Potential for Chemolithoautotrophy Among Ubiquitous Bacteria Lineages in the Dark Ocean
Swan BK, Martinez-Garcia M, Preston CM, Sczyrba A, Woyke T, Lamy D, Reinthaler T, Poulton NJ, Masland EDP, Gomez ML, Sieracki ME, et al. (2011)
Science 333(6047): 1296-1300.
Zeitschriftenaufsatz
| Veröffentlicht | Englisch
Download
Es wurden keine Dateien hochgeladen. Nur Publikationsnachweis!
Autor*in
Swan, Brandon K.;
Martinez-Garcia, Manuel;
Preston, Christina M.;
Sczyrba, AlexanderUniBi ;
Woyke, Tanja;
Lamy, Dominique;
Reinthaler, Thomas;
Poulton, Nicole J.;
Masland, E. Dashiell P.;
Gomez, Monica Lluesma;
Sieracki, Michael E.;
DeLong, Edward F.
Alle
Alle
Einrichtung
Erscheinungsjahr
2011
Zeitschriftentitel
Science
Band
333
Ausgabe
6047
Seite(n)
1296-1300
ISSN
0036-8075
eISSN
1095-9203
Page URI
https://pub.uni-bielefeld.de/record/2329885
Zitieren
Swan BK, Martinez-Garcia M, Preston CM, et al. Potential for Chemolithoautotrophy Among Ubiquitous Bacteria Lineages in the Dark Ocean. Science. 2011;333(6047):1296-1300.
Swan, B. K., Martinez-Garcia, M., Preston, C. M., Sczyrba, A., Woyke, T., Lamy, D., Reinthaler, T., et al. (2011). Potential for Chemolithoautotrophy Among Ubiquitous Bacteria Lineages in the Dark Ocean. Science, 333(6047), 1296-1300. https://doi.org/10.1126/science.1203690
Swan, Brandon K., Martinez-Garcia, Manuel, Preston, Christina M., Sczyrba, Alexander, Woyke, Tanja, Lamy, Dominique, Reinthaler, Thomas, et al. 2011. “Potential for Chemolithoautotrophy Among Ubiquitous Bacteria Lineages in the Dark Ocean”. Science 333 (6047): 1296-1300.
Swan, B. K., Martinez-Garcia, M., Preston, C. M., Sczyrba, A., Woyke, T., Lamy, D., Reinthaler, T., Poulton, N. J., Masland, E. D. P., Gomez, M. L., et al. (2011). Potential for Chemolithoautotrophy Among Ubiquitous Bacteria Lineages in the Dark Ocean. Science 333, 1296-1300.
Swan, B.K., et al., 2011. Potential for Chemolithoautotrophy Among Ubiquitous Bacteria Lineages in the Dark Ocean. Science, 333(6047), p 1296-1300.
B.K. Swan, et al., “Potential for Chemolithoautotrophy Among Ubiquitous Bacteria Lineages in the Dark Ocean”, Science, vol. 333, 2011, pp. 1296-1300.
Swan, B.K., Martinez-Garcia, M., Preston, C.M., Sczyrba, A., Woyke, T., Lamy, D., Reinthaler, T., Poulton, N.J., Masland, E.D.P., Gomez, M.L., Sieracki, M.E., DeLong, E.F., Herndl, G.J., Stepanauskas, R.: Potential for Chemolithoautotrophy Among Ubiquitous Bacteria Lineages in the Dark Ocean. Science. 333, 1296-1300 (2011).
Swan, Brandon K., Martinez-Garcia, Manuel, Preston, Christina M., Sczyrba, Alexander, Woyke, Tanja, Lamy, Dominique, Reinthaler, Thomas, Poulton, Nicole J., Masland, E. Dashiell P., Gomez, Monica Lluesma, Sieracki, Michael E., DeLong, Edward F., Herndl, Gerhard J., and Stepanauskas, Ramunas. “Potential for Chemolithoautotrophy Among Ubiquitous Bacteria Lineages in the Dark Ocean”. Science 333.6047 (2011): 1296-1300.
Daten bereitgestellt von European Bioinformatics Institute (EBI)
UNIPROT
79 Einträge gefunden, die diesen Artikel zitieren von denen 10 angezeigt werden
Ribulose-1,5-bisphosphate carboxylase/oxygenase form II (UNIPROT: F5B900)
Organism: Gammaproteobacteria bacterium SCGC AAA003-E02
Download in FASTA format
Organism: Gammaproteobacteria bacterium SCGC AAA003-E02
Download in FASTA format
Ribulose-1,5-bisphosphate carboxylase/oxygenase form I (UNIPROT: F5B8Z8)
Organism: delta proteobacterium SCGC AAA288-C06
Download in FASTA format
Organism: delta proteobacterium SCGC AAA288-C06
Download in FASTA format
Ribulose-1,5-bisphosphate carboxylase/oxygenase form II (UNIPROT: F5B908)
Organism: gamma proteobacterium SCGC AAA240-K14
Download in FASTA format
Organism: gamma proteobacterium SCGC AAA240-K14
Download in FASTA format
Adenosine-5'-phosphosulfate reductase alpha subunit (UNIPROT: F5B944)
Organism: gamma proteobacterium SCGC AAA288-G15
Download in FASTA format
Organism: gamma proteobacterium SCGC AAA288-G15
Download in FASTA format
Adenosine-5'-phosphosulfate reductase alpha subunit (UNIPROT: F5B924)
Organism: gamma proteobacterium SCGC AAA007-N18
Download in FASTA format
Organism: gamma proteobacterium SCGC AAA007-N18
Download in FASTA format
Adenosine-5'-phosphosulfate reductase alpha subunit (UNIPROT: F5B939)
Organism: delta proteobacterium SCGC AAA240-J23
Download in FASTA format
Organism: delta proteobacterium SCGC AAA240-J23
Download in FASTA format
Adenosine-5'-phosphosulfate reductase alpha subunit (UNIPROT: F5B945)
Organism: gamma proteobacterium SCGC AAA288-G17
Download in FASTA format
Organism: gamma proteobacterium SCGC AAA288-G17
Download in FASTA format
Adenosine-5'-phosphosulfate reductase alpha subunit (UNIPROT: F5B947)
Organism: gamma proteobacterium SCGC AAA288-N11
Download in FASTA format
Organism: gamma proteobacterium SCGC AAA288-N11
Download in FASTA format
Ribulose-1,5-bisphosphate carboxylase/oxygenase form II (UNIPROT: F5B903)
Organism: gamma proteobacterium SCGC AAA008-C17
Download in FASTA format
Organism: gamma proteobacterium SCGC AAA008-C17
Download in FASTA format
Ribulose-1,5-bisphosphate carboxylase/oxygenase form II (UNIPROT: F5B914)
Organism: gamma proteobacterium SCGC AAA288-F13
Download in FASTA format
Organism: gamma proteobacterium SCGC AAA288-F13
Download in FASTA format
EMBL
210 Zitationen in Europe PMC
Daten bereitgestellt von Europe PubMed Central.
Periodic and Spatial Spreading of Alkanes and Alcanivorax Bacteria in Deep Waters of the Mariana Trench.
Li WL, Huang JM, Zhang PW, Cui GJ, Wei ZF, Wu YZ, Gao ZM, Han Z, Wang Y., Appl Environ Microbiol 85(3), 2019
PMID: 30446553
Li WL, Huang JM, Zhang PW, Cui GJ, Wei ZF, Wu YZ, Gao ZM, Han Z, Wang Y., Appl Environ Microbiol 85(3), 2019
PMID: 30446553
Complete Genome Sequence of "Candidatus Thioglobus sp." Strain NP1, an Open-Ocean Isolate from the SUP05 Clade of Marine Gammaproteobacteria.
Spietz RL, Marshall KT, Zhao X, Morris RM., Microbiol Resour Announc 8(11), 2019
PMID: 30938321
Spietz RL, Marshall KT, Zhao X, Morris RM., Microbiol Resour Announc 8(11), 2019
PMID: 30938321
High Growth Potential of Long-Term Starved Deep Ocean Opportunistic Heterotrophic Bacteria.
Sebastián M, Estrany M, Ruiz-González C, Forn I, Sala MM, Gasol JM, Marrasé C., Front Microbiol 10(), 2019
PMID: 31024513
Sebastián M, Estrany M, Ruiz-González C, Forn I, Sala MM, Gasol JM, Marrasé C., Front Microbiol 10(), 2019
PMID: 31024513
Single cell genomics yields a wide diversity of small planktonic protists across major ocean ecosystems.
Sieracki ME, Poulton NJ, Jaillon O, Wincker P, de Vargas C, Rubinat-Ripoll L, Stepanauskas R, Logares R, Massana R., Sci Rep 9(1), 2019
PMID: 30988337
Sieracki ME, Poulton NJ, Jaillon O, Wincker P, de Vargas C, Rubinat-Ripoll L, Stepanauskas R, Logares R, Massana R., Sci Rep 9(1), 2019
PMID: 30988337
Morphological Plasticity in a Sulfur-Oxidizing Marine Bacterium from the SUP05 Clade Enhances Dark Carbon Fixation.
Shah V, Zhao X, Lundeen RA, Ingalls AE, Nicastro D, Morris RM., MBio 10(3), 2019
PMID: 31064824
Shah V, Zhao X, Lundeen RA, Ingalls AE, Nicastro D, Morris RM., MBio 10(3), 2019
PMID: 31064824
Evidence for H2 consumption by uncultured Desulfobacterales in coastal sediments.
Dyksma S, Pjevac P, Ovanesov K, Mussmann M., Environ Microbiol 20(2), 2018
PMID: 28772023
Dyksma S, Pjevac P, Ovanesov K, Mussmann M., Environ Microbiol 20(2), 2018
PMID: 28772023
The enigmatic SAR202 cluster up close: shedding light on a globally distributed dark ocean lineage involved in sulfur cycling.
Mehrshad M, Rodriguez-Valera F, Amoozegar MA, López-García P, Ghai R., ISME J 12(3), 2018
PMID: 29208946
Mehrshad M, Rodriguez-Valera F, Amoozegar MA, López-García P, Ghai R., ISME J 12(3), 2018
PMID: 29208946
High dark inorganic carbon fixation rates by specific microbial groups in the Atlantic off the Galician coast (NW Iberian margin).
Guerrero-Feijóo E, Sintes E, Herndl GJ, Varela MM., Environ Microbiol 20(2), 2018
PMID: 29124858
Guerrero-Feijóo E, Sintes E, Herndl GJ, Varela MM., Environ Microbiol 20(2), 2018
PMID: 29124858
Free-living chemoautotrophic and particle-attached heterotrophic prokaryotes dominate microbial assemblages along a pelagic redox gradient.
Suter EA, Pachiadaki M, Taylor GT, Astor Y, Edgcomb VP., Environ Microbiol 20(2), 2018
PMID: 29160034
Suter EA, Pachiadaki M, Taylor GT, Astor Y, Edgcomb VP., Environ Microbiol 20(2), 2018
PMID: 29160034
Organic matter processing by microbial communities throughout the Atlantic water column as revealed by metaproteomics.
Bergauer K, Fernandez-Guerra A, Garcia JAL, Sprenger RR, Stepanauskas R, Pachiadaki MG, Jensen ON, Herndl GJ., Proc Natl Acad Sci U S A 115(3), 2018
PMID: 29255014
Bergauer K, Fernandez-Guerra A, Garcia JAL, Sprenger RR, Stepanauskas R, Pachiadaki MG, Jensen ON, Herndl GJ., Proc Natl Acad Sci U S A 115(3), 2018
PMID: 29255014
Deep ocean prokaryotic communities are remarkably malleable when facing long-term starvation.
Sebastián M, Auguet JC, Restrepo-Ortiz CX, Sala MM, Marrasé C, Gasol JM., Environ Microbiol 20(2), 2018
PMID: 29159926
Sebastián M, Auguet JC, Restrepo-Ortiz CX, Sala MM, Marrasé C, Gasol JM., Environ Microbiol 20(2), 2018
PMID: 29159926
Contribution of Bicarbonate Assimilation to Carbon Pool Dynamics in the Deep Mediterranean Sea and Cultivation of Actively Nitrifying and CO2-Fixing Bathypelagic Prokaryotic Consortia.
La Cono V, Ruggeri G, Azzaro M, Crisafi F, Decembrini F, Denaro R, La Spada G, Maimone G, Monticelli LS, Smedile F, Giuliano L, Yakimov MM., Front Microbiol 9(), 2018
PMID: 29403458
La Cono V, Ruggeri G, Azzaro M, Crisafi F, Decembrini F, Denaro R, La Spada G, Maimone G, Monticelli LS, Smedile F, Giuliano L, Yakimov MM., Front Microbiol 9(), 2018
PMID: 29403458
Single-cell genomics of multiple uncultured stramenopiles reveals underestimated functional diversity across oceans.
Seeleuthner Y, Mondy S, Lombard V, Carradec Q, Pelletier E, Wessner M, Leconte J, Mangot JF, Poulain J, Labadie K, Logares R, Sunagawa S, de Berardinis V, Salanoubat M, Dimier C, Kandels-Lewis S, Picheral M, Searson S, Tara Oceans Coordinators, Pesant S, Poulton N, Stepanauskas R, Bork P, Bowler C, Hingamp P, Sullivan MB, Iudicone D, Massana R, Aury JM, Henrissat B, Karsenti E, Jaillon O, Sieracki M, de Vargas C, Wincker P., Nat Commun 9(1), 2018
PMID: 29358710
Seeleuthner Y, Mondy S, Lombard V, Carradec Q, Pelletier E, Wessner M, Leconte J, Mangot JF, Poulain J, Labadie K, Logares R, Sunagawa S, de Berardinis V, Salanoubat M, Dimier C, Kandels-Lewis S, Picheral M, Searson S, Tara Oceans Coordinators, Pesant S, Poulton N, Stepanauskas R, Bork P, Bowler C, Hingamp P, Sullivan MB, Iudicone D, Massana R, Aury JM, Henrissat B, Karsenti E, Jaillon O, Sieracki M, de Vargas C, Wincker P., Nat Commun 9(1), 2018
PMID: 29358710
Spatiotemporal Dynamics of Ammonia-Oxidizing Thaumarchaeota in Distinct Arctic Water Masses.
