XenDB: Full length cDNA prediction and cross species mapping in Xenopus laevis
Sczyrba A, Beckstette M, Brivanlou AH, Giegerich R, Altmann CR (2005)
BMC Genomics 6(1): 123.
Zeitschriftenaufsatz
| Veröffentlicht | Englisch
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Autor*in
Sczyrba, AlexanderUniBi 
;
Beckstette, MichaelUniBi;
Brivanlou, Ali H.;
Giegerich, RobertUniBi;
Altmann, Curtis R.
;
Beckstette, MichaelUniBi;
Brivanlou, Ali H.;
Giegerich, RobertUniBi;
Altmann, Curtis R.Einrichtung
Technische Fakultät > Computational Metagenomics
Technische Fakultät > AG Genominformatik
Technische Fakultät > AG Praktische Informatik
Technische Fakultät > BIBI
Centrum für Biotechnologie > Institut für Bioinformatik
Centrum für Biotechnologie > Arbeitsgruppe R. Giegerich
Centrum für Biotechnologie > Arbeitsgruppe A. Sczyrba
Technische Fakultät > AG Genominformatik
Technische Fakultät > AG Praktische Informatik
Technische Fakultät > BIBI
Centrum für Biotechnologie > Institut für Bioinformatik
Centrum für Biotechnologie > Arbeitsgruppe R. Giegerich
Centrum für Biotechnologie > Arbeitsgruppe A. Sczyrba
Abstract / Bemerkung
Background: Research using the model system Xenopus laevis has provided critical insights into the mechanisms of early vertebrate development and cell biology. Large scale sequencing efforts have provided an increasingly important resource for researchers. To provide full advantage of the available sequence, we have analyzed 350,468 Xenopus laevis Expressed Sequence Tags (ESTs) both to identify full length protein encoding sequences and to develop a unique database system to support comparative approaches between X. laevis and other model systems. Description: Using a suffix array based clustering approach, we have identified 25,971 clusters and 40,877 singleton sequences. Generation of a consensus sequence for each cluster resulted in 31,353 tentative contig and 4,801 singleton sequences. Using both BLASTX and FASTY comparison to five model organisms and the NR protein database, more than 15,000 sequences are predicted to encode full length proteins and these have been matched to publicly available IMAGE clones when available. Each sequence has been compared to the KOG database and ~67% of the sequences have been assigned a putative functional category. Based on sequence homology to mouse and human, putative GO annotations have been determined. Conclusion: The results of the analysis have been stored in a publicly available database XenDB http://bibiserv.techfak.uni-bielefeld.de/xendb/. A unique capability of the database is the ability to batch upload cross species queries to identify potential Xenopus homologues and their associated full length clones. Examples are provided including mapping of microarray results and application of 'in silico' analysis. The ability to quickly translate the results of various species into 'Xenopus-centric' information should greatly enhance comparative embryological approaches. Supplementary material can be found at http://bibiserv.techfak.uni-bielefeld.de/xendb/.
Erscheinungsjahr
2005
Zeitschriftentitel
BMC Genomics
Band
6
Ausgabe
1
Art.-Nr.
123
ISSN
1471-2164
Page URI
https://pub.uni-bielefeld.de/record/1773613
Zitieren
Sczyrba A, Beckstette M, Brivanlou AH, Giegerich R, Altmann CR. XenDB: Full length cDNA prediction and cross species mapping in Xenopus laevis. BMC Genomics. 2005;6(1): 123.
Sczyrba, A., Beckstette, M., Brivanlou, A. H., Giegerich, R., & Altmann, C. R. (2005). XenDB: Full length cDNA prediction and cross species mapping in Xenopus laevis. BMC Genomics, 6(1), 123. https://doi.org/10.1186/1471-2164-6-123
Sczyrba, Alexander, Beckstette, Michael, Brivanlou, Ali H., Giegerich, Robert, and Altmann, Curtis R. 2005. “XenDB: Full length cDNA prediction and cross species mapping in Xenopus laevis”. BMC Genomics 6 (1): 123.
