
GigaScience 4: 47.
PUB| DOI | WoS | PubMed | Europe PMC
 
[43]
2015 | Konferenzbeitrag | PUB-ID: 2901612
Automatic discovery of metagenomic structure
Lux M, Sczyrba A, Hammer B (2015)
In: 2015 International Joint Conference on Neural Networks (IJCNN). Institute of Electrical & Electronics Engineers (IEEE).
PUB| DOI
 
[42]
2015 | Zeitschriftenaufsatz | PUB-ID: 2726156
Targeted diversity generation by intraterrestrial archaea and archaeal viruses
Paul BG, Bagby SC, Czornyj E, Arambula D, Handa S, Sczyrba A, Ghosh P, Miller JF, Valentine DL (2015)
Nature Communications 6: 6585.
PUB| DOI | WoS | PubMed | Europe PMC
 
[41]
2015 | Kurzbeitrag Konferenz | PUB-ID: 2901466
A Bioinformatics Pipeline for the Detection of β-lactamase Genes in Metagenome Sequence Data and its Application to Production-Scale Biogas Plants
Osterholz B, Wiebke P, Fust A, Rumming M, Schlüter A, Sczyrba A (2015)
Presented at the 3rd International Symposium on the environmental Dimension of Antibiotic Resistance, Wernigerode.
PUB
 
[40]
2015 | Report | PUB-ID: 2901613
Automated Contamination Detection in Single-Cell Sequencing
Lux M, Hammer B, Sczyrba A (2015)
Cold Spring Harbor Laboratory Press.
PUB| DOI
 
[39]
2014 | Zeitschriftenaufsatz | PUB-ID: 2685992
Temporal dynamics of fibrolytic and methanogenic rumen microorganisms during in situ incubation of switchgrass determined by 16S rRNA gene profiling
Piao H, Lachman M, Malfatti S, Sczyrba A, Knierim B, Auer M, Tringe SG, Mackie RI, Yeoman CJ, Hess M (2014)
Frontiers in Microbiology 5(307).
PUB| DOI | Download (ext.) | WoS | PubMed | Europe PMC
 
[38]
2014 | Zeitschriftenaufsatz | PUB-ID: 2654433
The Candidate Phylum Poribacteria by Single-Cell Genomics: New Insights into Phylogeny, Cell-Compartmentation, Eukaryote-Like Repeat Proteins, and Other Genomic Features
Kamke J, Rinke C, Schwientek P, Mavromatis K, Ivanova N, Sczyrba A, Woyke T, Hentschel U (2014)
PLoS ONE 9(1): e87353.
PUB| DOI | WoS | PubMed | Europe PMC
 
[37]
2014 | Zeitschriftenaufsatz | PUB-ID: 2689051
Comparative single-cell genomics reveals potential ecological niches for the freshwater acI Actinobacteria lineage
Ghylin TW, Garcia SL, Moya F, Oyserman BO, Schwientek P, Forest KT, Mutschler J, Dwulit-Smith J, Chan L-K, Martinez-Garcia M, Sczyrba A, et al. (2014)
The ISME Journal 8(12): 2503-2516.
PUB| DOI | WoS | PubMed | Europe PMC
 
[36]
2014 | Zeitschriftenaufsatz | PUB-ID: 2698163
Phylogenomically Guided Identification of Industrially Relevant GH1 β-Glucosidases through DNA Synthesis and Nanostructure-Initiator Mass Spectrometry
Heins RA, Cheng X, Nath S, Deng K, Bowen BP, Chivian DC, Datta S, Friedland GD, D'Haeseleer P, Wu D, Tran-Gyamfi M, et al. (2014)
ACS chemical biology 9(9): 2082-2091.
PUB| DOI | WoS | PubMed | Europe PMC
 
[35]
2014 | Zeitschriftenaufsatz | PUB-ID: 2672695
Genomic and metabolic diversity of marine group I thaumarchaeota in the mesopelagic of two subtropical gyres
Swan BK, Chaffin MD, Martinez-Garcia M, Morrison HG, Field EK, Poulton NJ, Masland EDP, Harris CC, Sczyrba A, Chain PSG, Koren S, et al. (2014)
PloS one 9(4): 95380.
PUB| DOI | WoS | PubMed | Europe PMC
 
[34]
2014 | Zeitschriftenaufsatz | PUB-ID: 2665333
Mycoplasma salivarium as a Dominant Coloniser of Fanconi Anaemia Associated Oral Carcinoma
Henrich B, Rumming M, Sczyrba A, Velleuer E, Dietrich R, Gerlach W, Gombert M, Rahn S, Stoye J, Borkhardt A, Fischer U (2014)
PLoS ONE 9(3): e92297.
PUB| DOI | WoS | PubMed | Europe PMC
 