Müller O, Wilson B, Paulsen ML, Rumińska A, Armo HR, Bratbak G, Øvreås L., Front Microbiol 9(), 2018
PMID: 29410658
Müller O, Wilson B, Paulsen ML, Rumińska A, Armo HR, Bratbak G, Øvreås L., Front Microbiol 9(), 2018
PMID: 29410658
A virus or more in (nearly) every cell: ubiquitous networks of virus-host interactions in extreme environments.
Munson-McGee JH, Peng S, Dewerff S, Stepanauskas R, Whitaker RJ, Weitz JS, Young MJ., ISME J 12(7), 2018
PMID: 29467398
Munson-McGee JH, Peng S, Dewerff S, Stepanauskas R, Whitaker RJ, Weitz JS, Young MJ., ISME J 12(7), 2018
PMID: 29467398
Potential for primary productivity in a globally-distributed bacterial phototroph.
Graham ED, Heidelberg JF, Tully BJ., ISME J 12(7), 2018
PMID: 29523891
Graham ED, Heidelberg JF, Tully BJ., ISME J 12(7), 2018
PMID: 29523891
Metabolic potential and in situ transcriptomic profiles of previously uncharacterized key microbial groups involved in coupled carbon, nitrogen and sulfur cycling in anoxic marine zones.
Plominsky AM, Trefault N, Podell S, Blanton JM, De la Iglesia R, Allen EE, von Dassow P, Ulloa O., Environ Microbiol 20(8), 2018
PMID: 29575531
Plominsky AM, Trefault N, Podell S, Blanton JM, De la Iglesia R, Allen EE, von Dassow P, Ulloa O., Environ Microbiol 20(8), 2018
PMID: 29575531
Single-cell metagenomics: challenges and applications.
Xu Y, Zhao F., Protein Cell 9(5), 2018
PMID: 29696589
Xu Y, Zhao F., Protein Cell 9(5), 2018
PMID: 29696589
DNA-SIP Reveals the Diversity of Chemolithoautotrophic Bacteria Inhabiting Three Different Soil Types in Typical Karst Rocky Desertification Ecosystems in Southwest China.
Li B, Li Z, Sun X, Wang Q, Xiao E, Sun W., Microb Ecol 76(4), 2018
PMID: 29728707
Li B, Li Z, Sun X, Wang Q, Xiao E, Sun W., Microb Ecol 76(4), 2018
PMID: 29728707
Hydrothermal chimneys host habitat-specific microbial communities: analogues for studying the possible impact of mining seafloor massive sulfide deposits.
Han Y, Gonnella G, Adam N, Schippers A, Burkhardt L, Kurtz S, Schwarz-Schampera U, Franke H, Perner M., Sci Rep 8(1), 2018
PMID: 29991752
Han Y, Gonnella G, Adam N, Schippers A, Burkhardt L, Kurtz S, Schwarz-Schampera U, Franke H, Perner M., Sci Rep 8(1), 2018
PMID: 29991752
Agulhas Current properties shape microbial community diversity and potential functionality.
Phoma S, Vikram S, Jansson JK, Ansorge IJ, Cowan DA, Van de Peer Y, Makhalanyane TP., Sci Rep 8(1), 2018
PMID: 30002454
Phoma S, Vikram S, Jansson JK, Ansorge IJ, Cowan DA, Van de Peer Y, Makhalanyane TP., Sci Rep 8(1), 2018
PMID: 30002454
Comprehensive Insights Into Composition, Metabolic Potentials, and Interactions Among Archaeal, Bacterial, and Viral Assemblages in Meromictic Lake Shunet in Siberia.
Wu YT, Yang CY, Chiang PW, Tseng CH, Chiu HH, Saeed I, Baatar B, Rogozin D, Halgamuge S, Degermendzhi A, Tang SL., Front Microbiol 9(), 2018
PMID: 30177915
Wu YT, Yang CY, Chiang PW, Tseng CH, Chiu HH, Saeed I, Baatar B, Rogozin D, Halgamuge S, Degermendzhi A, Tang SL., Front Microbiol 9(), 2018
PMID: 30177915
A Long-Standing Complex Tropical Dipole Shapes Marine Microbial Biogeography.
Yan W, Zhang R, Jiao N., Appl Environ Microbiol 84(18), 2018
PMID: 29980556
Yan W, Zhang R, Jiao N., Appl Environ Microbiol 84(18), 2018
PMID: 29980556
Investigating the Composition and Metabolic Potential of Microbial Communities in Chocolate Pots Hot Springs.
Fortney NW, He S, Converse BJ, Boyd ES, Roden EE., Front Microbiol 9(), 2018
PMID: 30245673
Fortney NW, He S, Converse BJ, Boyd ES, Roden EE., Front Microbiol 9(), 2018
PMID: 30245673
Parallel Evolution of Genome Streamlining and Cellular Bioenergetics across the Marine Radiation of a Bacterial Phylum.
Getz EW, Tithi SS, Zhang L, Aylward FO., MBio 9(5), 2018
PMID: 30228235
Getz EW, Tithi SS, Zhang L, Aylward FO., MBio 9(5), 2018
PMID: 30228235
Genomes from uncultivated prokaryotes: a comparison of metagenome-assembled and single-amplified genomes.
Alneberg J, Karlsson CMG, Divne AM, Bergin C, Homa F, Lindh MV, Hugerth LW, Ettema TJG, Bertilsson S, Andersson AF, Pinhassi J., Microbiome 6(1), 2018
PMID: 30266101
Alneberg J, Karlsson CMG, Divne AM, Bergin C, Homa F, Lindh MV, Hugerth LW, Ettema TJG, Bertilsson S, Andersson AF, Pinhassi J., Microbiome 6(1), 2018
PMID: 30266101
Cultivation of a chemoautotroph from the SUP05 clade of marine bacteria that produces nitrite and consumes ammonium.
Shah V, Chang BX, Morris RM., ISME J 11(1), 2017
PMID: 27434424
Shah V, Chang BX, Morris RM., ISME J 11(1), 2017
PMID: 27434424
The Relative Abundance and Transcriptional Activity of Marine Sponge-Associated Microorganisms Emphasizing Groups Involved in Sulfur Cycle.
Jensen S, Fortunato SA, Hoffmann F, Hoem S, Rapp HT, Øvreås L, Torsvik VL., Microb Ecol 73(3), 2017
PMID: 27664049
Jensen S, Fortunato SA, Hoffmann F, Hoem S, Rapp HT, Øvreås L, Torsvik VL., Microb Ecol 73(3), 2017
PMID: 27664049
Single-cell genomics based on Raman sorting reveals novel carotenoid-containing bacteria in the Red Sea.
Song Y, Kaster AK, Vollmers J, Song Y, Davison PA, Frentrup M, Preston GM, Thompson IP, Murrell JC, Yin H, Hunter CN, Huang WE., Microb Biotechnol 10(1), 2017
PMID: 27748032
Song Y, Kaster AK, Vollmers J, Song Y, Davison PA, Frentrup M, Preston GM, Thompson IP, Murrell JC, Yin H, Hunter CN, Huang WE., Microb Biotechnol 10(1), 2017
PMID: 27748032
Metabolic and physiological interdependencies in the Bathymodiolus azoricus symbiosis.
Ponnudurai R, Kleiner M, Sayavedra L, Petersen JM, Moche M, Otto A, Becher D, Takeuchi T, Satoh N, Dubilier N, Schweder T, Markert S., ISME J 11(2), 2017
PMID: 27801908
Ponnudurai R, Kleiner M, Sayavedra L, Petersen JM, Moche M, Otto A, Becher D, Takeuchi T, Satoh N, Dubilier N, Schweder T, Markert S., ISME J 11(2), 2017
PMID: 27801908
Strategies to improve reference databases for soil microbiomes.
Choi J, Yang F, Stepanauskas R, Cardenas E, Garoutte A, Williams R, Flater J, Tiedje JM, Hofmockel KS, Gelder B, Howe A., ISME J 11(4), 2017
PMID: 27935589
Choi J, Yang F, Stepanauskas R, Cardenas E, Garoutte A, Williams R, Flater J, Tiedje JM, Hofmockel KS, Gelder B, Howe A., ISME J 11(4), 2017
PMID: 27935589
A Novel Small-Molecule Inhibitor of the Mycobacterium tuberculosis Demethylmenaquinone Methyltransferase MenG Is Bactericidal to Both Growing and Nutritionally Deprived Persister Cells.
Sukheja P, Kumar P, Mittal N, Li SG, Singleton E, Russo R, Perryman AL, Shrestha R, Awasthi D, Husain S, Soteropoulos P, Brukh R, Connell N, Freundlich JS, Alland D., MBio 8(1), 2017
PMID: 28196957
Sukheja P, Kumar P, Mittal N, Li SG, Singleton E, Russo R, Perryman AL, Shrestha R, Awasthi D, Husain S, Soteropoulos P, Brukh R, Connell N, Freundlich JS, Alland D., MBio 8(1), 2017
PMID: 28196957
SAR202 Genomes from the Dark Ocean Predict Pathways for the Oxidation of Recalcitrant Dissolved Organic Matter.
Landry Z, Swan BK, Herndl GJ, Stepanauskas R, Giovannoni SJ., MBio 8(2), 2017
PMID: 28420738
Landry Z, Swan BK, Herndl GJ, Stepanauskas R, Giovannoni SJ., MBio 8(2), 2017
PMID: 28420738
Role of EPS, Dispersant and Nutrients on the Microbial Response and MOS Formation in the Subarctic Northeast Atlantic.
Suja LD, Summers S, Gutierrez T., Front Microbiol 8(), 2017
PMID: 28484435
Suja LD, Summers S, Gutierrez T., Front Microbiol 8(), 2017
PMID: 28484435
Genomic exploration of individual giant ocean viruses.
Wilson WH, Gilg IC, Moniruzzaman M, Field EK, Koren S, LeCleir GR, Martínez Martínez J, Poulton NJ, Swan BK, Stepanauskas R, Wilhelm SW., ISME J 11(8), 2017
PMID: 28498373
Wilson WH, Gilg IC, Moniruzzaman M, Field EK, Koren S, LeCleir GR, Martínez Martínez J, Poulton NJ, Swan BK, Stepanauskas R, Wilhelm SW., ISME J 11(8), 2017
PMID: 28498373
CO2 assimilation strategies in stratified lakes: Diversity and distribution patterns of chemolithoautotrophs.
Alfreider A, Baumer A, Bogensperger T, Posch T, Salcher MM, Summerer M., Environ Microbiol 19(7), 2017
PMID: 28474482
Alfreider A, Baumer A, Bogensperger T, Posch T, Salcher MM, Summerer M., Environ Microbiol 19(7), 2017
PMID: 28474482
Short-chain alkanes fuel mussel and sponge Cycloclasticus symbionts from deep-sea gas and oil seeps.
Rubin-Blum M, Antony CP, Borowski C, Sayavedra L, Pape T, Sahling H, Bohrmann G, Kleiner M, Redmond MC, Valentine DL, Dubilier N., Nat Microbiol 2(), 2017
PMID: 28628098
Rubin-Blum M, Antony CP, Borowski C, Sayavedra L, Pape T, Sahling H, Bohrmann G, Kleiner M, Redmond MC, Valentine DL, Dubilier N., Nat Microbiol 2(), 2017
PMID: 28628098
Single-virus genomics reveals hidden cosmopolitan and abundant viruses.
Martinez-Hernandez F, Fornas O, Lluesma Gomez M, Bolduc B, de la Cruz Peña MJ, Martínez JM, Anton J, Gasol JM, Rosselli R, Rodriguez-Valera F, Sullivan MB, Acinas SG, Martinez-Garcia M., Nat Commun 8(), 2017
PMID: 28643787
Martinez-Hernandez F, Fornas O, Lluesma Gomez M, Bolduc B, de la Cruz Peña MJ, Martínez JM, Anton J, Gasol JM, Rosselli R, Rodriguez-Valera F, Sullivan MB, Acinas SG, Martinez-Garcia M., Nat Commun 8(), 2017
PMID: 28643787
Unexpected genomic features in widespread intracellular bacteria: evidence for motility of marine chlamydiae.
Collingro A, Köstlbacher S, Mussmann M, Stepanauskas R, Hallam SJ, Horn M., ISME J 11(10), 2017
PMID: 28644443
Collingro A, Köstlbacher S, Mussmann M, Stepanauskas R, Hallam SJ, Horn M., ISME J 11(10), 2017
PMID: 28644443
Improved genome recovery and integrated cell-size analyses of individual uncultured microbial cells and viral particles.
Stepanauskas R, Fergusson EA, Brown J, Poulton NJ, Tupper B, Labonté JM, Becraft ED, Brown JM, Pachiadaki MG, Povilaitis T, Thompson BP, Mascena CJ, Bellows WK, Lubys A., Nat Commun 8(1), 2017
PMID: 28729688
Stepanauskas R, Fergusson EA, Brown J, Poulton NJ, Tupper B, Labonté JM, Becraft ED, Brown JM, Pachiadaki MG, Povilaitis T, Thompson BP, Mascena CJ, Bellows WK, Lubys A., Nat Commun 8(1), 2017
PMID: 28729688
Marine archaeal dynamics and interactions with the microbial community over 5 years from surface to seafloor.
Parada AE, Fuhrman JA., ISME J 11(11), 2017
PMID: 28731479
Parada AE, Fuhrman JA., ISME J 11(11), 2017
PMID: 28731479
Present and Future of Culturing Bacteria.
Overmann J, Abt B, Sikorski J., Annu Rev Microbiol 71(), 2017
PMID: 28731846
Overmann J, Abt B, Sikorski J., Annu Rev Microbiol 71(), 2017
PMID: 28731846
Exploring Microdiversity in Novel Kordia sp. (Bacteroidetes) with Proteorhodopsin from the Tropical Indian Ocean via Single Amplified Genomes.