Sczyrba, A., Beckstette, M., Brivanlou, A. H., Giegerich, R., and Altmann, C. R. (2005). XenDB: Full length cDNA prediction and cross species mapping in Xenopus laevis. BMC Genomics 6:123.
Sczyrba, A., et al., 2005. XenDB: Full length cDNA prediction and cross species mapping in Xenopus laevis. BMC Genomics, 6(1): 123.
A. Sczyrba, et al., “XenDB: Full length cDNA prediction and cross species mapping in Xenopus laevis”, BMC Genomics, vol. 6, 2005, : 123.
Sczyrba, A., Beckstette, M., Brivanlou, A.H., Giegerich, R., Altmann, C.R.: XenDB: Full length cDNA prediction and cross species mapping in Xenopus laevis. BMC Genomics. 6, : 123 (2005).
Sczyrba, Alexander, Beckstette, Michael, Brivanlou, Ali H., Giegerich, Robert, and Altmann, Curtis R. “XenDB: Full length cDNA prediction and cross species mapping in Xenopus laevis”. BMC Genomics 6.1 (2005): 123.
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Daten bereitgestellt von European Bioinformatics Institute (EBI)
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Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes.
Krogh A, Larsson B, von Heijne G, Sonnhammer EL., J. Mol. Biol. 305(3), 2001
PMID: 11152613
Krogh A, Larsson B, von Heijne G, Sonnhammer EL., J. Mol. Biol. 305(3), 2001
PMID: 11152613
A hidden Markov model for predicting transmembrane helices in protein sequences.
Sonnhammer EL, von Heijne G, Krogh A., Proc Int Conf Intell Syst Mol Biol 6(), 1998
PMID: 9783223
Sonnhammer EL, von Heijne G, Krogh A., Proc Int Conf Intell Syst Mol Biol 6(), 1998
PMID: 9783223
SAGEmap: a public gene expression resource.
Lash AE, Tolstoshev CM, Wagner L, Schuler GD, Strausberg RL, Riggins GJ, Altschul SF., Genome Res. 10(7), 2000
PMID: 10899154
Lash AE, Tolstoshev CM, Wagner L, Schuler GD, Strausberg RL, Riggins GJ, Altschul SF., Genome Res. 10(7), 2000
PMID: 10899154
The cancer genome anatomy project: online resources to reveal the molecular signatures of cancer.
Strausberg RL, Buetow KH, Greenhut SF, Grouse LH, Schaefer CF., Cancer Invest. 20(7-8), 2002
PMID: 12449737
Strausberg RL, Buetow KH, Greenhut SF, Grouse LH, Schaefer CF., Cancer Invest. 20(7-8), 2002
PMID: 12449737
Homeodomain proteins.
Gehring WJ, Affolter M, Burglin T., Annu. Rev. Biochem. 63(), 1994
PMID: 7979246
Gehring WJ, Affolter M, Burglin T., Annu. Rev. Biochem. 63(), 1994
PMID: 7979246
Caudalization of neural fate by tissue recombination and bFGF.
Cox WG, Hemmati-Brivanlou A., Development 121(12), 1995
PMID: 8575335
Cox WG, Hemmati-Brivanlou A., Development 121(12), 1995
PMID: 8575335
The Xenopus XIHbox 6 homeo protein, a marker of posterior neural induction, is expressed in proliferating neurons.
Wright CV, Morita EA, Wilkin DJ, De Robertis EM., Development 109(1), 1990
PMID: 1976504
Wright CV, Morita EA, Wilkin DJ, De Robertis EM., Development 109(1), 1990
PMID: 1976504
Regulation of Hox gene expression and posterior development by the Xenopus caudal homologue Xcad3.
Isaacs HV, Pownall ME, Slack JM., EMBO J. 17(12), 1998
PMID: 9628877
Isaacs HV, Pownall ME, Slack JM., EMBO J. 17(12), 1998
PMID: 9628877
JGI Xenopustropicalis Web Site
AUTHOR UNKNOWN, 2005
AUTHOR UNKNOWN, 2005
Cancer Genome Anatomy Project
AUTHOR UNKNOWN, 2005
AUTHOR UNKNOWN, 2005
Serial analysis of gene expression.
