Metagenomic discovery of biomass-degrading genes and genomes from cow rumen

Hess M, Sczyrba A, Egan R, Kim TW, Chokhawala H, Schroth G, Luo S, Clark DS, Chen F, Zhang T, Mackie RI, et al. (2011)
Science 331(6016): 463-467.

Zeitschriftenaufsatz | Veröffentlicht | Englisch
 
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Abstract / Bemerkung
The paucity of enzymes that efficiently deconstruct plant polysaccharides represents a major bottleneck for industrial-scale conversion of cellulosic biomass into biofuels. Cow rumen microbes specialize in degradation of cellulosic plant material, but most members of this complex community resist cultivation. To characterize biomass-degrading genes and genomes, we sequenced and analyzed 268 gigabases of metagenomic DNA from microbes adherent to plant fiber incubated in cow rumen. From these data, we identified 27,755 putative carbohydrate-active genes and expressed 90 candidate proteins, of which 57% were enzymatically active against cellulosic substrates. We also assembled 15 uncultured microbial genomes, which were validated by complementary methods including single-cell genome sequencing. These data sets provide a substantially expanded catalog of genes and genomes participating in the deconstruction of cellulosic biomass.
Stichworte
4-beta-Cellobiosidase/genetics/metabolism; Cellulose 1; Cellulose/*metabolism; Cellulases/chemistry/*genetics/metabolism; Cellulase/genetics/metabolism; Carbohydrate Metabolism; Cattle/*microbiology; Bacterial Proteins/chemistry/genetics/metabolism; *Biomass; Bacteria/enzymology/*genetics/isolation & purification/metabolism; Animals; Amino Acid Sequence; Bacterial; Genome; *Metagenome; Molecular Sequence Annotation; Metagenomics/methods; Molecular Sequence Data; Poaceae/microbiology; Bacterial; Genes; Rumen/metabolism/*microbiology; Sequence Analysis; DNA
Erscheinungsjahr
2011
Zeitschriftentitel
Science
Band
331
Ausgabe
6016
Seite(n)
463-467
ISSN
0036-8075
eISSN
1095-9203
Page URI
https://pub.uni-bielefeld.de/record/1991643

Zitieren

Hess M, Sczyrba A, Egan R, et al. Metagenomic discovery of biomass-degrading genes and genomes from cow rumen. Science. 2011;331(6016):463-467.
Hess, M., Sczyrba, A., Egan, R., Kim, T. W., Chokhawala, H., Schroth, G., Luo, S., et al. (2011). Metagenomic discovery of biomass-degrading genes and genomes from cow rumen. Science, 331(6016), 463-467. doi:10.1126/science.1200387
Hess, M., Sczyrba, A., Egan, R., Kim, T. W., Chokhawala, H., Schroth, G., Luo, S., Clark, D. S., Chen, F., Zhang, T., et al. (2011). Metagenomic discovery of biomass-degrading genes and genomes from cow rumen. Science 331, 463-467.
Hess, M., et al., 2011. Metagenomic discovery of biomass-degrading genes and genomes from cow rumen. Science, 331(6016), p 463-467.
M. Hess, et al., “Metagenomic discovery of biomass-degrading genes and genomes from cow rumen”, Science, vol. 331, 2011, pp. 463-467.
Hess, M., Sczyrba, A., Egan, R., Kim, T.W., Chokhawala, H., Schroth, G., Luo, S., Clark, D.S., Chen, F., Zhang, T., Mackie, R.I., Pennacchio, L.A., Tringe, S.G., Visel, A., Woyke, T., Wang, Z., Rubin, E.M.: Metagenomic discovery of biomass-degrading genes and genomes from cow rumen. Science. 331, 463-467 (2011).
Hess, M., Sczyrba, Alexander, Egan, R., Kim, T. W., Chokhawala, H., Schroth, G., Luo, S., Clark, D. S., Chen, F., Zhang, T., Mackie, R. I., Pennacchio, L. A., Tringe, S. G., Visel, A., Woyke, T., Wang, Z., and Rubin, E. M. “Metagenomic discovery of biomass-degrading genes and genomes from cow rumen”. Science 331.6016 (2011): 463-467.

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