107 Publikationen
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2024 | Preprint | Veröffentlicht | PUB-ID: 2993878Metagenomics-Toolkit: The Flexible and Efficient Cloud-Based Metagenomics Workflow featuring Machine Learning-Enabled Resource AllocationPUB | DOI
Belmann, Peter, Metagenomics-Toolkit: The Flexible and Efficient Cloud-Based Metagenomics Workflow featuring Machine Learning-Enabled Resource Allocation. bioRxiv (). , 2024 -
2024 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2985402Breakdown of hardly degradable carbohydrates (lignocellulose) in a two-stage anaerobic digestion plant is favored in the main fermenterPUB | DOI
Heyer, Robert, Breakdown of hardly degradable carbohydrates (lignocellulose) in a two-stage anaerobic digestion plant is favored in the main fermenter. Water Research 250 (). , 2024 -
2023 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2977923
Abundance, classification and genetic potential of Thaumarchaeota in metagenomes of European agricultural soils: a meta-analysisPUB | PDF | DOI | WoS | PubMed | Europe PMC
Nelkner, Johanna, Abundance, classification and genetic potential of Thaumarchaeota in metagenomes of European agricultural soils: a meta-analysis. Environmental Microbiome 18 (1). , 2023 -
2023 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2983209
Uncovering Microbiome Adaptations in a Full-Scale Biogas Plant: Insights from MAG-Centric Metagenomics and MetaproteomicsPUB | PDF | DOI | Download (ext.) | WoS | PubMed | Europe PMC
Hassa, Julia, Uncovering Microbiome Adaptations in a Full-Scale Biogas Plant: Insights from MAG-Centric Metagenomics and Metaproteomics. Microorganisms 11 (10). , 2023 -
2023 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2984553Base4NFDI - Basic Services for NFDIPUB | DOI
Schimmler, Sonja, Base4NFDI - Basic Services for NFDI. Proceedings of the Conference on Research Data Infrastructure 1 (). , 2023 -
2023 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2984552Embedding the de.NBI Cloud in the National Research Data Infrastructure ActivitiesPUB | DOI
Hoffmann, Nils, Embedding the de.NBI Cloud in the National Research Data Infrastructure Activities. Proceedings of the Conference on Research Data Infrastructure 1 (). , 2023 -
2023 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2984551NFDI4Microbiota – national research data infrastructure for microbiota researchPUB | DOI
Förstner, Konrad U., NFDI4Microbiota – national research data infrastructure for microbiota research. Research Ideas and Outcomes 9 (). , 2023 -
2023 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2979860Advances in the clinical use of metaproteomicsPUB | DOI | WoS | PubMed | Europe PMC
Wolf, Maximilian, Advances in the clinical use of metaproteomics. Expert review of proteomics (). , 2023 -
2023 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2968667Reekeekee- and roodoodooviruses, two different Microviridae clades constituted by the smallest DNA phagesPUB | DOI | WoS | PubMed | Europe PMC
Olo Ndela, Eric, Reekeekee- and roodoodooviruses, two different Microviridae clades constituted by the smallest DNA phages. Virus Evolution 9 (1). , 2023 -
2022 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2969509Expansion of the global RNA virome reveals diverse clades of bacteriophagesPUB | DOI | WoS | PubMed | Europe PMC
Neri, Uri, Expansion of the global RNA virome reveals diverse clades of bacteriophages. Cell 185 (21). , 2022 -
2022 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2969511Thousands of small, novel genes predicted in global phage genomesPUB | DOI | WoS | PubMed | Europe PMC
Fremin, Brayon J., Thousands of small, novel genes predicted in global phage genomes. Cell Reports 39 (12). , 2022 -
2022 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2967098Adaptation of a microbial community to demand-oriented biological methanationPUB | DOI | WoS | PubMed | Europe PMC
Khesali Aghtaei, Hoda, Adaptation of a microbial community to demand-oriented biological methanation. Biotechnology for Biofuels and Bioproducts 15 (1). , 2022 -