Royo-Llonch M, Ferrera I, Cornejo-Castillo FM, Sánchez P, Salazar G, Stepanauskas R, González JM, Sieracki ME, Speich S, Stemmann L, Pedrós-Alió C, Acinas SG., Front Microbiol 8(), 2017
PMID: 28790980
Royo-Llonch M, Ferrera I, Cornejo-Castillo FM, Sánchez P, Salazar G, Stepanauskas R, González JM, Sieracki ME, Speich S, Stemmann L, Pedrós-Alió C, Acinas SG., Front Microbiol 8(), 2017
PMID: 28790980
Sulfide production and oxidation by heterotrophic bacteria under aerobic conditions.
Xia Y, Lü C, Hou N, Xin Y, Liu J, Liu H, Xun L., ISME J 11(12), 2017
PMID: 28777380
Xia Y, Lü C, Hou N, Xin Y, Liu J, Liu H, Xun L., ISME J 11(12), 2017
PMID: 28777380
Environmental drivers of a microbial genomic transition zone in the ocean's interior.
Mende DR, Bryant JA, Aylward FO, Eppley JM, Nielsen T, Karl DM, DeLong EF., Nat Microbiol 2(10), 2017
PMID: 28808230
Mende DR, Bryant JA, Aylward FO, Eppley JM, Nielsen T, Karl DM, DeLong EF., Nat Microbiol 2(10), 2017
PMID: 28808230
Evaluation of single-cell genomics to address evolutionary questions using three SAGs of the choanoflagellate Monosiga brevicollis.
López-Escardó D, Grau-Bové X, Guillaumet-Adkins A, Gut M, Sieracki ME, Ruiz-Trillo I., Sci Rep 7(1), 2017
PMID: 28887541
López-Escardó D, Grau-Bové X, Guillaumet-Adkins A, Gut M, Sieracki ME, Ruiz-Trillo I., Sci Rep 7(1), 2017
PMID: 28887541
Single-cell sequencing unveils the lifestyle and CRISPR-based population history of Hydrotalea sp. in acid mine drainage.
Medeiros JD, Leite LR, Pylro VS, Oliveira FS, Almeida VM, Fernandes GR, Salim ACM, Araújo FMG, Volpini AC, Oliveira G, Cuadros-Orellana S., Mol Ecol 26(20), 2017
PMID: 28802076
Medeiros JD, Leite LR, Pylro VS, Oliveira FS, Almeida VM, Fernandes GR, Salim ACM, Araújo FMG, Volpini AC, Oliveira G, Cuadros-Orellana S., Mol Ecol 26(20), 2017
PMID: 28802076
Recent Developments on Genetic Engineering of Microalgae for Biofuels and Bio-Based Chemicals.
Ng IS, Tan SI, Kao PH, Chang YK, Chang JS., Biotechnol J 12(10), 2017
PMID: 28786539
Ng IS, Tan SI, Kao PH, Chang YK, Chang JS., Biotechnol J 12(10), 2017
PMID: 28786539
Tools for Genomic and Transcriptomic Analysis of Microbes at Single-Cell Level.
Chen Z, Chen L, Zhang W., Front Microbiol 8(), 2017
PMID: 28979258
Chen Z, Chen L, Zhang W., Front Microbiol 8(), 2017
PMID: 28979258
Beyond the bulk: disclosing the life of single microbial cells.
Rosenthal K, Oehling V, Dusny C, Schmid A., FEMS Microbiol Rev 41(6), 2017
PMID: 29029257
Rosenthal K, Oehling V, Dusny C, Schmid A., FEMS Microbiol Rev 41(6), 2017
PMID: 29029257
Adaptability as the key to success for the ubiquitous marine nitrite oxidizer Nitrococcus.
Füssel J, Lücker S, Yilmaz P, Nowka B, van Kessel MAHJ, Bourceau P, Hach PF, Littmann S, Berg J, Spieck E, Daims H, Kuypers MMM, Lam P., Sci Adv 3(11), 2017
PMID: 29109973
Füssel J, Lücker S, Yilmaz P, Nowka B, van Kessel MAHJ, Bourceau P, Hach PF, Littmann S, Berg J, Spieck E, Daims H, Kuypers MMM, Lam P., Sci Adv 3(11), 2017
PMID: 29109973
Major role of nitrite-oxidizing bacteria in dark ocean carbon fixation.
Pachiadaki MG, Sintes E, Bergauer K, Brown JM, Record NR, Swan BK, Mathyer ME, Hallam SJ, Lopez-Garcia P, Takaki Y, Nunoura T, Woyke T, Herndl GJ, Stepanauskas R., Science 358(6366), 2017
PMID: 29170234
Pachiadaki MG, Sintes E, Bergauer K, Brown JM, Record NR, Swan BK, Mathyer ME, Hallam SJ, Lopez-Garcia P, Takaki Y, Nunoura T, Woyke T, Herndl GJ, Stepanauskas R., Science 358(6366), 2017
PMID: 29170234
Metabolic potential and in situ activity of marine Marinimicrobia bacteria in an anoxic water column.
Bertagnolli AD, Padilla CC, Glass JB, Thamdrup B, Stewart FJ., Environ Microbiol 19(11), 2017
PMID: 28771968
Bertagnolli AD, Padilla CC, Glass JB, Thamdrup B, Stewart FJ., Environ Microbiol 19(11), 2017
PMID: 28771968
Ocean biogeochemistry modeled with emergent trait-based genomics.
Coles VJ, Stukel MR, Brooks MT, Burd A, Crump BC, Moran MA, Paul JH, Satinsky BM, Yager PL, Zielinski BL, Hood RR., Science 358(6367), 2017
PMID: 29191900
Coles VJ, Stukel MR, Brooks MT, Burd A, Crump BC, Moran MA, Paul JH, Satinsky BM, Yager PL, Zielinski BL, Hood RR., Science 358(6367), 2017
PMID: 29191900
Homoacetogenesis in Deep-Sea Chloroflexi, as Inferred by Single-Cell Genomics, Provides a Link to Reductive Dehalogenation in Terrestrial Dehalococcoidetes.
Sewell HL, Kaster AK, Spormann AM., MBio 8(6), 2017
PMID: 29259088
Sewell HL, Kaster AK, Spormann AM., MBio 8(6), 2017
PMID: 29259088
Metagenomic resolution of microbial functions in deep-sea hydrothermal plumes across the Eastern Lau Spreading Center.
Anantharaman K, Breier JA, Dick GJ., ISME J 10(1), 2016
PMID: 26046257
Anantharaman K, Breier JA, Dick GJ., ISME J 10(1), 2016
PMID: 26046257
Diverse, rare microbial taxa responded to the Deepwater Horizon deep-sea hydrocarbon plume.
Kleindienst S, Grim S, Sogin M, Bracco A, Crespo-Medina M, Joye SB., ISME J 10(2), 2016
PMID: 26230048
Kleindienst S, Grim S, Sogin M, Bracco A, Crespo-Medina M, Joye SB., ISME J 10(2), 2016
PMID: 26230048
Single-cell technologies in environmental omics.
Kodzius R, Gojobori T., Gene 576(2 pt 1), 2016
PMID: 26474748
Kodzius R, Gojobori T., Gene 576(2 pt 1), 2016
PMID: 26474748
Wind and sunlight shape microbial diversity in surface waters of the North Pacific Subtropical Gyre.
Bryant JA, Aylward FO, Eppley JM, Karl DM, Church MJ, DeLong EF., ISME J 10(6), 2016
PMID: 26645474
Bryant JA, Aylward FO, Eppley JM, Karl DM, Church MJ, DeLong EF., ISME J 10(6), 2016
PMID: 26645474
Diversification and niche adaptations of Nitrospina-like bacteria in the polyextreme interfaces of Red Sea brines.
Ngugi DK, Blom J, Stepanauskas R, Stingl U., ISME J 10(6), 2016
PMID: 26657763
Ngugi DK, Blom J, Stepanauskas R, Stingl U., ISME J 10(6), 2016
PMID: 26657763
Microbial Surface Colonization and Biofilm Development in Marine Environments.
Dang H, Lovell CR., Microbiol Mol Biol Rev 80(1), 2016
PMID: 26700108
Dang H, Lovell CR., Microbiol Mol Biol Rev 80(1), 2016
PMID: 26700108
Draft Genome Sequence of Uncultured SAR324 Bacterium lautmerah10, Binned from a Red Sea Metagenome.
Haroon MF, Thompson LR, Stingl U., Genome Announc 4(1), 2016
PMID: 26868398
Haroon MF, Thompson LR, Stingl U., Genome Announc 4(1), 2016
PMID: 26868398
Improved Environmental Genomes via Integration of Metagenomic and Single-Cell Assemblies.
Mende DR, Aylward FO, Eppley JM, Nielsen TN, DeLong EF., Front Microbiol 7(), 2016
PMID: 26904016
Mende DR, Aylward FO, Eppley JM, Nielsen TN, DeLong EF., Front Microbiol 7(), 2016
PMID: 26904016
Ubiquitous Gammaproteobacteria dominate dark carbon fixation in coastal sediments.
Dyksma S, Bischof K, Fuchs BM, Hoffmann K, Meier D, Meyerdierks A, Pjevac P, Probandt D, Richter M, Stepanauskas R, Mußmann M., ISME J 10(8), 2016
PMID: 26872043
Dyksma S, Bischof K, Fuchs BM, Hoffmann K, Meier D, Meyerdierks A, Pjevac P, Probandt D, Richter M, Stepanauskas R, Mußmann M., ISME J 10(8), 2016
PMID: 26872043
Novel microbial assemblages inhabiting crustal fluids within mid-ocean ridge flank subsurface basalt.
Jungbluth SP, Bowers RM, Lin HT, Cowen JP, Rappé MS., ISME J 10(8), 2016
PMID: 26872042
Jungbluth SP, Bowers RM, Lin HT, Cowen JP, Rappé MS., ISME J 10(8), 2016
PMID: 26872042
Culture-independent method for identification of microbial enzyme-encoding genes by activity-based single-cell sequencing using a water-in-oil microdroplet platform.
Nakamura K, Iizuka R, Nishi S, Yoshida T, Hatada Y, Takaki Y, Iguchi A, Yoon DH, Sekiguchi T, Shoji S, Funatsu T., Sci Rep 6(), 2016
PMID: 26915788
Nakamura K, Iizuka R, Nishi S, Yoshida T, Hatada Y, Takaki Y, Iguchi A, Yoon DH, Sekiguchi T, Shoji S, Funatsu T., Sci Rep 6(), 2016
PMID: 26915788
Deciphering ocean carbon in a changing world.
Moran MA, Kujawinski EB, Stubbins A, Fatland R, Aluwihare LI, Buchan A, Crump BC, Dorrestein PC, Dyhrman ST, Hess NJ, Howe B, Longnecker K, Medeiros PM, Niggemann J, Obernosterer I, Repeta DJ, Waldbauer JR., Proc Natl Acad Sci U S A 113(12), 2016
PMID: 26951682
Moran MA, Kujawinski EB, Stubbins A, Fatland R, Aluwihare LI, Buchan A, Crump BC, Dorrestein PC, Dyhrman ST, Hess NJ, Howe B, Longnecker K, Medeiros PM, Niggemann J, Obernosterer I, Repeta DJ, Waldbauer JR., Proc Natl Acad Sci U S A 113(12), 2016
PMID: 26951682
Delta-proteobacterial SAR324 group in hydrothermal plumes on the South Mid-Atlantic Ridge.
Cao H, Dong C, Bougouffa S, Li J, Zhang W, Shao Z, Bajic VB, Qian PY., Sci Rep 6(), 2016
PMID: 26953077
Cao H, Dong C, Bougouffa S, Li J, Zhang W, Shao Z, Bajic VB, Qian PY., Sci Rep 6(), 2016
PMID: 26953077
Identification of Associations between Bacterioplankton and Photosynthetic Picoeukaryotes in Coastal Waters.
Farnelid HM, Turk-Kubo KA, Zehr JP., Front Microbiol 7(), 2016
PMID: 27148165
Farnelid HM, Turk-Kubo KA, Zehr JP., Front Microbiol 7(), 2016
PMID: 27148165
Connectivity between surface and deep waters determines prokaryotic diversity in the North Atlantic Deep Water.
Frank AH, Garcia JA, Herndl GJ, Reinthaler T., Environ Microbiol 18(6), 2016
PMID: 26914787
Frank AH, Garcia JA, Herndl GJ, Reinthaler T., Environ Microbiol 18(6), 2016
PMID: 26914787
Coral-Associated Bacterial Diversity Is Conserved across Two Deep-Sea Anthothela Species.
Lawler SN, Kellogg CA, France SC, Clostio RW, Brooke SD, Ross SW., Front Microbiol 7(), 2016
PMID: 27092120
Lawler SN, Kellogg CA, France SC, Clostio RW, Brooke SD, Ross SW., Front Microbiol 7(), 2016
PMID: 27092120
Metagenomic analysis of nitrogen and methane cycling in the Arabian Sea oxygen minimum zone.
Lüke C, Speth DR, Kox MAR, Villanueva L, Jetten MSM., PeerJ 4(), 2016
PMID: 27077014
Lüke C, Speth DR, Kox MAR, Villanueva L, Jetten MSM., PeerJ 4(), 2016
PMID: 27077014
Toward a Predictive Understanding of Earth's Microbiomes to Address 21st Century Challenges.
Blaser MJ, Cardon ZG, Cho MK, Dangl JL, Donohue TJ, Green JL, Knight R, Maxon ME, Northen TR, Pollard KS, Brodie EL., MBio 7(3), 2016
PMID: 27178263
Blaser MJ, Cardon ZG, Cho MK, Dangl JL, Donohue TJ, Green JL, Knight R, Maxon ME, Northen TR, Pollard KS, Brodie EL., MBio 7(3), 2016
PMID: 27178263
Efficient Synergistic Single-Cell Genome Assembly.
