AGenDA: homology-based gene prediction

Taher L, Rinner O, Garg S, Sczyrba A, Brudno M, Batzoglou S, Morgenstern B (2003)
BIOINFORMATICS 19(12): 1575-1577.

Zeitschriftenaufsatz | Veröffentlicht | Englisch
 
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Autor/in
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Abstract / Bemerkung
We present a www server for homology-based gene prediction. The user enters a pair of evolutionary related genomic sequences, for example from human and mouse. Our software system uses CHAOS and DIALIGN to calculate an alignment of the input sequences and then searches for conserved splicing signals and start/stop codons around regions of local sequence similarity. This way, candidate exons are identified that are used, in turn, to calculate optimal gene models. The server returns the constructed gene model by email, together with a graphical representation of the underlying genomic alignment.
Erscheinungsjahr
2003
Zeitschriftentitel
BIOINFORMATICS
Band
19
Ausgabe
12
Seite(n)
1575-1577
ISSN
1367-4803
eISSN
1460-2059
Page URI
https://pub.uni-bielefeld.de/record/1610494

Zitieren

Taher L, Rinner O, Garg S, et al. AGenDA: homology-based gene prediction. BIOINFORMATICS. 2003;19(12):1575-1577.
Taher, L., Rinner, O., Garg, S., Sczyrba, A., Brudno, M., Batzoglou, S., & Morgenstern, B. (2003). AGenDA: homology-based gene prediction. BIOINFORMATICS, 19(12), 1575-1577. doi:10.1093/bioinformatics/btg181
Taher, L., Rinner, O., Garg, S., Sczyrba, A., Brudno, M., Batzoglou, S., and Morgenstern, B. (2003). AGenDA: homology-based gene prediction. BIOINFORMATICS 19, 1575-1577.
Taher, L., et al., 2003. AGenDA: homology-based gene prediction. BIOINFORMATICS, 19(12), p 1575-1577.
L. Taher, et al., “AGenDA: homology-based gene prediction”, BIOINFORMATICS, vol. 19, 2003, pp. 1575-1577.
Taher, L., Rinner, O., Garg, S., Sczyrba, A., Brudno, M., Batzoglou, S., Morgenstern, B.: AGenDA: homology-based gene prediction. BIOINFORMATICS. 19, 1575-1577 (2003).
Taher, L, Rinner, O, Garg, S, Sczyrba, Alexander, Brudno, M, Batzoglou, S, and Morgenstern, B. “AGenDA: homology-based gene prediction”. BIOINFORMATICS 19.12 (2003): 1575-1577.

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PMID: 12912840
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