2022 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2966901
The novel oligopeptide utilizing species Anaeropeptidivorans aminofermentans M3/9T, its role in anaerobic digestion and occurrence as deduced from large-scale fragment recruitment analysesPUB | PDF | DOI | Download (ext.) | WoS | PubMed | Europe PMC
Maus, Irena, The novel oligopeptide utilizing species Anaeropeptidivorans aminofermentans M3/9T, its role in anaerobic digestion and occurrence as deduced from large-scale fragment recruitment analyses. Frontiers in Microbiology 13 (). , 2022 -
2022 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2966286
Effect of Growth Media on the Diversity of Neocallimastigomycetes from Non-Rumen HabitatsPUB | PDF | DOI | Download (ext.) | WoS | PubMed | Europe PMC
Joshi, Akshay, Effect of Growth Media on the Diversity of Neocallimastigomycetes from Non-Rumen Habitats. Microorganisms 10 (10). , 2022 -
2022 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2965465
Simultaneous Metabarcoding and Quantification of Neocallimastigomycetes from Environmental Samples: Insights into Community Composition and Novel LineagesPUB | PDF | DOI | Download (ext.) | WoS | PubMed | Europe PMC
Young, Diana, Simultaneous Metabarcoding and Quantification of Neocallimastigomycetes from Environmental Samples: Insights into Community Composition and Novel Lineages. Microorganisms 10 (9). , 2022 -
2022 | Herausgeber*in Sammelwerk | Veröffentlicht | PUB-ID: 2963745
Development and Operation of the Federated de.NBI Cloud: Contributions of the German Network for Bioinformatics InfrastructurePUB | PDF | DOI
Sczyrba, Alexander, Development and Operation of the Federated de.NBI Cloud: Contributions of the German Network for Bioinformatics Infrastructure. (). Bielefeld, 2022 -
2022 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2962388Critical Assessment of Metagenome Interpretation: the second round of challengesPUB | DOI | Download (ext.) | WoS | PubMed | Europe PMC | Preprint
Meyer, Fernando, Critical Assessment of Metagenome Interpretation: the second round of challenges. Nature Methods 19 (). , 2022 -
2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2950292
Phytoplankton consortia as a blueprint for mutually beneficial eukaryote-bacteria ecosystems based on the biocoenosis of Botryococcus consortiaPUB | PDF | DOI | WoS | PubMed | Europe PMC | Preprint
Blifernez-Klassen, Olga, Phytoplankton consortia as a blueprint for mutually beneficial eukaryote-bacteria ecosystems based on the biocoenosis of Botryococcus consortia. Scientific Reports 11 (1). , 2021 -
2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2957501
Multiple Occurrences of a 168-Nucleotide Deletion in SARS-CoV-2 ORF8, Unnoticed by Standard Amplicon Sequencing and Variant Calling PipelinesPUB | PDF | DOI | WoS | PubMed | Europe PMC
Brandt, David, Multiple Occurrences of a 168-Nucleotide Deletion in SARS-CoV-2 ORF8, Unnoticed by Standard Amplicon Sequencing and Variant Calling Pipelines. Viruses 13 (9). , 2021 -
2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2956369Haploflow: strain-resolved de novo assembly of viral genomesPUB | DOI | WoS | PubMed | Europe PMC | Preprint
Fritz, Adrian, Haploflow: strain-resolved de novo assembly of viral genomes. Genome Biology 22 (1). , 2021 -
2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2960171Critical Assessment of MetaProteome Investigation (CAMPI): a multi-laboratory comparison of established workflowsPUB | DOI | WoS | PubMed | Europe PMC
Van Den Bossche, Tim, Critical Assessment of MetaProteome Investigation (CAMPI): a multi-laboratory comparison of established workflows. Nature Communications 12 (1). , 2021 -
2021 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2960900EOSC-Life Report on the work of the initial demonstratorsPUB | DOI
Leitner, Frauke, EOSC-Life Report on the work of the initial demonstrators. (). , 2021 -
2021 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2955512Going to extremes - a metagenomic journey into the dark matter of lifePUB | DOI | WoS | PubMed | Europe PMC