Movahedi NS, Embree M, Nagarajan H, Zengler K, Chitsaz H., Front Bioeng Biotechnol 4(), 2016
PMID: 27243002
Movahedi NS, Embree M, Nagarajan H, Zengler K, Chitsaz H., Front Bioeng Biotechnol 4(), 2016
PMID: 27243002
Ultrastructural and Single-Cell-Level Characterization Reveals Metabolic Versatility in a Microbial Eukaryote Community from an Ice-Covered Antarctic Lake.
Li W, Podar M, Morgan-Kiss RM., Appl Environ Microbiol 82(12), 2016
PMID: 27084010
Li W, Podar M, Morgan-Kiss RM., Appl Environ Microbiol 82(12), 2016
PMID: 27084010
Chemolithoautotrophy supports macroinvertebrate food webs and affects diversity and stability in groundwater communities.
Hutchins BT, Engel AS, Nowlin WH, Schwartz BF., Ecology 97(6), 2016
PMID: 27459783
Hutchins BT, Engel AS, Nowlin WH, Schwartz BF., Ecology 97(6), 2016
PMID: 27459783
Microbial community diversity, structure and assembly across oxygen gradients in meromictic marine lakes, Palau.
Meyerhof MS, Wilson JM, Dawson MN, Michael Beman J., Environ Microbiol 18(12), 2016
PMID: 27312889
Meyerhof MS, Wilson JM, Dawson MN, Michael Beman J., Environ Microbiol 18(12), 2016
PMID: 27312889
SAR11 bacteria linked to ocean anoxia and nitrogen loss.
Tsementzi D, Wu J, Deutsch S, Nath S, Rodriguez-R LM, Burns AS, Ranjan P, Sarode N, Malmstrom RR, Padilla CC, Stone BK, Bristow LA, Larsen M, Glass JB, Thamdrup B, Woyke T, Konstantinidis KT, Stewart FJ., Nature 536(7615), 2016
PMID: 27487207
Tsementzi D, Wu J, Deutsch S, Nath S, Rodriguez-R LM, Burns AS, Ranjan P, Sarode N, Malmstrom RR, Padilla CC, Stone BK, Bristow LA, Larsen M, Glass JB, Thamdrup B, Woyke T, Konstantinidis KT, Stewart FJ., Nature 536(7615), 2016
PMID: 27487207
Distribution and Niche Separation of Planktonic Microbial Communities in the Water Columns from the Surface to the Hadal Waters of the Japan Trench under the Eutrophic Ocean.
Nunoura T, Hirai M, Yoshida-Takashima Y, Nishizawa M, Kawagucci S, Yokokawa T, Miyazaki J, Koide O, Makita H, Takaki Y, Sunamura M, Takai K., Front Microbiol 7(), 2016
PMID: 27559333
Nunoura T, Hirai M, Yoshida-Takashima Y, Nishizawa M, Kawagucci S, Yokokawa T, Miyazaki J, Koide O, Makita H, Takaki Y, Sunamura M, Takai K., Front Microbiol 7(), 2016
PMID: 27559333
Genomic, physiologic, and proteomic insights into metabolic versatility in Roseobacter clade bacteria isolated from deep-sea water.
Tang K, Yang Y, Lin D, Li S, Zhou W, Han Y, Liu K, Jiao N., Sci Rep 6(), 2016
PMID: 27762339
Tang K, Yang Y, Lin D, Li S, Zhou W, Han Y, Liu K, Jiao N., Sci Rep 6(), 2016
PMID: 27762339
Prokaryotic Responses to Ammonium and Organic Carbon Reveal Alternative CO2 Fixation Pathways and Importance of Alkaline Phosphatase in the Mesopelagic North Atlantic.
Baltar F, Lundin D, Palovaara J, Lekunberri I, Reinthaler T, Herndl GJ, Pinhassi J., Front Microbiol 7(), 2016
PMID: 27818655
Baltar F, Lundin D, Palovaara J, Lekunberri I, Reinthaler T, Herndl GJ, Pinhassi J., Front Microbiol 7(), 2016
PMID: 27818655
Identity of major sulfur-cycle prokaryotes in freshwater lake ecosystems revealed by a comprehensive phylogenetic study of the dissimilatory adenylylsulfate reductase.
Watanabe T, Kojima H, Fukui M., Sci Rep 6(), 2016
PMID: 27824124
Watanabe T, Kojima H, Fukui M., Sci Rep 6(), 2016
PMID: 27824124
acdc - Automated Contamination Detection and Confidence estimation for single-cell genome data.
Lux M, Krüger J, Rinke C, Maus I, Schlüter A, Woyke T, Sczyrba A, Hammer B., BMC Bioinformatics 17(1), 2016
PMID: 27998267
Lux M, Krüger J, Rinke C, Maus I, Schlüter A, Woyke T, Sczyrba A, Hammer B., BMC Bioinformatics 17(1), 2016
PMID: 27998267
Norwegian deep-water coral reefs: cultivation and molecular analysis of planktonic microbial communities.
Jensen S, Lynch MD, Ray JL, Neufeld JD, Hovland M., Environ Microbiol 17(10), 2015
PMID: 24911121
Jensen S, Lynch MD, Ray JL, Neufeld JD, Hovland M., Environ Microbiol 17(10), 2015
PMID: 24911121
The size-reactivity continuum of major bioelements in the ocean.
Benner R, Amon RM., Ann Rev Mar Sci 7(), 2015
PMID: 25062478
Benner R, Amon RM., Ann Rev Mar Sci 7(), 2015
PMID: 25062478
Seasonal and interannual variability of the marine bacterioplankton community throughout the water column over ten years.
Cram JA, Chow CE, Sachdeva R, Needham DM, Parada AE, Steele JA, Fuhrman JA., ISME J 9(3), 2015
PMID: 25203836
Cram JA, Chow CE, Sachdeva R, Needham DM, Parada AE, Steele JA, Fuhrman JA., ISME J 9(3), 2015
PMID: 25203836
Microbial community diversity and physical-chemical features of the Southwestern Atlantic Ocean.
Alves Junior N, Meirelles PM, de Oliveira Santos E, Dutilh B, Silva GG, Paranhos R, Cabral AS, Rezende C, Iida T, de Moura RL, Kruger RH, Pereira RC, Valle R, Sawabe T, Thompson C, Thompson F., Arch Microbiol 197(2), 2015
PMID: 25205422
Alves Junior N, Meirelles PM, de Oliveira Santos E, Dutilh B, Silva GG, Paranhos R, Cabral AS, Rezende C, Iida T, de Moura RL, Kruger RH, Pereira RC, Valle R, Sawabe T, Thompson C, Thompson F., Arch Microbiol 197(2), 2015
PMID: 25205422
Methyloprofundus sedimenti gen. nov., sp. nov., an obligate methanotroph from ocean sediment belonging to the 'deep sea-1' clade of marine methanotrophs.
Tavormina PL, Hatzenpichler R, McGlynn S, Chadwick G, Dawson KS, Connon SA, Orphan VJ., Int J Syst Evol Microbiol 65(pt 1), 2015
PMID: 25342114
Tavormina PL, Hatzenpichler R, McGlynn S, Chadwick G, Dawson KS, Connon SA, Orphan VJ., Int J Syst Evol Microbiol 65(pt 1), 2015
PMID: 25342114
Phylogenetic and environmental diversity of DsrAB-type dissimilatory (bi)sulfite reductases.
Müller AL, Kjeldsen KU, Rattei T, Pester M, Loy A., ISME J 9(5), 2015
PMID: 25343514
Müller AL, Kjeldsen KU, Rattei T, Pester M, Loy A., ISME J 9(5), 2015
PMID: 25343514
Community shift from phototrophic to chemotrophic sulfide oxidation following anoxic holomixis in a stratified seawater lake.
Pjevac P, Korlević M, Berg JS, Bura-Nakić E, Ciglenečki I, Amann R, Orlić S., Appl Environ Microbiol 81(1), 2015
PMID: 25344237
Pjevac P, Korlević M, Berg JS, Bura-Nakić E, Ciglenečki I, Amann R, Orlić S., Appl Environ Microbiol 81(1), 2015
PMID: 25344237
Expanding the World of Marine Bacterial and Archaeal Clades.
Yilmaz P, Yarza P, Rapp JZ, Glöckner FO., Front Microbiol 6(), 2015
PMID: 26779174
Yilmaz P, Yarza P, Rapp JZ, Glöckner FO., Front Microbiol 6(), 2015
PMID: 26779174
Hadal biosphere: insight into the microbial ecosystem in the deepest ocean on Earth.
Nunoura T, Takaki Y, Hirai M, Shimamura S, Makabe A, Koide O, Kikuchi T, Miyazaki J, Koba K, Yoshida N, Sunamura M, Takai K., Proc Natl Acad Sci U S A 112(11), 2015
PMID: 25713387
Nunoura T, Takaki Y, Hirai M, Shimamura S, Makabe A, Koide O, Kikuchi T, Miyazaki J, Koba K, Yoshida N, Sunamura M, Takai K., Proc Natl Acad Sci U S A 112(11), 2015
PMID: 25713387
The use of evolutionary approaches to understand single cell genomes.
Luo H., Front Microbiol 6(), 2015
PMID: 25806025
Luo H., Front Microbiol 6(), 2015
PMID: 25806025
Genomic insights into the uncultivated marine Zetaproteobacteria at Loihi Seamount.
Field EK, Sczyrba A, Lyman AE, Harris CC, Woyke T, Stepanauskas R, Emerson D., ISME J 9(4), 2015
PMID: 25303714
Field EK, Sczyrba A, Lyman AE, Harris CC, Woyke T, Stepanauskas R, Emerson D., ISME J 9(4), 2015
PMID: 25303714
The unique chemistry of Eastern Mediterranean water masses selects for distinct microbial communities by depth.
Techtmann SM, Fortney JL, Ayers KA, Joyner DC, Linley TD, Pfiffner SM, Hazen TC., PLoS One 10(3), 2015
PMID: 25807542
Techtmann SM, Fortney JL, Ayers KA, Joyner DC, Linley TD, Pfiffner SM, Hazen TC., PLoS One 10(3), 2015
PMID: 25807542
Marine sequestration of carbon in bacterial metabolites.
Lechtenfeld OJ, Hertkorn N, Shen Y, Witt M, Benner R., Nat Commun 6(), 2015
PMID: 25826720
Lechtenfeld OJ, Hertkorn N, Shen Y, Witt M, Benner R., Nat Commun 6(), 2015
PMID: 25826720
Single-cell genomics-based analysis of virus-host interactions in marine surface bacterioplankton.
Labonté JM, Swan BK, Poulos B, Luo H, Koren S, Hallam SJ, Sullivan MB, Woyke T, Wommack KE, Stepanauskas R., ISME J 9(11), 2015
PMID: 25848873
Labonté JM, Swan BK, Poulos B, Luo H, Koren S, Hallam SJ, Sullivan MB, Woyke T, Wommack KE, Stepanauskas R., ISME J 9(11), 2015
PMID: 25848873
Single-cell genomics of a rare environmental alphaproteobacterium provides unique insights into Rickettsiaceae evolution.
Martijn J, Schulz F, Zaremba-Niedzwiedzka K, Viklund J, Stepanauskas R, Andersson SG, Horn M, Guy L, Ettema TJ., ISME J 9(11), 2015
PMID: 25848874
Martijn J, Schulz F, Zaremba-Niedzwiedzka K, Viklund J, Stepanauskas R, Andersson SG, Horn M, Guy L, Ettema TJ., ISME J 9(11), 2015
PMID: 25848874
Size-fraction partitioning of community gene transcription and nitrogen metabolism in a marine oxygen minimum zone.
Ganesh S, Bristow LA, Larsen M, Sarode N, Thamdrup B, Stewart FJ., ISME J 9(12), 2015
PMID: 25848875
Ganesh S, Bristow LA, Larsen M, Sarode N, Thamdrup B, Stewart FJ., ISME J 9(12), 2015
PMID: 25848875
Shifts in the meso- and bathypelagic archaea communities composition during recovery and short-term handling of decompressed deep-sea samples.
La Cono V, Smedile F, La Spada G, Arcadi E, Genovese M, Ruggeri G, Genovese L, Giuliano L, Yakimov MM., Environ Microbiol Rep 7(3), 2015
PMID: 25682761
La Cono V, Smedile F, La Spada G, Arcadi E, Genovese M, Ruggeri G, Genovese L, Giuliano L, Yakimov MM., Environ Microbiol Rep 7(3), 2015
PMID: 25682761
The hidden seasonality of the rare biosphere in coastal marine bacterioplankton.
Alonso-Sáez L, Díaz-Pérez L, Morán XA., Environ Microbiol 17(10), 2015
PMID: 25684402
Alonso-Sáez L, Díaz-Pérez L, Morán XA., Environ Microbiol 17(10), 2015
PMID: 25684402
Wiretapping into microbial interactions by single cell genomics.
Stepanauskas R., Front Microbiol 6(), 2015
PMID: 25904902
Stepanauskas R., Front Microbiol 6(), 2015
PMID: 25904902
Single cell genomics indicates horizontal gene transfer and viral infections in a deep subsurface Firmicutes population.
Labonté JM, Field EK, Lau M, Chivian D, Van Heerden E, Wommack KE, Kieft TL, Onstott TC, Stepanauskas R., Front Microbiol 6(), 2015
PMID: 25954269
Labonté JM, Field EK, Lau M, Chivian D, Van Heerden E, Wommack KE, Kieft TL, Onstott TC, Stepanauskas R., Front Microbiol 6(), 2015
PMID: 25954269
Transcriptomic evidence for microbial sulfur cycling in the eastern tropical North Pacific oxygen minimum zone.
Carolan MT, Smith JM, Beman JM., Front Microbiol 6(), 2015
PMID: 26029168
Carolan MT, Smith JM, Beman JM., Front Microbiol 6(), 2015
PMID: 26029168
Cross-depth analysis of marine bacterial networks suggests downward propagation of temporal changes.
Cram JA, Xia LC, Needham DM, Sachdeva R, Sun F, Fuhrman JA., ISME J 9(12), 2015
PMID: 25989373
Cram JA, Xia LC, Needham DM, Sachdeva R, Sun F, Fuhrman JA., ISME J 9(12), 2015
PMID: 25989373
Microbial community structure and function on sinking particles in the North Pacific Subtropical Gyre.