Velculescu VE, Zhang L, Vogelstein B, Kinzler KW., Science 270(5235), 1995
PMID: 7570003
Velculescu VE, Zhang L, Vogelstein B, Kinzler KW., Science 270(5235), 1995
PMID: 7570003
An anatomy of normal and malignant gene expression.
Boon K, Osorio EC, Greenhut SF, Schaefer CF, Shoemaker J, Polyak K, Morin PJ, Buetow KH, Strausberg RL, De Souza SJ, Riggins GJ., Proc. Natl. Acad. Sci. U.S.A. 99(17), 2002
PMID: 12119410
Boon K, Osorio EC, Greenhut SF, Schaefer CF, Shoemaker J, Polyak K, Morin PJ, Buetow KH, Strausberg RL, De Souza SJ, Riggins GJ., Proc. Natl. Acad. Sci. U.S.A. 99(17), 2002
PMID: 12119410
A public database for gene expression in human cancers.
Lal A, Lash AE, Altschul SF, Velculescu V, Zhang L, McLendon RE, Marra MA, Prange C, Morin PJ, Polyak K, Papadopoulos N, Vogelstein B, Kinzler KW, Strausberg RL, Riggins GJ., Cancer Res. 59(21), 1999
PMID: 10554005
Lal A, Lash AE, Altschul SF, Velculescu V, Zhang L, McLendon RE, Marra MA, Prange C, Morin PJ, Polyak K, Papadopoulos N, Vogelstein B, Kinzler KW, Strausberg RL, Riggins GJ., Cancer Res. 59(21), 1999
PMID: 10554005
Sox10, a novel transcriptional modulator in glial cells.
Kuhlbrodt K, Herbarth B, Sock E, Hermans-Borgmeyer I, Wegner M., J. Neurosci. 18(1), 1998
PMID: 9412504
Kuhlbrodt K, Herbarth B, Sock E, Hermans-Borgmeyer I, Wegner M., J. Neurosci. 18(1), 1998
PMID: 9412504
Intermediate filament proteins define different glial subpopulations.
Yoshida M., J. Neurosci. Res. 63(3), 2001
PMID: 11170178
Yoshida M., J. Neurosci. Res. 63(3), 2001
PMID: 11170178
Glial-defined rhombomere boundaries in developing Xenopus hindbrain.
Yoshida M, Colman DR., J. Comp. Neurol. 424(1), 2000
PMID: 10888738
Yoshida M, Colman DR., J. Comp. Neurol. 424(1), 2000
PMID: 10888738
The role of notch in promoting glial and neural stem cell fates.
Gaiano N, Fishell G., Annu. Rev. Neurosci. 25(), 2002
PMID: 12052917
Gaiano N, Fishell G., Annu. Rev. Neurosci. 25(), 2002
PMID: 12052917
Reliability of gene expression ratios for cDNA microarrays in multiconditional experiments with a reference design.
Konig R, Baldessari D, Pollet N, Niehrs C, Eils R., Nucleic Acids Res. 32(3), 2004
PMID: 14966261
Konig R, Baldessari D, Pollet N, Niehrs C, Eils R., Nucleic Acids Res. 32(3), 2004
PMID: 14966261
Exposure to the herbicide acetochlor alters thyroid hormone-dependent gene expression and metamorphosis in Xenopus Laevis.
Crump D, Werry K, Veldhoen N, Van Aggelen G, Helbing CC., Environ. Health Perspect. 110(12), 2002
PMID: 12460798
Crump D, Werry K, Veldhoen N, Van Aggelen G, Helbing CC., Environ. Health Perspect. 110(12), 2002
PMID: 12460798
Gene profiling during neural induction in Xenopus laevis: regulation of BMP signaling by post-transcriptional mechanisms and TAB3, a novel TAK1-binding protein.