Aevarsson, Arnthor, Going to extremes - a metagenomic journey into the dark matter of life. FEMS microbiology letters (). , 2021 -
2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2952275Tutorial: assessing metagenomics software with the CAMI benchmarking toolkitPUB | DOI | WoS | PubMed | Europe PMC
Meyer, Fernando, Tutorial: assessing metagenomics software with the CAMI benchmarking toolkit. Nature Protocols 16 (4). , 2021 -
2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2951537
Identification of Beneficial Microbial Consortia and Bioactive Compounds with Potential as Plant Biostimulants for a Sustainable AgriculturePUB | PDF | DOI | WoS | PubMed | Europe PMC
Tabacchioni, Silvia, Identification of Beneficial Microbial Consortia and Bioactive Compounds with Potential as Plant Biostimulants for a Sustainable Agriculture. Microorganisms 9 (2). , 2021 -
2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941645
Impact of process temperature and organic loading rate on cellulolytic / hydrolytic biofilm microbiomes during biomethanation of ryegrass silage revealed by genome-centered metagenomics and metatranscriptomicsPUB | PDF | DOI | Download (ext.) | WoS | PubMed | Europe PMC
Maus, Irena, Impact of process temperature and organic loading rate on cellulolytic / hydrolytic biofilm microbiomes during biomethanation of ryegrass silage revealed by genome-centered metagenomics and metatranscriptomics. Environmental Microbiome 15 (1). , 2020 -
2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2953267Severe COVID-19 Is Marked by a Dysregulated Myeloid Cell CompartmentPUB | DOI | WoS | PubMed | Europe PMC
Schulte-Schrepping, Jonas, Severe COVID-19 Is Marked by a Dysregulated Myeloid Cell Compartment. Cell 182 (6). , 2020 -
2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2944226
Importance of Defluviitalea raffinosedens for Hydrolytic Biomass Degradation in Co-Culture with Hungateiclostridium thermocellumPUB | PDF | DOI | WoS | PubMed | Europe PMC
Rettenmaier, Regina, Importance of Defluviitalea raffinosedens for Hydrolytic Biomass Degradation in Co-Culture with Hungateiclostridium thermocellum. Microorganisms 8 (6). , 2020 -
2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2949597
The Role of Petrimonas mucosa ING2-E5AT in Mesophilic Biogas Reactor Systems as Deduced from Multiomics AnalysesPUB | PDF | DOI | WoS | PubMed | Europe PMC
Maus, Irena, The Role of Petrimonas mucosa ING2-E5AT in Mesophilic Biogas Reactor Systems as Deduced from Multiomics Analyses. Microorganisms 8 (12). , 2020 -
2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2948401
ConCysFind: a pipeline tool to predict conserved amino acids of protein sequences across the plant kingdomPUB | PDF | DOI | WoS | PubMed | Europe PMC
Moore, Marten, ConCysFind: a pipeline tool to predict conserved amino acids of protein sequences across the plant kingdom. BMC Bioinformatics 21 (1). , 2020 -
2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941704An Integrated Metagenome Catalog Reveals New Insights into the Murine Gut Microbiome.PUB | DOI | WoS | PubMed | Europe PMC
Lesker, Till R, An Integrated Metagenome Catalog Reveals New Insights into the Murine Gut Microbiome.. Cell reports 30 (9). , 2020 -
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2935923
Effect of Long-Term Farming Practices on Agricultural Soil Microbiome Members Represented by Metagenomically Assembled Genomes (MAGs) and Their Predicted Plant-Beneficial GenesPUB | PDF | DOI | Download (ext.) | WoS | PubMed | Europe PMC
Nelkner, Johanna, Effect of Long-Term Farming Practices on Agricultural Soil Microbiome Members Represented by Metagenomically Assembled Genomes (MAGs) and Their Predicted Plant-Beneficial Genes. Genes 10 (6). , 2019 -
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2933767CAMISIM: simulating metagenomes and microbial communitiesPUB | DOI | Download (ext.) | WoS | PubMed | Europe PMC
Fritz, Adrian, CAMISIM: simulating metagenomes and microbial communities. Microbiome 7 (1). , 2019 -