Fontanez KM, Eppley JM, Samo TJ, Karl DM, DeLong EF., Front Microbiol 6(), 2015
PMID: 26042105
Fontanez KM, Eppley JM, Samo TJ, Karl DM, DeLong EF., Front Microbiol 6(), 2015
PMID: 26042105
VirSorter: mining viral signal from microbial genomic data.
Roux S, Enault F, Hurwitz BL, Sullivan MB., PeerJ 3(), 2015
PMID: 26038737
Roux S, Enault F, Hurwitz BL, Sullivan MB., PeerJ 3(), 2015
PMID: 26038737
Zonation of bacterioplankton communities along aging upwelled water in the northern Benguela upwelling.
Bergen B, Herlemann DP, Jürgens K., Front Microbiol 6(), 2015
PMID: 26150812
Bergen B, Herlemann DP, Jürgens K., Front Microbiol 6(), 2015
PMID: 26150812
Phylogenetic Diversity of aprA Genes in Subseafloor Sediments on the Northwestern Pacific Margin off Japan.
Aoki M, Kakiuchi R, Yamaguchi T, Takai K, Inagaki F, Imachi H., Microbes Environ 30(3), 2015
PMID: 26156553
Aoki M, Kakiuchi R, Yamaguchi T, Takai K, Inagaki F, Imachi H., Microbes Environ 30(3), 2015
PMID: 26156553
The dynamics of the bacterial diversity in the redox transition and anoxic zones of the Cariaco Basin assessed by parallel tag sequencing.
Rodriguez-Mora MJ, Scranton MI, Taylor GT, Chistoserdov AY., FEMS Microbiol Ecol 91(9), 2015
PMID: 26209697
Rodriguez-Mora MJ, Scranton MI, Taylor GT, Chistoserdov AY., FEMS Microbiol Ecol 91(9), 2015
PMID: 26209697
Abundant Atribacteria in deep marine sediment from the Adélie Basin, Antarctica.
Carr SA, Orcutt BN, Mandernack KW, Spear JR., Front Microbiol 6(), 2015
PMID: 26379647
Carr SA, Orcutt BN, Mandernack KW, Spear JR., Front Microbiol 6(), 2015
PMID: 26379647
Nanoarchaeota, Their Sulfolobales Host, and Nanoarchaeota Virus Distribution across Yellowstone National Park Hot Springs.
Munson-McGee JH, Field EK, Bateson M, Rooney C, Stepanauskas R, Young MJ., Appl Environ Microbiol 81(22), 2015
PMID: 26341207
Munson-McGee JH, Field EK, Bateson M, Rooney C, Stepanauskas R, Young MJ., Appl Environ Microbiol 81(22), 2015
PMID: 26341207
Metaproteomics of aquatic microbial communities in a deep and stratified estuary.
Colatriano D, Ramachandran A, Yergeau E, Maranger R, Gélinas Y, Walsh DA., Proteomics 15(20), 2015
PMID: 26223443
Colatriano D, Ramachandran A, Yergeau E, Maranger R, Gélinas Y, Walsh DA., Proteomics 15(20), 2015
PMID: 26223443
An Aquatic Microbial Metaproteomics Workflow: From Cells to Tryptic Peptides Suitable for Tandem Mass Spectrometry-based Analysis.
Colatriano D, Walsh DA., J Vis Exp (103), 2015
PMID: 26437334
Colatriano D, Walsh DA., J Vis Exp (103), 2015
PMID: 26437334
Turbulence-driven shifts in holobionts and planktonic microbial assemblages in St. Peter and St. Paul Archipelago, Mid-Atlantic Ridge, Brazil.
Moreira AP, Meirelles PM, Santos Ede O, Amado-Filho GM, Francini-Filho RB, Thompson CC, Thompson FL., Front Microbiol 6(), 2015
PMID: 26483769
Moreira AP, Meirelles PM, Santos Ede O, Amado-Filho GM, Francini-Filho RB, Thompson CC, Thompson FL., Front Microbiol 6(), 2015
PMID: 26483769
Genome Sequence of "Candidatus Thioglobus singularis" Strain PS1, a Mixotroph from the SUP05 Clade of Marine Gammaproteobacteria.
Marshall KT, Morris RM., Genome Announc 3(5), 2015
PMID: 26494659
Marshall KT, Morris RM., Genome Announc 3(5), 2015
PMID: 26494659
Identification and characterization of multiple rubisco activases in chemoautotrophic bacteria.
Tsai YC, Lapina MC, Bhushan S, Mueller-Cajar O., Nat Commun 6(), 2015
PMID: 26567524
Tsai YC, Lapina MC, Bhushan S, Mueller-Cajar O., Nat Commun 6(), 2015
PMID: 26567524
Metabolic flexibility of enigmatic SAR324 revealed through metagenomics and metatranscriptomics.
Sheik CS, Jain S, Dick GJ., Environ Microbiol 16(1), 2014
PMID: 23809230
Sheik CS, Jain S, Dick GJ., Environ Microbiol 16(1), 2014
PMID: 23809230
Novel hydrocarbon monooxygenase genes in the metatranscriptome of a natural deep-sea hydrocarbon plume.
Li M, Jain S, Baker BJ, Taylor C, Dick GJ., Environ Microbiol 16(1), 2014
PMID: 23826624
Li M, Jain S, Baker BJ, Taylor C, Dick GJ., Environ Microbiol 16(1), 2014
PMID: 23826624
Is metagenomics resolving identification of functions in microbial communities?
Chistoserdova L., Microb Biotechnol 7(1), 2014
PMID: 23945370
Chistoserdova L., Microb Biotechnol 7(1), 2014
PMID: 23945370
Genome sequencing of a single cell of the widely distributed marine subsurface Dehalococcoidia, phylum Chloroflexi.
Wasmund K, Schreiber L, Lloyd KG, Petersen DG, Schramm A, Stepanauskas R, Jørgensen BB, Adrian L., ISME J 8(2), 2014
PMID: 23966099
Wasmund K, Schreiber L, Lloyd KG, Petersen DG, Schramm A, Stepanauskas R, Jørgensen BB, Adrian L., ISME J 8(2), 2014
PMID: 23966099
Genomic properties of Marine Group A bacteria indicate a role in the marine sulfur cycle.
Wright JJ, Mewis K, Hanson NW, Konwar KM, Maas KR, Hallam SJ., ISME J 8(2), 2014
PMID: 24030600
Wright JJ, Mewis K, Hanson NW, Konwar KM, Maas KR, Hallam SJ., ISME J 8(2), 2014
PMID: 24030600
Metagenomic analysis of size-fractionated picoplankton in a marine oxygen minimum zone.
Ganesh S, Parris DJ, DeLong EF, Stewart FJ., ISME J 8(1), 2014
PMID: 24030599
Ganesh S, Parris DJ, DeLong EF, Stewart FJ., ISME J 8(1), 2014
PMID: 24030599
Unveiling abundance and distribution of planktonic Bacteria and Archaea in a polynya in Amundsen Sea, Antarctica.
Kim JG, Park SJ, Quan ZX, Jung MY, Cha IT, Kim SJ, Kim KH, Yang EJ, Kim YN, Lee SH, Rhee SK., Environ Microbiol 16(6), 2014
PMID: 24112809
Kim JG, Park SJ, Quan ZX, Jung MY, Cha IT, Kim SJ, Kim KH, Yang EJ, Kim YN, Lee SH, Rhee SK., Environ Microbiol 16(6), 2014
PMID: 24112809
Single-cell genome and metatranscriptome sequencing reveal metabolic interactions of an alkane-degrading methanogenic community.
Embree M, Nagarajan H, Movahedi N, Chitsaz H, Zengler K., ISME J 8(4), 2014
PMID: 24152715
Embree M, Nagarajan H, Movahedi N, Chitsaz H, Zengler K., ISME J 8(4), 2014
PMID: 24152715
Marine viruses, a genetic reservoir revealed by targeted viromics.
Martínez Martínez J, Swan BK, Wilson WH., ISME J 8(5), 2014
PMID: 24304671
Martínez Martínez J, Swan BK, Wilson WH., ISME J 8(5), 2014
PMID: 24304671
Single-cell genomics reveals metabolic strategies for microbial growth and survival in an oligotrophic aquifer.
Wilkins MJ, Kennedy DW, Castelle CJ, Field EK, Stepanauskas R, Fredrickson JK, Konopka AE., Microbiology 160(pt 2), 2014
PMID: 24324032
Wilkins MJ, Kennedy DW, Castelle CJ, Field EK, Stepanauskas R, Fredrickson JK, Konopka AE., Microbiology 160(pt 2), 2014
PMID: 24324032
Reconstructing each cell's genome within complex microbial communities-dream or reality?
Clingenpeel S, Clum A, Schwientek P, Rinke C, Woyke T., Front Microbiol 5(), 2014
PMID: 25620966
Clingenpeel S, Clum A, Schwientek P, Rinke C, Woyke T., Front Microbiol 5(), 2014
PMID: 25620966
Marine sediments microbes capable of electrode oxidation as a surrogate for lithotrophic insoluble substrate metabolism.
Rowe AR, Chellamuthu P, Lam B, Okamoto A, Nealson KH., Front Microbiol 5(), 2014
PMID: 25642220
Rowe AR, Chellamuthu P, Lam B, Okamoto A, Nealson KH., Front Microbiol 5(), 2014
PMID: 25642220
Metaproteomic analysis of a winter to spring succession in coastal northwest Atlantic Ocean microbial plankton.
Georges AA, El-Swais H, Craig SE, Li WK, Walsh DA., ISME J 8(6), 2014
PMID: 24401863
Georges AA, El-Swais H, Craig SE, Li WK, Walsh DA., ISME J 8(6), 2014
PMID: 24401863
Single-cell enabled comparative genomics of a deep ocean SAR11 bathytype.
Thrash JC, Temperton B, Swan BK, Landry ZC, Woyke T, DeLong EF, Stepanauskas R, Giovannoni SJ., ISME J 8(7), 2014
PMID: 24451205
Thrash JC, Temperton B, Swan BK, Landry ZC, Woyke T, DeLong EF, Stepanauskas R, Giovannoni SJ., ISME J 8(7), 2014
PMID: 24451205
Trimethylamine N-oxide metabolism by abundant marine heterotrophic bacteria.
Lidbury I, Murrell JC, Chen Y., Proc Natl Acad Sci U S A 111(7), 2014
PMID: 24550299
Lidbury I, Murrell JC, Chen Y., Proc Natl Acad Sci U S A 111(7), 2014
PMID: 24550299
Differential contributions of archaeal ammonia oxidizer ecotypes to nitrification in coastal surface waters.
Smith JM, Casciotti KL, Chavez FP, Francis CA., ISME J 8(8), 2014
PMID: 24553472
Smith JM, Casciotti KL, Chavez FP, Francis CA., ISME J 8(8), 2014
PMID: 24553472
Development of a targeted metagenomic approach to study a genomic region involved in light harvesting in marine Synechococcus.
Humily F, Farrant GK, Marie D, Partensky F, Mazard S, Perennou M, Labadie K, Aury JM, Wincker P, Segui AN, Scanlan DJ, Garczarek L., FEMS Microbiol Ecol 88(2), 2014
PMID: 24862161
Humily F, Farrant GK, Marie D, Partensky F, Mazard S, Perennou M, Labadie K, Aury JM, Wincker P, Segui AN, Scanlan DJ, Garczarek L., FEMS Microbiol Ecol 88(2), 2014
PMID: 24862161
Microscale sulfur cycling in the phototrophic pink berry consortia of the Sippewissett Salt Marsh.
Wilbanks EG, Jaekel U, Salman V, Humphrey PT, Eisen JA, Facciotti MT, Buckley DH, Zinder SH, Druschel GK, Fike DA, Orphan VJ., Environ Microbiol 16(11), 2014
PMID: 24428801
Wilbanks EG, Jaekel U, Salman V, Humphrey PT, Eisen JA, Facciotti MT, Buckley DH, Zinder SH, Druschel GK, Fike DA, Orphan VJ., Environ Microbiol 16(11), 2014
PMID: 24428801
Single cell genomic study of Dehalococcoidetes species from deep-sea sediments of the Peruvian Margin.
Kaster AK, Mayer-Blackwell K, Pasarelli B, Spormann AM., ISME J 8(9), 2014
PMID: 24599070
Kaster AK, Mayer-Blackwell K, Pasarelli B, Spormann AM., ISME J 8(9), 2014
PMID: 24599070
A trait based perspective on the biogeography of common and abundant marine bacterioplankton clades.
Brown MV, Ostrowski M, Grzymski JJ, Lauro FM., Mar Genomics 15(), 2014
PMID: 24662471
Brown MV, Ostrowski M, Grzymski JJ, Lauro FM., Mar Genomics 15(), 2014
PMID: 24662471
Function and Evolution of the Sox Multienzyme Complex in the Marine Gammaproteobacterium Congregibacter litoralis.
Spring S., ISRN Microbiol 2014(), 2014
PMID: 25006520
Spring S., ISRN Microbiol 2014(), 2014
PMID: 25006520
Single-cell genomics reveals hundreds of coexisting subpopulations in wild Prochlorococcus.
Kashtan N, Roggensack SE, Rodrigue S, Thompson JW, Biller SJ, Coe A, Ding H, Marttinen P, Malmstrom RR, Stocker R, Follows MJ, Stepanauskas R, Chisholm SW., Science 344(6182), 2014
PMID: 24763590
Kashtan N, Roggensack SE, Rodrigue S, Thompson JW, Biller SJ, Coe A, Ding H, Marttinen P, Malmstrom RR, Stocker R, Follows MJ, Stepanauskas R, Chisholm SW., Science 344(6182), 2014
PMID: 24763590
Obtaining genomes from uncultivated environmental microorganisms using FACS-based single-cell genomics.