Munoz-Sanjuan I, Bell E, Altmann CR, Vonica A, Brivanlou AH., Development 129(23), 2002
PMID: 12403722
Munoz-Sanjuan I, Bell E, Altmann CR, Vonica A, Brivanlou AH., Development 129(23), 2002
PMID: 12403722
Microarray optimizations: increasing spot accuracy and automated identification of true microarray signals.
Tran PH, Peiffer DA, Shin Y, Meek LM, Brody JP, Cho KW., Nucleic Acids Res. 30(12), 2002
PMID: 12060692
Tran PH, Peiffer DA, Shin Y, Meek LM, Brody JP, Cho KW., Nucleic Acids Res. 30(12), 2002
PMID: 12060692
Microarray-based analysis of early development in Xenopus laevis.
Altmann CR, Bell E, Sczyrba A, Pun J, Bekiranov S, Gaasterland T, Brivanlou AH., Dev. Biol. 236(1), 2001
PMID: 11456444
Altmann CR, Bell E, Sczyrba A, Pun J, Bekiranov S, Gaasterland T, Brivanlou AH., Dev. Biol. 236(1), 2001
PMID: 11456444
Global analysis of RAR-responsive genes in the Xenopus neurula using cDNA microarrays.
Arima K, Shiotsugu J, Niu R, Khandpur R, Martinez M, Shin Y, Koide T, Cho KW, Kitayama A, Ueno N, Chandraratna RA, Blumberg B., Dev. Dyn. 232(2), 2005
PMID: 15614783
Arima K, Shiotsugu J, Niu R, Khandpur R, Martinez M, Shin Y, Koide T, Cho KW, Kitayama A, Ueno N, Chandraratna RA, Blumberg B., Dev. Dyn. 232(2), 2005
PMID: 15614783
A Xenopus DNA microarray approach to identify novel direct BMP target genes involved in early embryonic development.
Peiffer DA, Von Bubnoff A, Shin Y, Kitayama A, Mochii M, Ueno N, Cho KW., Dev. Dyn. 232(2), 2005
PMID: 15614776
Peiffer DA, Von Bubnoff A, Shin Y, Kitayama A, Mochii M, Ueno N, Cho KW., Dev. Dyn. 232(2), 2005
PMID: 15614776
Identification of neural genes using Xenopus DNA microarrays.
Shin Y, Kitayama A, Koide T, Peiffer DA, Mochii M, Liao A, Ueno N, Cho KW., Dev. Dyn. 232(2), 2005
PMID: 15614765
Shin Y, Kitayama A, Koide T, Peiffer DA, Mochii M, Liao A, Ueno N, Cho KW., Dev. Dyn. 232(2), 2005
PMID: 15614765
Screening of FGF target genes in Xenopus by microarray: temporal dissection of the signalling pathway using a chemical inhibitor.
Chung HA, Hyodo-Miura J, Kitayama A, Terasaka C, Nagamune T, Ueno N., Genes Cells 9(8), 2004
PMID: 15298682
Chung HA, Hyodo-Miura J, Kitayama A, Terasaka C, Nagamune T, Ueno N., Genes Cells 9(8), 2004
PMID: 15298682
Gene Expression Omnibus: NCBI gene expression and hybridization array data repository.
Edgar R, Domrachev M, Lash AE., Nucleic Acids Res. 30(1), 2002
PMID: 11752295
Edgar R, Domrachev M, Lash AE., Nucleic Acids Res. 30(1), 2002
PMID: 11752295
Analysis of the eye developmental pathway in Drosophila using DNA microarrays.
Michaut L, Flister S, Neeb M, White KP, Certa U, Gehring WJ., Proc. Natl. Acad. Sci. U.S.A. 100(7), 2003
PMID: 12655063
Michaut L, Flister S, Neeb M, White KP, Certa U, Gehring WJ., Proc. Natl. Acad. Sci. U.S.A. 100(7), 2003
PMID: 12655063
Genomic structure, evolutionary conservation and aniridia mutations in the human PAX6 gene.