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2934798Evaluation of commercially available DNA extraction kits for the analysis of the broiler chicken cecal microbiota.PUB | DOI | WoS | PubMed | Europe PMC
Pankoke, Helga, Evaluation of commercially available DNA extraction kits for the analysis of the broiler chicken cecal microbiota.. FEMS microbiology letters (). , 2019 -
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2936223
de.NBI Cloud federation through ELIXIR AAIPUB | PDF | DOI | Download (ext.) | PubMed | Europe PMC
Belmann, Peter, de.NBI Cloud federation through ELIXIR AAI. F1000Research 8 (). , 2019 -
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2930593Common ELIXIR Service for Researcher Authentication and AuthorisationPUB | DOI | Download (ext.) | PubMed | Europe PMC
Linden, Mikael, Common ELIXIR Service for Researcher Authentication and Authorisation. F1000Research 7 (). , 2018 -
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2920723AMBER: Assessment of Metagenome BinnERsPUB | DOI | Download (ext.) | WoS | PubMed | Europe PMC
Meyer, Fernando, AMBER: Assessment of Metagenome BinnERs. GigaScience 7 (6). , 2018 -
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2920777Binning Enables Efficient Host Genome Reconstruction in Cnidarian HolobiontsPUB | DOI | Download (ext.) | WoS | PubMed | Europe PMC
Celis, Juan Sebastián, Binning Enables Efficient Host Genome Reconstruction in Cnidarian Holobionts. GigaScience 7 (7). , 2018 -
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2920750Characterization of Bathyarchaeota genomes assembled from metagenomes of biofilms residing in mesophilic and thermophilic biogas reactorsPUB | DOI | Download (ext.) | WoS | PubMed | Europe PMC
Maus, Irena, Characterization of Bathyarchaeota genomes assembled from metagenomes of biofilms residing in mesophilic and thermophilic biogas reactors. Biotechnology for Biofuels 11 (1). , 2018 -
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2915890Analyzing large scale genomic data on the cloud with SparkhitPUB | DOI | Download (ext.) | WoS | PubMed | Europe PMC
Huang, Liren, Analyzing large scale genomic data on the cloud with Sparkhit. Bioinformatics 34 (9). , 2018 -
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2916929Targeted in situ metatranscriptomics for selected taxa from mesophilic and thermophilic biogas plantsPUB | DOI | Download (ext.) | WoS | PubMed | Europe PMC
Stolze, Yvonne, Targeted in situ metatranscriptomics for selected taxa from mesophilic and thermophilic biogas plants. Microbial Biotechnology 11 (4). , 2018 -
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2914959Invasion ecology applied to inoculation of plant growth promoting bacteria through a novel SIMPER-PCA approachPUB | DOI | WoS
da Schoren Costa, Pedro, Invasion ecology applied to inoculation of plant growth promoting bacteria through a novel SIMPER-PCA approach. Plant and Soil 422 (1-2). , 2018 -
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2918275Insights into the fundamental physiology of the uncultured Fe-oxidizing bacterium Leptothrix ochraceaPUB | DOI | WoS | PubMed | Europe PMC
Fleming, E. J., Insights into the fundamental physiology of the uncultured Fe-oxidizing bacterium Leptothrix ochracea. Applied and Environmental Microbiology 84 (9). , 2018 -
2017 | Zeitschriftenaufsatz | PUB-ID: 2913876Benchmark data sets, software results and reference data for the first CAMI challengePUB | DOI
Sczyrba, Alexander, Benchmark data sets, software results and reference data for the first CAMI challenge. GigaScience Database (). , 2017 -
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2914367Critical Assessment of Metagenome Interpretation—a benchmark of metagenomics softwarePUB | DOI | Download (ext.) | WoS | PubMed | Europe PMC
Sczyrba, Alexander, Critical Assessment of Metagenome Interpretation—a benchmark of metagenomics software. Nature Methods 14 (11). , 2017 -
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2909153