[33]
2014 | Zeitschriftenaufsatz | PUB-ID: 2662055
Complete genome sequence of the cyanide-degrading bacterium Pseudomonas pseudoalcaligenes CECT5344
Wibberg D, Luque-Almagro VM, Igeño MI, Bremges A, Roldán MD, Merchán F, Sáez LP, Guijo MI, Manso MI, Macías D, Cabello P, et al. (2014)
Journal of biotechnology 175: 67-68.
PUB| DOI | WoS | PubMed | Europe PMC
 
[32]
2013 | Konferenzbeitrag | PUB-ID: 2909357
Nonlinear dimensionality reduction for cluster identification in metagenomic samples
Gisbrecht A, Hammer B, Mokbel B, Sczyrba A (2013)
In: IV. 174-179.
PUB
 
[31]
2013 | Konferenzbeitrag | PUB-ID: 2623500
Nonlinear dimensionality reduction for cluster identification in metagenomic samples
Gisbrecht A, Hammer B, Mokbel B, Sczyrba A (2013)
In: 17th International Conference on Information Visualisation IV 2013. Banissi E (Ed); 174-179.
PUB
 
[30]
2013 | Zeitschriftenaufsatz | PUB-ID: 2613567
Insights into the phylogeny and coding potential of microbial dark matter
Rinke C, Schwientek P, Sczyrba A, Ivanova NN, Anderson IJ, Cheng J-F, Darling A, Malfatti S, Swan BK, Gies EA, Dodsworth JA, et al. (2013)
Nature 499(7459): 431-437.
PUB| DOI | WoS | PubMed | Europe PMC
 
[29]
2013 | Zeitschriftenaufsatz | PUB-ID: 2563424
UGA is an additional glycine codon in uncultured SR1 bacteria from the human microbiota
Campbell JH, O'Donoghue P, Campbell AG, Schwientek P, Sczyrba A, Woyke T, Söll D, Podar M (2013)
Proceedings of the National Academy of Sciences of the United States of America 110(14): 5540-5545.
PUB| DOI | WoS | PubMed | Europe PMC
 
[28]
2013 | Zeitschriftenaufsatz | PUB-ID: 2638234
Single-cell genomics reveal low recombination frequencies in freshwater bacteria of the SAR11 clade
Zaremba-Niedzwiedzka K, Viklund J, Zhao W, Ast J, Sczyrba A, Woyke T, McMahon K, Bertilsson S, Stepanauskas R, Andersson SG (2013)
Genome biology 14(11): R130.
PUB| DOI | WoS | PubMed | Europe PMC
 
[27]
2013 | Zeitschriftenaufsatz | PUB-ID: 2641352
Single-cell genomics reveals complex carbohydrate degradation patterns in poribacterial symbionts of marine sponges
Kamke J, Sczyrba A, Ivanova N, Schwientek P, Rinke C, Mavromatis K, Woyke T, Hentschel U (2013)
The ISME journal 7(12): 2287-2300.
PUB| DOI | WoS | PubMed | Europe PMC
 
[26]
2013 | Zeitschriftenaufsatz | PUB-ID: 2563543
Multiple Single-Cell Genomes Provide Insight into Functions of Uncultured Deltaproteobacteria in the Human Oral Cavity
Campbell AG, Campbell JH, Schwientek P, Woyke T, Sczyrba A, Allman S, Beall CJ, Griffen A, Leys E, Podar M (2013)
PLoS ONE 8(3): e59361.
PUB| DOI | WoS | PubMed | Europe PMC
 
[25]
2013 | Zeitschriftenaufsatz | PUB-ID: 2613623
Prevalent genome streamlining and latitudinal divergence of planktonic bacteria in the surface ocean
Swan BK, Tupper B, Sczyrba A, Lauro FM, Martinez-Garcia M, González JM, Luo H, Wright JJ, Landry ZC, Hanson NW, Thompson BP, et al. (2013)
Proceedings of the National Academy of Sciences of the United States of America 110(28): 11463-11468.
PUB| DOI | WoS | PubMed | Europe PMC
 
[24]
2012 | Zeitschriftenaufsatz | PUB-ID: 2518330
Metabolic potential of a single cell belonging to one of the most abundant lineages in freshwater bacterioplankton
Garcia SL, McMahon KD, Martinez-Garcia M, Srivastava A, Sczyrba A, Stepanauskas R, Grossart H-P, Woyke T, Warnecke F (2012)
The ISME journal 7(1): 137-147.
PUB| DOI | WoS | PubMed | Europe PMC
 