Rinke C, Lee J, Nath N, Goudeau D, Thompson B, Poulton N, Dmitrieff E, Malmstrom R, Stepanauskas R, Woyke T., Nat Protoc 9(5), 2014
PMID: 24722403
Rinke C, Lee J, Nath N, Goudeau D, Thompson B, Poulton N, Dmitrieff E, Malmstrom R, Stepanauskas R, Woyke T., Nat Protoc 9(5), 2014
PMID: 24722403
Verrucomicrobia are candidates for polysaccharide-degrading bacterioplankton in an arctic fjord of Svalbard.
Cardman Z, Arnosti C, Durbin A, Ziervogel K, Cox C, Steen AD, Teske A., Appl Environ Microbiol 80(12), 2014
PMID: 24727271
Cardman Z, Arnosti C, Durbin A, Ziervogel K, Cox C, Steen AD, Teske A., Appl Environ Microbiol 80(12), 2014
PMID: 24727271
Marine metaproteomics: deciphering the microbial metabolic food web.
Williams TJ, Cavicchioli R., Trends Microbiol 22(5), 2014
PMID: 24731505
Williams TJ, Cavicchioli R., Trends Microbiol 22(5), 2014
PMID: 24731505
Diversity and genomic insights into the uncultured Chloroflexi from the human microbiota.
Campbell AG, Schwientek P, Vishnivetskaya T, Woyke T, Levy S, Beall CJ, Griffen A, Leys E, Podar M., Environ Microbiol 16(9), 2014
PMID: 24738594
Campbell AG, Schwientek P, Vishnivetskaya T, Woyke T, Levy S, Beall CJ, Griffen A, Leys E, Podar M., Environ Microbiol 16(9), 2014
PMID: 24738594
Genomic and metabolic diversity of Marine Group I Thaumarchaeota in the mesopelagic of two subtropical gyres.
Swan BK, Chaffin MD, Martinez-Garcia M, Morrison HG, Field EK, Poulton NJ, Masland ED, Harris CC, Sczyrba A, Chain PS, Koren S, Woyke T, Stepanauskas R., PLoS One 9(4), 2014
PMID: 24743558
Swan BK, Chaffin MD, Martinez-Garcia M, Morrison HG, Field EK, Poulton NJ, Masland ED, Harris CC, Sczyrba A, Chain PS, Koren S, Woyke T, Stepanauskas R., PLoS One 9(4), 2014
PMID: 24743558
Composition and enzymatic function of particle-associated and free-living bacteria: a coastal/offshore comparison.
D'Ambrosio L, Ziervogel K, MacGregor B, Teske A, Arnosti C., ISME J 8(11), 2014
PMID: 24763371
D'Ambrosio L, Ziervogel K, MacGregor B, Teske A, Arnosti C., ISME J 8(11), 2014
PMID: 24763371
Sulfur oxidation genes in diverse deep-sea viruses.
Anantharaman K, Duhaime MB, Breier JA, Wendt KA, Toner BM, Dick GJ., Science 344(6185), 2014
PMID: 24789974
Anantharaman K, Duhaime MB, Breier JA, Wendt KA, Toner BM, Dick GJ., Science 344(6185), 2014
PMID: 24789974
Depth-dependent geochemical and microbiological gradients in Fe(III) deposits resulting from coal mine-derived acid mine drainage.
Brantner JS, Haake ZJ, Burwick JE, Menge CM, Hotchkiss ST, Senko JM., Front Microbiol 5(), 2014
PMID: 24860562
Brantner JS, Haake ZJ, Burwick JE, Menge CM, Hotchkiss ST, Senko JM., Front Microbiol 5(), 2014
PMID: 24860562
Direct squencing from the minimal number of DNA molecules needed to fill a 454 picotiterplate.
Džunková M, Garcia-Garcerà M, Martínez-Priego L, D'Auria G, Calafell F, Moya A., PLoS One 9(6), 2014
PMID: 24887077
Džunková M, Garcia-Garcerà M, Martínez-Priego L, D'Auria G, Calafell F, Moya A., PLoS One 9(6), 2014
PMID: 24887077
Comparative analysis of deep-sea bacterioplankton OMICS revealed the occurrence of habitat-specific genomic attributes.
Smedile F, Messina E, La Cono V, Yakimov MM., Mar Genomics 17(), 2014
PMID: 24937756
Smedile F, Messina E, La Cono V, Yakimov MM., Mar Genomics 17(), 2014
PMID: 24937756
Unveiling microbial activities along the halocline of Thetis, a deep-sea hypersaline anoxic basin.
Pachiadaki MG, Yakimov MM, LaCono V, Leadbetter E, Edgcomb V., ISME J 8(12), 2014
PMID: 24950109
Pachiadaki MG, Yakimov MM, LaCono V, Leadbetter E, Edgcomb V., ISME J 8(12), 2014
PMID: 24950109
Metaproteomics reveals differential modes of metabolic coupling among ubiquitous oxygen minimum zone microbes.
Hawley AK, Brewer HM, Norbeck AD, Paša-Tolić L, Hallam SJ., Proc Natl Acad Sci U S A 111(31), 2014
PMID: 25053816
Hawley AK, Brewer HM, Norbeck AD, Paša-Tolić L, Hallam SJ., Proc Natl Acad Sci U S A 111(31), 2014
PMID: 25053816
Unveiling viral-host interactions within the 'microbial dark matter'.
Martínez-García M, Santos F, Moreno-Paz M, Parro V, Antón J., Nat Commun 5(), 2014
PMID: 25119473
Martínez-García M, Santos F, Moreno-Paz M, Parro V, Antón J., Nat Commun 5(), 2014
PMID: 25119473
Single-cell genomics reveals potential for magnetite and greigite biomineralization in an uncultivated multicellular magnetotactic prokaryote.
Kolinko S, Richter M, Glöckner FO, Brachmann A, Schüler D., Environ Microbiol Rep 6(5), 2014
PMID: 25079475
Kolinko S, Richter M, Glöckner FO, Brachmann A, Schüler D., Environ Microbiol Rep 6(5), 2014
PMID: 25079475
Ecology and evolution of viruses infecting uncultivated SUP05 bacteria as revealed by single-cell- and meta-genomics.
Roux S, Hawley AK, Torres Beltran M, Scofield M, Schwientek P, Stepanauskas R, Woyke T, Hallam SJ, Sullivan MB., Elife 3(), 2014
PMID: 25171894
Roux S, Hawley AK, Torres Beltran M, Scofield M, Schwientek P, Stepanauskas R, Woyke T, Hallam SJ, Sullivan MB., Elife 3(), 2014
PMID: 25171894
Hidden diversity in honey bee gut symbionts detected by single-cell genomics.
Engel P, Stepanauskas R, Moran NA., PLoS Genet 10(9), 2014
PMID: 25210772
Engel P, Stepanauskas R, Moran NA., PLoS Genet 10(9), 2014
PMID: 25210772
A nonpyrrolysine member of the widely distributed trimethylamine methyltransferase family is a glycine betaine methyltransferase.
Ticak T, Kountz DJ, Girosky KE, Krzycki JA, Ferguson DJ., Proc Natl Acad Sci U S A 111(43), 2014
PMID: 25313086
Ticak T, Kountz DJ, Girosky KE, Krzycki JA, Ferguson DJ., Proc Natl Acad Sci U S A 111(43), 2014
PMID: 25313086
Hidden cycle of dissolved organic carbon in the deep ocean.
Follett CL, Repeta DJ, Rothman DH, Xu L, Santinelli C., Proc Natl Acad Sci U S A 111(47), 2014
PMID: 25385632
Follett CL, Repeta DJ, Rothman DH, Xu L, Santinelli C., Proc Natl Acad Sci U S A 111(47), 2014
PMID: 25385632
Microbial sulfur transformations in sediments from Subglacial Lake Whillans.
Purcell AM, Mikucki JA, Achberger AM, Alekhina IA, Barbante C, Christner BC, Ghosh D, Michaud AB, Mitchell AC, Priscu JC, Scherer R, Skidmore ML, Vick-Majors TJ, The Wissard Science Team., Front Microbiol 5(), 2014
PMID: 25477865
Purcell AM, Mikucki JA, Achberger AM, Alekhina IA, Barbante C, Christner BC, Ghosh D, Michaud AB, Mitchell AC, Priscu JC, Scherer R, Skidmore ML, Vick-Majors TJ, The Wissard Science Team., Front Microbiol 5(), 2014
PMID: 25477865
Heterotrophic bicarbonate assimilation is the main process of de novo organic carbon synthesis in hadal zone of the Hellenic Trench, the deepest part of Mediterranean Sea.
Yakimov MM, La Cono V, Smedile F, Crisafi F, Arcadi E, Leonardi M, Decembrini F, Catalfamo M, Bargiela R, Ferrer M, Golyshin PN, Giuliano L., Environ Microbiol Rep 6(6), 2014
PMID: 25756124
Yakimov MM, La Cono V, Smedile F, Crisafi F, Arcadi E, Leonardi M, Decembrini F, Catalfamo M, Bargiela R, Ferrer M, Golyshin PN, Giuliano L., Environ Microbiol Rep 6(6), 2014
PMID: 25756124
Microbial diversity and community structure across environmental gradients in Bransfield Strait, Western Antarctic Peninsula.
Signori CN, Thomas F, Enrich-Prast A, Pollery RC, Sievert SM., Front Microbiol 5(), 2014
PMID: 25566198
Signori CN, Thomas F, Enrich-Prast A, Pollery RC, Sievert SM., Front Microbiol 5(), 2014
PMID: 25566198
Metabolic potential of a single cell belonging to one of the most abundant lineages in freshwater bacterioplankton.
Garcia SL, McMahon KD, Martinez-Garcia M, Srivastava A, Sczyrba A, Stepanauskas R, Grossart HP, Woyke T, Warnecke F., ISME J 7(1), 2013
PMID: 22810059
Garcia SL, McMahon KD, Martinez-Garcia M, Srivastava A, Sczyrba A, Stepanauskas R, Grossart HP, Woyke T, Warnecke F., ISME J 7(1), 2013
PMID: 22810059
Metagenomic analysis of hadopelagic microbial assemblages thriving at the deepest part of Mediterranean Sea, Matapan-Vavilov Deep.
Smedile F, Messina E, La Cono V, Tsoy O, Monticelli LS, Borghini M, Giuliano L, Golyshin PN, Mushegian A, Yakimov MM., Environ Microbiol 15(1), 2013
PMID: 22827264
Smedile F, Messina E, La Cono V, Tsoy O, Monticelli LS, Borghini M, Giuliano L, Golyshin PN, Mushegian A, Yakimov MM., Environ Microbiol 15(1), 2013
PMID: 22827264
Isolation of an aerobic sulfur oxidizer from the SUP05/Arctic96BD-19 clade.
Marshall KT, Morris RM., ISME J 7(2), 2013
PMID: 22875135
Marshall KT, Morris RM., ISME J 7(2), 2013
PMID: 22875135
Seasonal dominance of CL500-11 bacterioplankton (phylum Chloroflexi) in the oxygenated hypolimnion of Lake Biwa, Japan.
Okazaki Y, Hodoki Y, Nakano S., FEMS Microbiol Ecol 83(1), 2013
PMID: 22809435
Okazaki Y, Hodoki Y, Nakano S., FEMS Microbiol Ecol 83(1), 2013
PMID: 22809435
Oceanographic and biological effects of shoaling of the oxygen minimum zone.
Gilly WF, Beman JM, Litvin SY, Robison BH., Ann Rev Mar Sci 5(), 2013
PMID: 22809177
Gilly WF, Beman JM, Litvin SY, Robison BH., Ann Rev Mar Sci 5(), 2013
PMID: 22809177
Microbial community structure across fluid gradients in the Juan de Fuca Ridge hydrothermal system.
Anderson RE, Beltrán MT, Hallam SJ, Baross JA., FEMS Microbiol Ecol 83(2), 2013
PMID: 22928928
Anderson RE, Beltrán MT, Hallam SJ, Baross JA., FEMS Microbiol Ecol 83(2), 2013
PMID: 22928928
The role of planktonic Flavobacteria in processing algal organic matter in coastal East Antarctica revealed using metagenomics and metaproteomics.
Williams TJ, Wilkins D, Long E, Evans F, DeMaere MZ, Raftery MJ, Cavicchioli R., Environ Microbiol 15(5), 2013
PMID: 23126454
Williams TJ, Wilkins D, Long E, Evans F, DeMaere MZ, Raftery MJ, Cavicchioli R., Environ Microbiol 15(5), 2013
PMID: 23126454
Diversity and population structure of Marine Group A bacteria in the Northeast subarctic Pacific Ocean.
Allers E, Wright JJ, Konwar KM, Howes CG, Beneze E, Hallam SJ, Sullivan MB., ISME J 7(2), 2013
PMID: 23151638
Allers E, Wright JJ, Konwar KM, Howes CG, Beneze E, Hallam SJ, Sullivan MB., ISME J 7(2), 2013
PMID: 23151638
Key microbial drivers in Antarctic aquatic environments.
Wilkins D, Yau S, Williams TJ, Allen MA, Brown MV, DeMaere MZ, Lauro FM, Cavicchioli R., FEMS Microbiol Rev 37(3), 2013
PMID: 23062173
Wilkins D, Yau S, Williams TJ, Allen MA, Brown MV, DeMaere MZ, Lauro FM, Cavicchioli R., FEMS Microbiol Rev 37(3), 2013
PMID: 23062173
Biogeographic partitioning of Southern Ocean microorganisms revealed by metagenomics.
Wilkins D, Lauro FM, Williams TJ, Demaere MZ, Brown MV, Hoffman JM, Andrews-Pfannkoch C, McQuaid JB, Riddle MJ, Rintoul SR, Cavicchioli R., Environ Microbiol 15(5), 2013
PMID: 23199136
Wilkins D, Lauro FM, Williams TJ, Demaere MZ, Brown MV, Hoffman JM, Andrews-Pfannkoch C, McQuaid JB, Riddle MJ, Rintoul SR, Cavicchioli R., Environ Microbiol 15(5), 2013
PMID: 23199136
Evidence for hydrogen oxidation and metabolic plasticity in widespread deep-sea sulfur-oxidizing bacteria.