Glaser T, Walton DS, Maas RL., Nat. Genet. 2(3), 1992
PMID: 1345175
Glaser T, Walton DS, Maas RL., Nat. Genet. 2(3), 1992
PMID: 1345175
Pax 6: mastering eye morphogenesis and eye evolution.
Gehring WJ, Ikeo K., Trends Genet. 15(9), 1999
PMID: 10461206
Gehring WJ, Ikeo K., Trends Genet. 15(9), 1999
PMID: 10461206
The genetic control of eye development and its implications for the evolution of the various eye-types.
Gehring WJ., Int. J. Dev. Biol. 46(1), 2002
PMID: 11902689
Gehring WJ., Int. J. Dev. Biol. 46(1), 2002
PMID: 11902689
Induction of ectopic eyes by targeted expression of the eyeless gene in Drosophila.
Halder G, Callaerts P, Gehring WJ., Science 267(5205), 1995
PMID: 7892602
Halder G, Callaerts P, Gehring WJ., Science 267(5205), 1995
PMID: 7892602
Pax6 induces ectopic eyes in a vertebrate.
Chow RL, Altmann CR, Lang RA, Hemmati-Brivanlou A., Development 126(19), 1999
PMID: 10477290
Chow RL, Altmann CR, Lang RA, Hemmati-Brivanlou A., Development 126(19), 1999
PMID: 10477290
The NCBI Gene Expression Omnibus
AUTHOR UNKNOWN, 2005
AUTHOR UNKNOWN, 2005
A gene atlas of the mouse and human protein-encoding transcriptomes.
Su AI, Wiltshire T, Batalov S, Lapp H, Ching KA, Block D, Zhang J, Soden R, Hayakawa M, Kreiman G, Cooke MP, Walker JR, Hogenesch JB., Proc. Natl. Acad. Sci. U.S.A. 101(16), 2004
PMID: 15075390
Su AI, Wiltshire T, Batalov S, Lapp H, Ching KA, Block D, Zhang J, Soden R, Hayakawa M, Kreiman G, Cooke MP, Walker JR, Hogenesch JB., Proc. Natl. Acad. Sci. U.S.A. 101(16), 2004
PMID: 15075390
Initial sequencing and comparative analysis of the mouse genome.
Mouse Genome Sequencing Consortium, Waterston RH, Lindblad-Toh K, Birney E, Rogers J, Abril JF, Agarwal P, Agarwala R, Ainscough R, Alexandersson M, An P, Antonarakis SE, Attwood J, Baertsch R, Bailey J, Barlow K, Beck S, Berry E, Birren B, Bloom T, Bork P, Botcherby M, Bray N, Brent MR, Brown DG, Brown SD, Bult C, Burton J, Butler J, Campbell RD, Carninci P, Cawley S, Chiaromonte F, Chinwalla AT, Church DM, Clamp M, Clee C, Collins FS, Cook LL, Copley RR, Coulson A, Couronne O, Cuff J, Curwen V, Cutts T, Daly M, David R, Davies J, Delehaunty KD, Deri J, Dermitzakis ET, Dewey C, Dickens NJ, Diekhans M, Dodge S, Dubchak I, Dunn DM, Eddy SR, Elnitski L, Emes RD, Eswara P, Eyras E, Felsenfeld A, Fewell GA, Flicek P, Foley K, Frankel WN, Fulton LA, Fulton RS, Furey TS, Gage D, Gibbs RA, Glusman G, Gnerre S, Goldman N, Goodstadt L, Grafham D, Graves TA, Green ED, Gregory S, Guigo R, Guyer M, Hardison RC, Haussler D, Hayashizaki Y, Hillier LW, Hinrichs A, Hlavina W, Holzer T, Hsu F, Hua A, Hubbard T, Hunt A, Jackson I, Jaffe DB, Johnson LS, Jones M, Jones TA, Joy A, Kamal M, Karlsson EK, Karolchik D, Kasprzyk A, Kawai J, Keibler