Rapid protein alignment in the cloud: HAMOND combines fast DIAMOND alignments with Hadoop parallelism

Yu J, Blom J, Sczyrba A, Goesmann A (2017)
Journal of Biotechnology 257: 58-60.

Zeitschriftenaufsatz | Veröffentlicht | Englisch
 
Download
OA 2.12 MB
DOI
URN
urn:nbn:de:0070-pub-29091538
Autor*in
Yu, JiaUniBi; Blom, JochenUniBi; Sczyrba, AlexanderUniBi ; Goesmann, Alexander
Einrichtung
Centrum für Biotechnologie > Arbeitsgruppe A. Sczyrba
Technische Fakultät > Computational Metagenomics
Technische Fakultät > Int. Graduiertenkolleg DiDy (GRK 1906)
Erscheinungsjahr
2017
Zeitschriftentitel
Journal of Biotechnology
Band
257
Seite(n)
58-60
Urheberrecht / Lizenzen
Creative Commons Namensnennung - Nicht kommerziell - Keine Bearbeitungen 4.0 International (CC BY-NC-ND 4.0)
ISSN
0168-1656, 1873-4863
Page URI
https://pub.uni-bielefeld.de/record/2909153

Zitieren

Yu J, Blom J, Sczyrba A, Goesmann A. Rapid protein alignment in the cloud: HAMOND combines fast DIAMOND alignments with Hadoop parallelism. Journal of Biotechnology. 2017;257:58-60.
Yu, J., Blom, J., Sczyrba, A., & Goesmann, A. (2017). Rapid protein alignment in the cloud: HAMOND combines fast DIAMOND alignments with Hadoop parallelism. Journal of Biotechnology, 257, 58-60. https://doi.org/10.1016/j.jbiotec.2017.02.020
Yu, Jia, Blom, Jochen, Sczyrba, Alexander, and Goesmann, Alexander. 2017. “Rapid protein alignment in the cloud: HAMOND combines fast DIAMOND alignments with Hadoop parallelism”. Journal of Biotechnology 257: 58-60.
Yu, J., Blom, J., Sczyrba, A., and Goesmann, A. (2017). Rapid protein alignment in the cloud: HAMOND combines fast DIAMOND alignments with Hadoop parallelism. Journal of Biotechnology 257, 58-60.
Yu, J., et al., 2017. Rapid protein alignment in the cloud: HAMOND combines fast DIAMOND alignments with Hadoop parallelism. Journal of Biotechnology, 257, p 58-60.
J. Yu, et al., “Rapid protein alignment in the cloud: HAMOND combines fast DIAMOND alignments with Hadoop parallelism”, Journal of Biotechnology, vol. 257, 2017, pp. 58-60.
Yu, J., Blom, J., Sczyrba, A., Goesmann, A.: Rapid protein alignment in the cloud: HAMOND combines fast DIAMOND alignments with Hadoop parallelism. Journal of Biotechnology. 257, 58-60 (2017).
Yu, Jia, Blom, Jochen, Sczyrba, Alexander, and Goesmann, Alexander. “Rapid protein alignment in the cloud: HAMOND combines fast DIAMOND alignments with Hadoop parallelism”. Journal of Biotechnology 257 (2017): 58-60.
Alle Dateien verfügbar unter der/den folgenden Lizenz(en):
Creative Commons Namensnennung - Nicht kommerziell - Keine Bearbeitungen 4.0 International (CC BY-NC-ND 4.0):
cc_by_nc_nd_4_0
https://creativecommons.org/licenses/by-nc-nd/4.0/deed.de
https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode.de
Volltext(e)
Name
2.12 MB
Access Level
OA Open Access
Zuletzt Hochgeladen
2021-06-25T07:14:21Z
MD5 Prüfsumme
0e00ce431a8e1578653c97529790f7f6


1 Zitation in Europe PMC

Daten bereitgestellt von Europe PubMed Central.

Comparison of methods for library construction and short read annotation of shellfish viral metagenomes.
Wei HY, Huang S, Wang JY, Gao F, Jiang JZ., Genes Genomics 40(3), 2018
PMID: 29892802

10 References

Daten bereitgestellt von Europe PubMed Central.

Basic local alignment search tool.
Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ., J. Mol. Biol. 215(3), 1990
PMID: 2231712

Amies, 2012
EDGAR 2.0: an enhanced software platform for comparative gene content analyses.
Blom J, Kreis J, Spanig S, Juhre T, Bertelli C, Ernst C, Goesmann A., Nucleic Acids Res. 44(W1), 2016
PMID: 27098043
Fast and sensitive protein alignment using DIAMOND.
Buchfink B, Xie C, Huson DH., Nat. Methods 12(1), 2014
PMID: 25402007

AUTHOR UNKNOWN, 0
HBLAST: Parallelised sequence similarity--A Hadoop MapReducable basic local alignment search tool.
O'Driscoll A, Belogrudov V, Carroll J, Kropp K, Walsh P, Ghazal P, Sleator RD., J Biomed Inform 54(), 2015
PMID: 25625550

Schatz, 2008
GHOSTX: an improved sequence homology search algorithm using a query suffix array and a database suffix array.
Suzuki S, Kakuta M, Ishida T, Akiyama Y., PLoS ONE 9(8), 2014
PMID: 25099887
MapReduce
White, 2015
RAPSearch2: a fast and memory-efficient protein similarity search tool for next-generation sequencing data.
Zhao Y, Tang H, Ye Y., Bioinformatics 28(1), 2011
PMID: 22039206
Export

Markieren/ Markierung löschen
Markierte Publikationen

Open Data PUB

Web of Science

Dieser Datensatz im Web of Science®
Quellen

PMID: 28232083
PubMed | Europe PMC

Suchen in

Google Scholar