[23]
2012 | Zeitschriftenaufsatz | PUB-ID: 2547307
Personalized cloud-based bioinformatics services for research and education: use cases and the elasticHPC package
El-Kalioby M, Abouelhoda M, Krüger J, Giegerich R, Sczyrba A, Wall DP, Tonellato P (2012)
BMC Bioinformatics 13(Suppl 17): S22.
PUB| DOI | WoS | PubMed | Europe PMC
 
[22]
2011 | Zeitschriftenaufsatz | PUB-ID: 2329885
Potential for Chemolithoautotrophy Among Ubiquitous Bacteria Lineages in the Dark Ocean
Swan BK, Martinez-Garcia M, Preston CM, Sczyrba A, Woyke T, Lamy D, Reinthaler T, Poulton NJ, Masland EDP, Gomez ML, Sieracki ME, et al. (2011)
Science 333(6047): 1296-1300.
PUB| DOI | WoS | PubMed | Europe PMC
 
[21]
2011 | Zeitschriftenaufsatz | PUB-ID: 2351462
High-Throughput In Vitro Glycoside Hydrolase (HIGH) Screening for Enzyme Discovery
Kim T-W, Chokhawala HA, Hess M, Dana CM, Baer Z, Sczyrba A, Rubin EM, Blanch HW, Clark DS (2011)
Angewandte Chemie 123(47): 11411-11414.
PUB| DOI | PubMed | Europe PMC
 
[20]
2011 | Zeitschriftenaufsatz | PUB-ID: 2789582
Genome sequence of the 1,4-dioxane-degrading Pseudonocardia dioxanivorans strain CB1190
Sales CM, Mahendra S, Grostern A, Parales RE, Goodwin LA, Woyke T, Nolan M, Lapidus A, Chertkov O, Ovchinnikova G, Sczyrba A, et al. (2011)
Journal of Bacteriology 193(17): 4549-4550.
PUB| DOI | Download (ext.) | WoS | PubMed | Europe PMC | GenBank
 
[19]
2011 | Zeitschriftenaufsatz | PUB-ID: 2410148
Decontamination of MDA Reagents for Single Cell Whole Genome Amplification
Woyke T, Sczyrba A, Lee J, Rinke C, Tighe D, Clingenpeel S, Malmstrom R, Stepanauskas R, Cheng J-F (2011)
PLoS ONE 6(10): e26161.
PUB| DOI | WoS | PubMed | Europe PMC
 
[18]
2011 | Zeitschriftenaufsatz | PUB-ID: 1991643
Metagenomic discovery of biomass-degrading genes and genomes from cow rumen
Hess M, Sczyrba A, Egan R, Kim TW, Chokhawala H, Schroth G, Luo S, Clark DS, Chen F, Zhang T, Mackie RI, et al. (2011)
Science 331(6016): 463-467.
PUB| DOI | WoS | PubMed | Europe PMC
 
[17]
2010 | Zeitschriftenaufsatz | PUB-ID: 1991615
Meeting report: the terabase metagenomics workshop and the vision of an Earth microbiome project
Gilbert JA, Meyer F, Antonopoulos D, Balaji P, Brown CT, Desai N, Eisen JA, Evers D, Field D, Feng W, Huson D, et al. (2010)
Stand Genomic Sci 3(3): 243-248.
PUB| DOI | PubMed | Europe PMC
 
[16]
2008 | Zeitschriftenaufsatz | PUB-ID: 1784020
GeneFisher-P: variations of GeneFisher as processes in Bio-jETI
Lamprecht A-L, Margaria T, Steffen B, Sczyrba A, Hartmeier S, Giegerich R (2008)
BMC Bioinformatics 9(Suppl 4): S13.
PUB | PDF| DOI | WoS | PubMed | Europe PMC
 
[15]
2008 | Zeitschriftenaufsatz | PUB-ID: 1588303
Two interactive bioinformatics courses at the bielefeld university bioinformatics server
Sczyrba A, Konermann S, Giegerich R (2008)
BRIEFINGS IN BIOINFORMATICS 9(3): 243-249.
PUB| DOI | WoS | PubMed | Europe PMC
 
[14]
2006 | Zeitschriftenaufsatz | PUB-ID: 1599756
IsoSVM - Distinguishing isoforms and paralogs on the protein level
Spitzer M, Lorkowski S, Cullen P, Sczyrba A, Fuellen G (2006)
BMC Bioinformatics 7(1): 110.
PUB | PDF| DOI | WoS | PubMed | Europe PMC
 
[13]
2005 | Zeitschriftenaufsatz | PUB-ID: 1773613
XenDB: Full length cDNA prediction and cross species mapping in Xenopus laevis
Sczyrba A, Beckstette M, Brivanlou AH, Giegerich R, Altmann CR (2005)
BMC Genomics 6(1): 123.
PUB | PDF| DOI | WoS | PubMed | Europe PMC
 