E, Kells C, Kent WJ, Kirby A, Kolbe DL, Korf I, Kucherlapati RS, Kulbokas EJ, Kulp D, Landers T, Leger JP, Leonard S, Letunic I, Levine R, Li J, Li M, Lloyd C, Lucas S, Ma B, Maglott DR, Mardis ER, Matthews L, Mauceli E, Mayer JH, McCarthy M, McCombie WR, McLaren S, McLay K, McPherson JD, Meldrim J, Meredith B, Mesirov JP, Miller W, Miner TL, Mongin E, Montgomery KT, Morgan M, Mott R, Mullikin JC, Muzny DM, Nash WE, Nelson JO, Nhan MN, Nicol R, Ning Z, Nusbaum C, O'Connor MJ, Okazaki Y, Oliver K, Overton-Larty E, Pachter L, Parra G, Pepin KH, Peterson J, Pevzner P, Plumb R, Pohl CS, Poliakov A, Ponce TC, Ponting CP, Potter S, Quail M, Reymond A, Roe BA, Roskin KM, Rubin EM, Rust AG, Santos R, Sapojnikov V, Schultz B, Schultz J, Schwartz MS, Schwartz S, Scott C, Seaman S, Searle S, Sharpe T, Sheridan A, Shownkeen R, Sims S, Singer JB, Slater G, Smit A, Smith DR, Spencer B, Stabenau A, Stange-Thomann N, Sugnet C, Suyama M, Tesler G, Thompson J, Torrents D, Trevaskis E, Tromp J, Ucla C, Ureta-Vidal A, Vinson JP, Von Niederhausern AC, Wade CM, Wall M, Weber RJ, Weiss RB, Wendl MC, West AP, Wetterstrand K, Wheeler R, Whelan S, Wierzbowski J, Willey D, Williams S, Wilson RK, Winter E, Worley KC, Wyman D, Yang S, Yang SP, Zdobnov EM, Zody MC, Lander ES., Nature 420(6915), 2002
PMID: 12466850
Mouse Genome Sequencing Consortium, Waterston RH, Lindblad-Toh K, Birney E, Rogers J, Abril JF, Agarwal P, Agarwala R, Ainscough R, Alexandersson M, An P, Antonarakis SE, Attwood J, Baertsch R, Bailey J, Barlow K, Beck S, Berry E, Birren B, Bloom T, Bork P, Botcherby M, Bray N, Brent MR, Brown DG, Brown SD, Bult C, Burton J, Butler J, Campbell RD, Carninci P, Cawley S, Chiaromonte F, Chinwalla AT, Church DM, Clamp M, Clee C, Collins FS, Cook LL, Copley RR, Coulson A, Couronne O, Cuff J, Curwen V, Cutts T, Daly M, David R, Davies J, Delehaunty KD, Deri J, Dermitzakis ET, Dewey C, Dickens NJ, Diekhans M, Dodge S, Dubchak I, Dunn DM, Eddy SR, Elnitski L, Emes RD, Eswara P, Eyras E, Felsenfeld A, Fewell GA, Flicek P, Foley K, Frankel WN, Fulton LA, Fulton RS, Furey TS, Gage D, Gibbs RA, Glusman G, Gnerre S, Goldman N, Goodstadt L, Grafham D, Graves TA, Green ED, Gregory S, Guigo R, Guyer M, Hardison RC, Haussler D, Hayashizaki Y, Hillier LW, Hinrichs A, Hlavina W, Holzer T, Hsu F, Hua A, Hubbard T, Hunt A, Jackson I, Jaffe DB, Johnson LS, Jones M, Jones TA, Joy A, Kamal M, Karlsson EK, Karolchik D, Kasprzyk A, Kawai J, Keibler E, Kells C, Kent WJ, Kirby A, Kolbe DL, Korf I, Kucherlapati RS, Kulbokas EJ, Kulp D, Landers T, Leger JP, Leonard S, Letunic I, Levine R, Li J, Li M, Lloyd C, Lucas S, Ma B, Maglott DR, Mardis ER, Matthews L, Mauceli E, Mayer JH, McCarthy M, McCombie WR, McLaren S, McLay K, McPherson