Rapid protein alignment in the cloud: HAMOND combines fast DIAMOND alignments with Hadoop parallelismPUB | PDF | DOI | WoS | PubMed | Europe PMC
Yu, Jia, Rapid protein alignment in the cloud: HAMOND combines fast DIAMOND alignments with Hadoop parallelism. Journal of Biotechnology 257 (). , 2017 -
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2915516
Genomics and prevalence of bacterial and archaeal isolates from biogas-producing microbiomesPUB | PDF | DOI | Download (ext.) | WoS | PubMed | Europe PMC
Maus, Irena, Genomics and prevalence of bacterial and archaeal isolates from biogas-producing microbiomes. Biotechnology for Biofuels 10 (1). , 2017 -
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2913556Bioinformatics for NGS-based metagenomics and the application to biogas researchPUB | DOI | Download (ext.) | WoS | PubMed | Europe PMC
Jünemann, Sebastian, Bioinformatics for NGS-based metagenomics and the application to biogas research. Journal of Biotechnology 261 (SI). , 2017 -
2017 | Datenpublikation | PUB-ID: 2914921
Sparkhit evaluation data setPUB | Dateien verfügbar | DOI
Huang, Liren, Sparkhit evaluation data set. (). , 2017 -
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2904836Proteotyping of biogas plant microbiomes separates biogas plants according to process temperature and reactor typePUB | DOI | WoS | PubMed | Europe PMC
Heyer, R., Proteotyping of biogas plant microbiomes separates biogas plants according to process temperature and reactor type. Biotechnology for Biofuels 9 (1). , 2016 -
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2905260Unraveling the microbiome of a thermophilic biogas plant by metagenome and metatranscriptome analysis complemented by characterization of bacterial and archaeal isolatesPUB | DOI | WoS | PubMed | Europe PMC
Maus, Irena, Unraveling the microbiome of a thermophilic biogas plant by metagenome and metatranscriptome analysis complemented by characterization of bacterial and archaeal isolates. Biotechnology for Biofuels 9 (1). , 2016 -
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2901729MeCorS: Metagenome-enabled error correction of single cell sequencing readsPUB | DOI | WoS | PubMed | Europe PMC
Bremges, Andreas, MeCorS: Metagenome-enabled error correction of single cell sequencing reads. Bioinformatics 32 (14). , 2016 -
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2900928Back to the future of soil metagenomicsPUB | DOI | WoS | PubMed | Europe PMC
Nesme, Joseph, Back to the future of soil metagenomics. Frontiers in Microbiology 7 (). , 2016 -
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2904815
Identification and genome reconstruction of abundant distinct taxa in microbiomes from one thermophilic and three mesophilic production-scale biogas plantsPUB | PDF | DOI | WoS | PubMed | Europe PMC
Stolze, Yvonne, Identification and genome reconstruction of abundant distinct taxa in microbiomes from one thermophilic and three mesophilic production-scale biogas plants. Biotechnology for Biofuels 9 (1). , 2016 -
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2907633
acdc – Automated Contamination Detection and Confidence estimation for single-cell genome dataPUB | PDF | DOI | WoS | PubMed | Europe PMC
Lux, Markus, acdc – Automated Contamination Detection and Confidence estimation for single-cell genome data. BMC Bioinformatics 17 (1). , 2016 -
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2903489Genomic characterization of Defluviitoga tunisiensis L3, a key hydrolytic bacterium in a thermophilic biogas plant and its abundance as determined by metagenome fragment recruitmentPUB | DOI | WoS | PubMed | Europe PMC
Maus, Irena, Genomic characterization of Defluviitoga tunisiensis L3, a key hydrolytic bacterium in a thermophilic biogas plant and its abundance as determined by metagenome fragment recruitment. Journal of Biotechnology 232 (). , 2016 -
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2903302Finished genome sequence and methylome of the cyanide-degrading Pseudomonas pseudoalcaligenes strain CECT5344 as resolved by single-molecule real-time sequencingPUB | DOI | WoS | PubMed | Europe PMC