[12]
2004 | Zeitschriftenaufsatz | PUB-ID: 2383529
Genlight: Interactive high-throughput sequence analysis and comparative genomics
Beckstette M, Mailänder JT, Marhöfer RJ, Sczyrba A, Ohlebusch E, Giegerich R, Selzer PM (2004)
Journal of Integrative Bioinformatics 1(1): 0008.
PUB| DOI
 
[11]
2004 | Konferenzbeitrag | PUB-ID: 2383536
Genlight: Interactive high-throughput sequence analysis and comparative genomics
Beckstette M, Sczyrba A, Selzer PM (2004)
In: Proceedings of the German Conference on Bioinformatics. Lecture Notes in Informatics: GI: 179-186.
PUB
 
[10]
2004 | Konferenzbeitrag | PUB-ID: 2383561
Identification of 10,500 Xenopus laevis Full Length Clones through EST Clustering and Sequence Analysis
Sczyrba A, Beckstette M, Giegerich R, Altman C (2004)
In: Proceedings of the German Conference on Bioinformatics. Lecture Notes in Informatics: GI.
PUB
 
[9]
2004 | Zeitschriftenaufsatz | PUB-ID: 1607400
AGenDA: gene prediction by cross-species sequence comparison
Taher L, Rinner O, Garg S, Sczyrba A, Morgenstern B (2004)
Nucleic Acids Research 32(Web Server): W305-W308.
PUB | PDF| DOI | WoS | PubMed | Europe PMC
 
[8]
2004 | Zeitschriftenaufsatz | PUB-ID: 1607394
e2g: an interactive web-based server for efficiently mapping large EST and cDNA sets to genomic sequences
Krüger J, Sczyrba A, Kurtz S, Giegerich R (2004)
NUCLEIC ACIDS RESEARCH 32(Web Server): W301-W304.
PUB | PDF| DOI | WoS | PubMed | Europe PMC
 
[7]
2003 | Zeitschriftenaufsatz | PUB-ID: 1609260
EMMA: a platform for consistent storage and efficient analysis of microarray data
Dondrup M, Goesmann A, Bartels D, Kalinowski J, Krause L, Linke B, Rupp O, Sczyrba A, Pühler A, Meyer F (2003)
JOURNAL OF BIOTECHNOLOGY 106(2-3): 135-146.
PUB| DOI | WoS | PubMed | Europe PMC
 
[6]
2003 | Zeitschriftenaufsatz | PUB-ID: 1612470
AltAVisT: Comparing alternative multiple sequence alignments
Morgenstern B, Goel S, Sczyrba A, Dress A (2003)
BIOINFORMATICS 19(3): 425-426.
PUB| DOI | WoS | PubMed | Europe PMC
 
[5]
2003 | Zeitschriftenaufsatz | PUB-ID: 1773844
RNA-related tools on the Bielefeld Bioinformatics Server
Sczyrba A, Krüger J, Mersch H, Kurtz S, Giegerich R (2003)
Nucleic Acids Research 31(13): 3767-3770.
PUB | Dateien verfügbar| DOI | WoS | PubMed | Europe PMC
 
[4]
2003 | Zeitschriftenaufsatz | PUB-ID: 1610494
AGenDA: homology-based gene prediction
Taher L, Rinner O, Garg S, Sczyrba A, Brudno M, Batzoglou S, Morgenstern B (2003)
BIOINFORMATICS 19(12): 1575-1577.
PUB| DOI | WoS | PubMed | Europe PMC
 
[3]
2001 | Zeitschriftenaufsatz | PUB-ID: 1897716
Homology-based annotation yields 1,042 new candidate genes in the Drosophila melanogaster genome
Gopal S, Schroeder M, Pieper U, Sczyrba A, Aytekin-Kurban G, Bekiranov S, Fajardo JE, Eswar N, Sanchez R, Sali A, Gaasterland T (2001)
Nat Genet 27(3): 337-340.
PUB
 
[2]
2001 | Zeitschriftenaufsatz | PUB-ID: 1616752
Microarray-based analysis of early development in Xenopus laevis
Altmann CR, Bell E, Sczyrba A, Pun J, Bekiranov S, Gaasterland T, Brivanlou AH (2001)
DEVELOPMENTAL BIOLOGY 236(1): 64-75.
PUB| DOI | WoS | PubMed | Europe PMC
 
[1]
2000 | Zeitschriftenaufsatz | PUB-ID: 1897767
MAGPIE/EGRET annotation of the 2.9-Mb Drosophila melanogaster Adh region
Gaasterland T, Sczyrba A, Thomas E, Kurban G (2000)
Genome Res 10(4): 502-510.
PUB
 

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