Anantharaman K, Breier JA, Sheik CS, Dick GJ., Proc Natl Acad Sci U S A 110(1), 2013
PMID: 23263870
Anantharaman K, Breier JA, Sheik CS, Dick GJ., Proc Natl Acad Sci U S A 110(1), 2013
PMID: 23263870
Optofluidic cell selection from complex microbial communities for single-genome analysis.
Landry ZC, Giovanonni SJ, Quake SR, Blainey PC., Methods Enzymol 531(), 2013
PMID: 24060116
Landry ZC, Giovanonni SJ, Quake SR, Blainey PC., Methods Enzymol 531(), 2013
PMID: 24060116
Deoxygenation alters bacterial diversity and community composition in the ocean's largest oxygen minimum zone.
Beman JM, Carolan MT., Nat Commun 4(), 2013
PMID: 24162368
Beman JM, Carolan MT., Nat Commun 4(), 2013
PMID: 24162368
Cell sorting analysis of geographically separated hypersaline environments.
Zhaxybayeva O, Stepanauskas R, Mohan NR, Papke RT., Extremophiles 17(2), 2013
PMID: 23358730
Zhaxybayeva O, Stepanauskas R, Mohan NR, Papke RT., Extremophiles 17(2), 2013
PMID: 23358730
The future is now: single-cell genomics of bacteria and archaea.
Blainey PC., FEMS Microbiol Rev 37(3), 2013
PMID: 23298390
Blainey PC., FEMS Microbiol Rev 37(3), 2013
PMID: 23298390
Abundance and distribution of archaeal acetyl-CoA/propionyl-CoA carboxylase genes indicative for putatively chemoautotrophic Archaea in the tropical Atlantic's interior.
Bergauer K, Sintes E, van Bleijswijk J, Witte H, Herndl GJ., FEMS Microbiol Ecol 84(3), 2013
PMID: 23330917
Bergauer K, Sintes E, van Bleijswijk J, Witte H, Herndl GJ., FEMS Microbiol Ecol 84(3), 2013
PMID: 23330917
Prokaryotic responses to hydrostatic pressure in the ocean--a review.
Tamburini C, Boutrif M, Garel M, Colwell RR, Deming JW., Environ Microbiol 15(5), 2013
PMID: 23419081
Tamburini C, Boutrif M, Garel M, Colwell RR, Deming JW., Environ Microbiol 15(5), 2013
PMID: 23419081
Bacterial community composition in a large marine anoxic basin: a Cariaco Basin time-series survey.
Rodriguez-Mora MJ, Scranton MI, Taylor GT, Chistoserdov AY., FEMS Microbiol Ecol 84(3), 2013
PMID: 23398056
Rodriguez-Mora MJ, Scranton MI, Taylor GT, Chistoserdov AY., FEMS Microbiol Ecol 84(3), 2013
PMID: 23398056
Multiple single-cell genomes provide insight into functions of uncultured Deltaproteobacteria in the human oral cavity.
Campbell AG, Campbell JH, Schwientek P, Woyke T, Sczyrba A, Allman S, Beall CJ, Griffen A, Leys E, Podar M., PLoS One 8(3), 2013
PMID: 23555659
Campbell AG, Campbell JH, Schwientek P, Woyke T, Sczyrba A, Allman S, Beall CJ, Griffen A, Leys E, Podar M., PLoS One 8(3), 2013
PMID: 23555659
Predominant archaea in marine sediments degrade detrital proteins.
Lloyd KG, Schreiber L, Petersen DG, Kjeldsen KU, Lever MA, Steen AD, Stepanauskas R, Richter M, Kleindienst S, Lenk S, Schramm A, Jørgensen BB., Nature 496(7444), 2013
PMID: 23535597
Lloyd KG, Schreiber L, Petersen DG, Kjeldsen KU, Lever MA, Steen AD, Stepanauskas R, Richter M, Kleindienst S, Lenk S, Schramm A, Jørgensen BB., Nature 496(7444), 2013
PMID: 23535597
Spatial patterns of bacterial and archaeal communities along the Romanche Fracture Zone (tropical Atlantic).
Lekunberri I, Sintes E, de Corte D, Yokokawa T, Herndl GJ., FEMS Microbiol Ecol 85(3), 2013
PMID: 23621156
Lekunberri I, Sintes E, de Corte D, Yokokawa T, Herndl GJ., FEMS Microbiol Ecol 85(3), 2013
PMID: 23621156
The microbiology of deep-sea hydrothermal vent plumes: ecological and biogeographic linkages to seafloor and water column habitats.
Dick GJ, Anantharaman K, Baker BJ, Li M, Reed DC, Sheik CS., Front Microbiol 4(), 2013
PMID: 23720658
Dick GJ, Anantharaman K, Baker BJ, Li M, Reed DC, Sheik CS., Front Microbiol 4(), 2013
PMID: 23720658
Determining indicator taxa across spatial and seasonal gradients in the Columbia River coastal margin.
Fortunato CS, Eiler A, Herfort L, Needoba JA, Peterson TD, Crump BC., ISME J 7(10), 2013
PMID: 23719153
Fortunato CS, Eiler A, Herfort L, Needoba JA, Peterson TD, Crump BC., ISME J 7(10), 2013
PMID: 23719153
Genome of a SAR116 bacteriophage shows the prevalence of this phage type in the oceans.
Kang I, Oh HM, Kang D, Cho JC., Proc Natl Acad Sci U S A 110(30), 2013
PMID: 23798439
Kang I, Oh HM, Kang D, Cho JC., Proc Natl Acad Sci U S A 110(30), 2013
PMID: 23798439
Prevalent genome streamlining and latitudinal divergence of planktonic bacteria in the surface ocean.
Swan BK, Tupper B, Sczyrba A, Lauro FM, Martinez-Garcia M, González JM, Luo H, Wright JJ, Landry ZC, Hanson NW, Thompson BP, Poulton NJ, Schwientek P, Acinas SG, Giovannoni SJ, Moran MA, Hallam SJ, Cavicchioli R, Woyke T, Stepanauskas R., Proc Natl Acad Sci U S A 110(28), 2013
PMID: 23801761
Swan BK, Tupper B, Sczyrba A, Lauro FM, Martinez-Garcia M, González JM, Luo H, Wright JJ, Landry ZC, Hanson NW, Thompson BP, Poulton NJ, Schwientek P, Acinas SG, Giovannoni SJ, Moran MA, Hallam SJ, Cavicchioli R, Woyke T, Stepanauskas R., Proc Natl Acad Sci U S A 110(28), 2013
PMID: 23801761
Nitrite oxidation in the upper water column and oxygen minimum zone of the eastern tropical North Pacific Ocean.
Beman JM, Leilei Shih J, Popp BN., ISME J 7(11), 2013
PMID: 23804152
Beman JM, Leilei Shih J, Popp BN., ISME J 7(11), 2013
PMID: 23804152
Phylogenetic diversity and functional gene patterns of sulfur-oxidizing subseafloor Epsilonproteobacteria in diffuse hydrothermal vent fluids.
Akerman NH, Butterfield DA, Huber JA., Front Microbiol 4(), 2013
PMID: 23847608
Akerman NH, Butterfield DA, Huber JA., Front Microbiol 4(), 2013
PMID: 23847608
Sulfur oxidizers dominate carbon fixation at a biogeochemical hot spot in the dark ocean.
Mattes TE, Nunn BL, Marshall KT, Proskurowski G, Kelley DS, Kawka OE, Goodlett DR, Hansell DA, Morris RM., ISME J 7(12), 2013
PMID: 23842654
Mattes TE, Nunn BL, Marshall KT, Proskurowski G, Kelley DS, Kawka OE, Goodlett DR, Hansell DA, Morris RM., ISME J 7(12), 2013
PMID: 23842654
Insights into the phylogeny and coding potential of microbial dark matter.
Rinke C, Schwientek P, Sczyrba A, Ivanova NN, Anderson IJ, Cheng JF, Darling A, Malfatti S, Swan BK, Gies EA, Dodsworth JA, Hedlund BP, Tsiamis G, Sievert SM, Liu WT, Eisen JA, Hallam SJ, Kyrpides NC, Stepanauskas R, Rubin EM, Hugenholtz P, Woyke T., Nature 499(7459), 2013
PMID: 23851394
Rinke C, Schwientek P, Sczyrba A, Ivanova NN, Anderson IJ, Cheng JF, Darling A, Malfatti S, Swan BK, Gies EA, Dodsworth JA, Hedlund BP, Tsiamis G, Sievert SM, Liu WT, Eisen JA, Hallam SJ, Kyrpides NC, Stepanauskas R, Rubin EM, Hugenholtz P, Woyke T., Nature 499(7459), 2013
PMID: 23851394
Microbial control of the dark end of the biological pump.
Herndl GJ, Reinthaler T., Nat Geosci 6(9), 2013
PMID: 24707320
Herndl GJ, Reinthaler T., Nat Geosci 6(9), 2013
PMID: 24707320
Lineage specific gene family enrichment at the microscale in marine systems.
Allen AE, Allen LZ, McCrow JP., Curr Opin Microbiol 16(5), 2013
PMID: 24377115
Allen AE, Allen LZ, McCrow JP., Curr Opin Microbiol 16(5), 2013
PMID: 24377115
Microbial diversity in the era of omic technologies.
Nikolaki S, Tsiamis G., Biomed Res Int 2013(), 2013
PMID: 24260747
Nikolaki S, Tsiamis G., Biomed Res Int 2013(), 2013
PMID: 24260747
Analysis of composition and structure of coastal to mesopelagic bacterioplankton communities in the northern gulf of Mexico.
King GM, Smith CB, Tolar B, Hollibaugh JT., Front Microbiol 3(), 2012
PMID: 23346078
King GM, Smith CB, Tolar B, Hollibaugh JT., Front Microbiol 3(), 2012
PMID: 23346078
Seasonality in ocean microbial communities.
Giovannoni SJ, Vergin KL., Science 335(6069), 2012
PMID: 22323811
Giovannoni SJ, Vergin KL., Science 335(6069), 2012
PMID: 22323811
Microbial functioning and community structure variability in the mesopelagic and epipelagic waters of the subtropical northeast atlantic ocean.
Baltar F, Arístegui J, Gasol JM, Herndl GJ., Appl Environ Microbiol 78(9), 2012
PMID: 22344670
Baltar F, Arístegui J, Gasol JM, Herndl GJ., Appl Environ Microbiol 78(9), 2012
PMID: 22344670
IBD-what role do Proteobacteria play?
Mukhopadhya I, Hansen R, El-Omar EM, Hold GL., Nat Rev Gastroenterol Hepatol 9(4), 2012
PMID: 22349170
Mukhopadhya I, Hansen R, El-Omar EM, Hold GL., Nat Rev Gastroenterol Hepatol 9(4), 2012
PMID: 22349170
Community analysis of high- and low-nucleic acid-containing bacteria in NW Mediterranean coastal waters using 16S rDNA pyrosequencing.
Vila-Costa M, Gasol JM, Sharma S, Moran MA., Environ Microbiol 14(6), 2012
PMID: 22390635
Vila-Costa M, Gasol JM, Sharma S, Moran MA., Environ Microbiol 14(6), 2012
PMID: 22390635
Ecological structuring of bacterial and archaeal taxa in surface ocean waters.
Yilmaz P, Iversen MH, Hankeln W, Kottmann R, Quast C, Glöckner FO., FEMS Microbiol Ecol 81(2), 2012
PMID: 22416918
Yilmaz P, Iversen MH, Hankeln W, Kottmann R, Quast C, Glöckner FO., FEMS Microbiol Ecol 81(2), 2012
PMID: 22416918
Capturing single cell genomes of active polysaccharide degraders: an unexpected contribution of Verrucomicrobia.
Martinez-Garcia M, Brazel DM, Swan BK, Arnosti C, Chain PS, Reitenga KG, Xie G, Poulton NJ, Lluesma Gomez M, Masland DE, Thompson B, Bellows WK, Ziervogel K, Lo CC, Ahmed S, Gleasner CD, Detter CJ, Stepanauskas R., PLoS One 7(4), 2012
PMID: 22536372
Martinez-Garcia M, Brazel DM, Swan BK, Arnosti C, Chain PS, Reitenga KG, Xie G, Poulton NJ, Lluesma Gomez M, Masland DE, Thompson B, Bellows WK, Ziervogel K, Lo CC, Ahmed S, Gleasner CD, Detter CJ, Stepanauskas R., PLoS One 7(4), 2012
PMID: 22536372
A metaproteomic assessment of winter and summer bacterioplankton from Antarctic Peninsula coastal surface waters.
Williams TJ, Long E, Evans F, Demaere MZ, Lauro FM, Raftery MJ, Ducklow H, Grzymski JJ, Murray AE, Cavicchioli R., ISME J 6(10), 2012
PMID: 22534610
Williams TJ, Long E, Evans F, Demaere MZ, Lauro FM, Raftery MJ, Ducklow H, Grzymski JJ, Murray AE, Cavicchioli R., ISME J 6(10), 2012
PMID: 22534610
A metagenomic assessment of winter and summer bacterioplankton from Antarctica Peninsula coastal surface waters.
Grzymski JJ, Riesenfeld CS, Williams TJ, Dussaq AM, Ducklow H, Erickson M, Cavicchioli R, Murray AE., ISME J 6(10), 2012
PMID: 22534611
Grzymski JJ, Riesenfeld CS, Williams TJ, Dussaq AM, Ducklow H, Erickson M, Cavicchioli R, Murray AE., ISME J 6(10), 2012
PMID: 22534611
Microbial ecology of expanding oxygen minimum zones.
Wright JJ, Konwar KM, Hallam SJ., Nat Rev Microbiol 10(6), 2012
PMID: 22580367
Wright JJ, Konwar KM, Hallam SJ., Nat Rev Microbiol 10(6), 2012
PMID: 22580367
The metatranscriptome of a deep-sea hydrothermal plume is dominated by water column methanotrophs and lithotrophs.