JD, Meldrim J, Meredith B, Mesirov JP, Miller W, Miner TL, Mongin E, Montgomery KT, Morgan M, Mott R, Mullikin JC, Muzny DM, Nash WE, Nelson JO, Nhan MN, Nicol R, Ning Z, Nusbaum C, O'Connor MJ, Okazaki Y, Oliver K, Overton-Larty E, Pachter L, Parra G, Pepin KH, Peterson J, Pevzner P, Plumb R, Pohl CS, Poliakov A, Ponce TC, Ponting CP, Potter S, Quail M, Reymond A, Roe BA, Roskin KM, Rubin EM, Rust AG, Santos R, Sapojnikov V, Schultz B, Schultz J, Schwartz MS, Schwartz S, Scott C, Seaman S, Searle S, Sharpe T, Sheridan A, Shownkeen R, Sims S, Singer JB, Slater G, Smit A, Smith DR, Spencer B, Stabenau A, Stange-Thomann N, Sugnet C, Suyama M, Tesler G, Thompson J, Torrents D, Trevaskis E, Tromp J, Ucla C, Ureta-Vidal A, Vinson JP, Von Niederhausern AC, Wade CM, Wall M, Weber RJ, Weiss RB, Wendl MC, West AP, Wetterstrand K, Wheeler R, Whelan S, Wierzbowski J, Willey D, Williams S, Wilson RK, Winter E, Worley KC, Wyman D, Yang S, Yang SP, Zdobnov EM, Zody MC, Lander ES., Nature 420(6915), 2002
PMID: 12466850
Employment opportunities for non-coding RNAs.
Morey C, Avner P., FEBS Lett. 567(1), 2004
PMID: 15165889
Morey C, Avner P., FEBS Lett. 567(1), 2004
PMID: 15165889
MicroRNAs: genomics, biogenesis, mechanism, and function.
Bartel DP., Cell 116(2), 2004
PMID: 14744438
Bartel DP., Cell 116(2), 2004
PMID: 14744438
Genome wide identification and classification of alternative splicing based on EST data.
Gupta S, Zink D, Korn B, Vingron M, Haas SA., Bioinformatics 20(16), 2004
PMID: 15117759
Gupta S, Zink D, Korn B, Vingron M, Haas SA., Bioinformatics 20(16), 2004
PMID: 15117759
Widespread occurrence of antisense transcription in the human genome.
Yelin R, Dahary D, Sorek R, Levanon EY, Goldstein O, Shoshan A, Diber A, Biton S, Tamir Y, Khosravi R, Nemzer S, Pinner E, Walach S, Bernstein J, Savitsky K, Rotman G., Nat. Biotechnol. 21(4), 2003
PMID: 12640466
Yelin R, Dahary D, Sorek R, Levanon EY, Goldstein O, Shoshan A, Diber A, Biton S, Tamir Y, Khosravi R, Nemzer S, Pinner E, Walach S, Bernstein J, Savitsky K, Rotman G., Nat. Biotechnol. 21(4), 2003
PMID: 12640466
Non-coding RNAs: the architects of eukaryotic complexity.
Mattick JS., EMBO Rep. 2(11), 2001
PMID: 11713189
Mattick JS., EMBO Rep. 2(11), 2001
PMID: 11713189
The fate of duplicated major histocompatibility complex class Ia genes in a dodecaploid amphibian, Xenopus ruwenzoriensis.
Sammut B, Marcuz A, Pasquier LD., Eur. J. Immunol. 32(6), 2002
PMID: 12115642
Sammut B, Marcuz A, Pasquier LD., Eur. J. Immunol. 32(6), 2002
PMID: 12115642
Trans-NIH Xenopus Initiative Website
AUTHOR UNKNOWN, 2005
AUTHOR UNKNOWN, 2005
Xenbase Xenopus Web Resource Website
AUTHOR UNKNOWN, 2005
AUTHOR UNKNOWN, 2005
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