Lesniewski RA, Jain S, Anantharaman K, Schloss PD, Dick GJ., ISME J 6(12), 2012
PMID: 22695860
Lesniewski RA, Jain S, Anantharaman K, Schloss PD, Dick GJ., ISME J 6(12), 2012
PMID: 22695860
High diversity of microplankton surrounds deep-water coral reef in the Norwegian Sea.
Jensen S, Bourne DG, Hovland M, Murrell JC., FEMS Microbiol Ecol 82(1), 2012
PMID: 22571287
Jensen S, Bourne DG, Hovland M, Murrell JC., FEMS Microbiol Ecol 82(1), 2012
PMID: 22571287
Genomic sequencing of uncultured microorganisms from single cells.
Lasken RS., Nat Rev Microbiol 10(9), 2012
PMID: 22890147
Lasken RS., Nat Rev Microbiol 10(9), 2012
PMID: 22890147
Grappling with Proteus: population level approaches to understanding microbial diversity.
Choudoir MJ, Campbell AN, Buckley DH., Front Microbiol 3(), 2012
PMID: 23024645
Choudoir MJ, Campbell AN, Buckley DH., Front Microbiol 3(), 2012
PMID: 23024645
Single cell genomics: an individual look at microbes.
Stepanauskas R., Curr Opin Microbiol 15(5), 2012
PMID: 23026140
Stepanauskas R., Curr Opin Microbiol 15(5), 2012
PMID: 23026140
Ubiquitous dissolved inorganic carbon assimilation by marine bacteria in the Pacific Northwest coastal ocean as determined by stable isotope probing.
DeLorenzo S, Bräuer SL, Edgmont CA, Herfort L, Tebo BM, Zuber P., PLoS One 7(10), 2012
PMID: 23056406
DeLorenzo S, Bräuer SL, Edgmont CA, Herfort L, Tebo BM, Zuber P., PLoS One 7(10), 2012
PMID: 23056406
New abundant microbial groups in aquatic hypersaline environments.
Ghai R, Pašić L, Fernández AB, Martin-Cuadrado AB, Mizuno CM, McMahon KD, Papke RT, Stepanauskas R, Rodriguez-Brito B, Rohwer F, Sánchez-Porro C, Ventosa A, Rodríguez-Valera F., Sci Rep 1(), 2011
PMID: 22355652
Ghai R, Pašić L, Fernández AB, Martin-Cuadrado AB, Mizuno CM, McMahon KD, Papke RT, Stepanauskas R, Rodriguez-Brito B, Rohwer F, Sánchez-Porro C, Ventosa A, Rodríguez-Valera F., Sci Rep 1(), 2011
PMID: 22355652
32 References
Daten bereitgestellt von Europe PubMed Central.
Metagenome of a versatile chemolithoautotroph from expanding oceanic dead zones.
Walsh DA, Zaikova E, Howes CG, Song YC, Wright JJ, Tringe SG, Tortell PD, Hallam SJ., Science 326(5952), 2009
PMID: 19900896
Walsh DA, Zaikova E, Howes CG, Song YC, Wright JJ, Tringe SG, Tortell PD, Hallam SJ., Science 326(5952), 2009
PMID: 19900896
AUTHOR UNKNOWN, LIMNOL OCEANOGR 46(), 2001
A cryptic sulfur cycle in oxygen-minimum-zone waters off the Chilean coast.
Canfield DE, Stewart FJ, Thamdrup B, De Brabandere L, Dalsgaard T, Delong EF, Revsbech NP, Ulloa O., Science 330(6009), 2010
PMID: 21071631
Canfield DE, Stewart FJ, Thamdrup B, De Brabandere L, Dalsgaard T, Delong EF, Revsbech NP, Ulloa O., Science 330(6009), 2010
PMID: 21071631
AUTHOR UNKNOWN, Nature 309(5963), 1984
AUTHOR UNKNOWN, DEEP SEA RES PART II TOP STUD OCEANOGR 57(), 2010
Contribution of Archaea to total prokaryotic production in the deep Atlantic Ocean.
Herndl GJ, Reinthaler T, Teira E, van Aken H, Veth C, Pernthaler A, Pernthaler J., Appl. Environ. Microbiol. 71(5), 2005
PMID: 15870315
Herndl GJ, Reinthaler T, Teira E, van Aken H, Veth C, Pernthaler A, Pernthaler J., Appl. Environ. Microbiol. 71(5), 2005
PMID: 15870315
A 3-hydroxypropionate/4-hydroxybutyrate autotrophic carbon dioxide assimilation pathway in Archaea.
Berg IA, Kockelkorn D, Buckel W, Fuchs G., Science 318(5857), 2007
PMID: 18079405
Berg IA, Kockelkorn D, Buckel W, Fuchs G., Science 318(5857), 2007
PMID: 18079405
Archaeal nitrification in the ocean.
Wuchter C, Abbas B, Coolen MJ, Herfort L, van Bleijswijk J, Timmers P, Strous M, Teira E, Herndl GJ, Middelburg JJ, Schouten S, Sinninghe Damste JS., Proc. Natl. Acad. Sci. U.S.A. 103(33), 2006
PMID: 16894176
Wuchter C, Abbas B, Coolen MJ, Herfort L, van Bleijswijk J, Timmers P, Strous M, Teira E, Herndl GJ, Middelburg JJ, Schouten S, Sinninghe Damste JS., Proc. Natl. Acad. Sci. U.S.A. 103(33), 2006
PMID: 16894176
Major gradients in putatively nitrifying and non-nitrifying Archaea in the deep North Atlantic.
Agogue H, Brink M, Dinasquet J, Herndl GJ., Nature 456(7223), 2008
PMID: 19037244
Agogue H, Brink M, Dinasquet J, Herndl GJ., Nature 456(7223), 2008
PMID: 19037244
Contribution of Crenarchaeota and Bacteria to autotrophy in the North Atlantic interior.
Varela MM, van Aken HM, Sintes E, Reinthaler T, Herndl GJ., Environ. Microbiol. 13(6), 2011
PMID: 21418496
Varela MM, van Aken HM, Sintes E, Reinthaler T, Herndl GJ., Environ. Microbiol. 13(6), 2011
PMID: 21418496
Dissecting biological "dark matter" with single-cell genetic analysis of rare and uncultivated TM7 microbes from the human mouth.
Marcy Y, Ouverney C, Bik EM, Losekann T, Ivanova N, Martin HG, Szeto E, Platt D, Hugenholtz P, Relman DA, Quake SR., Proc. Natl. Acad. Sci. U.S.A. 104(29), 2007
PMID: 17620602
Marcy Y, Ouverney C, Bik EM, Losekann T, Ivanova N, Martin HG, Szeto E, Platt D, Hugenholtz P, Relman DA, Quake SR., Proc. Natl. Acad. Sci. U.S.A. 104(29), 2007
PMID: 17620602
Genomic DNA amplification from a single bacterium.
Raghunathan A, Ferguson HR Jr, Bornarth CJ, Song W, Driscoll M, Lasken RS., Appl. Environ. Microbiol. 71(6), 2005
PMID: 15933038
Raghunathan A, Ferguson HR Jr, Bornarth CJ, Song W, Driscoll M, Lasken RS., Appl. Environ. Microbiol. 71(6), 2005
PMID: 15933038
Matching phylogeny and metabolism in the uncultured marine bacteria, one cell at a time.
Stepanauskas R, Sieracki ME., Proc. Natl. Acad. Sci. U.S.A. 104(21), 2007
PMID: 17502618
Stepanauskas R, Sieracki ME., Proc. Natl. Acad. Sci. U.S.A. 104(21), 2007
PMID: 17502618
Sequencing genomes from single cells by polymerase cloning.
Zhang K, Martiny AC, Reppas NB, Barry KW, Malek J, Chisholm SW, Church GM., Nat. Biotechnol. 24(6), 2006
PMID: 16732271
Zhang K, Martiny AC, Reppas NB, Barry KW, Malek J, Chisholm SW, Church GM., Nat. Biotechnol. 24(6), 2006
PMID: 16732271
Assembling the marine metagenome, one cell at a time.
Woyke T, Xie G, Copeland A, Gonzalez JM, Han C, Kiss H, Saw JH, Senin P, Yang C, Chatterji S, Cheng JF, Eisen JA, Sieracki ME, Stepanauskas R., PLoS ONE 4(4), 2009
PMID: 19390573
Woyke T, Xie G, Copeland A, Gonzalez JM, Han C, Kiss H, Saw JH, Senin P, Yang C, Chatterji S, Cheng JF, Eisen JA, Sieracki ME, Stepanauskas R., PLoS ONE 4(4), 2009
PMID: 19390573
Community genomics among stratified microbial assemblages in the ocean's interior.
DeLong EF, Preston CM, Mincer T, Rich V, Hallam SJ, Frigaard NU, Martinez A, Sullivan MB, Edwards R, Brito BR, Chisholm SW, Karl DM., Science 311(5760), 2006
PMID: 16439655
DeLong EF, Preston CM, Mincer T, Rich V, Hallam SJ, Frigaard NU, Martinez A, Sullivan MB, Edwards R, Brito BR, Chisholm SW, Karl DM., Science 311(5760), 2006
PMID: 16439655
Phylogenetic analyses of ribosomal DNA-containing bacterioplankton genome fragments from a 4000 m vertical profile in the North Pacific Subtropical Gyre.
Pham VD, Konstantinidis KT, Palden T, DeLong EF., Environ. Microbiol. 10(9), 2008
PMID: 18494796
Pham VD, Konstantinidis KT, Palden T, DeLong EF., Environ. Microbiol. 10(9), 2008
PMID: 18494796
AUTHOR UNKNOWN, LIMNOL OCEANOGR 54(), 2009
Phylogenetic screening of ribosomal RNA gene-containing clones in Bacterial Artificial Chromosome (BAC) libraries from different depths in Monterey Bay.
Suzuki MT, Preston CM, Beja O, de la Torre JR, Steward GF, DeLong EF., Microb. Ecol. 48(4), 2004
PMID: 15696381
Suzuki MT, Preston CM, Beja O, de la Torre JR, Steward GF, DeLong EF., Microb. Ecol. 48(4), 2004
PMID: 15696381
A ribulose-1,5-bisphosphate carboxylase/oxygenase (RubisCO)-like protein from Chlorobium tepidum that is involved with sulfur metabolism and the response to oxidative stress.
Hanson TE, Tabita FR., Proc. Natl. Acad. Sci. U.S.A. 98(8), 2001
PMID: 11287671
Hanson TE, Tabita FR., Proc. Natl. Acad. Sci. U.S.A. 98(8), 2001
PMID: 11287671
Metabolic streamlining in an open-ocean nitrogen-fixing cyanobacterium.
Tripp HJ, Bench SR, Turk KA, Foster RA, Desany BA, Niazi F, Affourtit JP, Zehr JP., Nature 464(7285), 2010
PMID: 20173737
Tripp HJ, Bench SR, Turk KA, Foster RA, Desany BA, Niazi F, Affourtit JP, Zehr JP., Nature 464(7285), 2010
PMID: 20173737
Genome streamlining in a cosmopolitan oceanic bacterium.
Giovannoni SJ, Tripp HJ, Givan S, Podar M, Vergin KL, Baptista D, Bibbs L, Eads J, Richardson TH, Noordewier M, Rappe MS, Short JM, Carrington JC, Mathur EJ., Science 309(5738), 2005
PMID: 16109880
Giovannoni SJ, Tripp HJ, Givan S, Podar M, Vergin KL, Baptista D, Bibbs L, Eads J, Richardson TH, Noordewier M, Rappe MS, Short JM, Carrington JC, Mathur EJ., Science 309(5738), 2005
PMID: 16109880
AUTHOR UNKNOWN, DEEP SEA RES PART I OCEANOGR RES PAP 42(), 1995
Metatranscriptomics reveals unique microbial small RNAs in the ocean's water column.
Shi Y, Tyson GW, DeLong EF., Nature 459(7244), 2009
PMID: 19444216
Shi Y, Tyson GW, DeLong EF., Nature 459(7244), 2009
PMID: 19444216
The novel genes, cbbQ and cbbO, located downstream from the RubisCO genes of Pseudomonas hydrogenothermophila, affect the conformational states and activity of RubisCO.
Hayashi NR, Arai H, Kodama T, Igarashi Y., Biochem. Biophys. Res. Commun. 241(2), 1997
PMID: 9425311
Hayashi NR, Arai H, Kodama T, Igarashi Y., Biochem. Biophys. Res. Commun. 241(2), 1997
PMID: 9425311
Time-series analyses of Monterey Bay coastal microbial picoplankton using a 'genome proxy' microarray.
Rich VI, Pham VD, Eppley J, Shi Y, DeLong EF., Environ. Microbiol. 13(1), 2011
PMID: 20695878
Rich VI, Pham VD, Eppley J, Shi Y, DeLong EF., Environ. Microbiol. 13(1), 2011
PMID: 20695878
Molecular analysis of the diversity of sulfate-reducing and sulfur-oxidizing prokaryotes in the environment, using aprA as functional marker gene.
Meyer B, Kuever J., Appl. Environ. Microbiol. 73(23), 2007
PMID: 17921272
Meyer B, Kuever J., Appl. Environ. Microbiol. 73(23), 2007
PMID: 17921272
AUTHOR UNKNOWN, LIMNOL OCEANOGR 46(), 2001
AUTHOR UNKNOWN, Mar. Ecol. Prog. Ser. 96(), 1993
Rapid chemotactic response enables marine bacteria to exploit ephemeral microscale nutrient patches.
Stocker R, Seymour JR, Samadani A, Hunt DE, Polz MF., Proc. Natl. Acad. Sci. U.S.A. 105(11), 2008
PMID: 18337491
Stocker R, Seymour JR, Samadani A, Hunt DE, Polz MF., Proc. Natl. Acad. Sci. U.S.A. 105(11), 2008
PMID: 18337491
AUTHOR UNKNOWN, LIMNOL OCEANOGR 38(), 1993
Export
Markieren/ Markierung löschen
Markierte Publikationen
Web of Science
Dieser Datensatz im Web of Science®Quellen
PMID: 21885783
PubMed | Europe PMC
Suchen in