Wibberg, Daniel, Finished genome sequence and methylome of the cyanide-degrading Pseudomonas pseudoalcaligenes strain CECT5344 as resolved by single-molecule real-time sequencing. Journal of Biotechnology 232 (). , 2016 -
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2901418Soil suppressiveness and its relations with the microbial community in a Brazilian subtropical agroecosystem under different management systemsPUB | DOI | WoS
Campos, Samanta B., Soil suppressiveness and its relations with the microbial community in a Brazilian subtropical agroecosystem under different management systems. Soil Biology and Biochemistry 96 (). , 2016 -
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2902190miRNA profiling of high, low and non-producing CHO cells during biphasic fed-batch cultivation reveals process relevant targets for host cell engineeringPUB | DOI | WoS | PubMed | Europe PMC
Stiefel, Fabian, miRNA profiling of high, low and non-producing CHO cells during biphasic fed-batch cultivation reveals process relevant targets for host cell engineering. Journal of Biotechnology 225 (). , 2016 -
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2901675Intraspecies transfer of the chromosomally encoded Acinetobacter baumannii blaNDM-1 carbapenemase gene.PUB | DOI | WoS | PubMed | Europe PMC
Krahn, Thomas, Intraspecies transfer of the chromosomally encoded Acinetobacter baumannii blaNDM-1 carbapenemase gene.. Antimicrobial Agents and Chemotherapy 60 (5). , 2016 -
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2904234An integrated metagenome and -proteome analysis of the microbial community residing in a biogas production plantPUB | DOI | WoS | PubMed | Europe PMC
Ortseifen, Vera, An integrated metagenome and -proteome analysis of the microbial community residing in a biogas production plant. Journal of Biotechnology 231 (). , 2016 -
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2764906
Deeply sequenced metagenome and metatranscriptome of a biogas-producing microbial community from an agricultural production-scale biogas plantPUB | PDF | DOI | WoS | PubMed | Europe PMC
Bremges, Andreas, Deeply sequenced metagenome and metatranscriptome of a biogas-producing microbial community from an agricultural production-scale biogas plant. GigaScience 4 (1). , 2015 -
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2782501Bioboxes: standardised containers for interchangeable bioinformatics softwarePUB | DOI | WoS | PubMed | Europe PMC
Belmann, Peter, Bioboxes: standardised containers for interchangeable bioinformatics software. GigaScience 4 (1). , 2015 -
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2726156Targeted diversity generation by intraterrestrial archaea and archaeal virusesPUB | DOI | WoS | PubMed | Europe PMC
Paul, Blair G., Targeted diversity generation by intraterrestrial archaea and archaeal viruses. Nature Communications 6 (1). , 2015 -
2015 | Preprint | Veröffentlicht | PUB-ID: 2901613Automated Contamination Detection in Single-Cell SequencingPUB
Lux, Markus, Automated Contamination Detection in Single-Cell Sequencing. bioRxiv (). , 2015 -
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2762833Fractionation of biogas plant sludge material improves metaproteomic characterization to investigate metabolic activity of microbial communitiesPUB | DOI | WoS | PubMed | Europe PMC
Kohrs, Fabian, Fractionation of biogas plant sludge material improves metaproteomic characterization to investigate metabolic activity of microbial communities. Proteomics 15 (20). , 2015 -
2015 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2901466A Bioinformatics Pipeline for the Detection of β-lactamase Genes in Metagenome Sequence Data and its Application to Production-Scale Biogas PlantsPUB
Osterholz, Benedikt, A Bioinformatics Pipeline for the Detection of β-lactamase Genes in Metagenome Sequence Data and its Application to Production-Scale Biogas Plants. (). , 2015 -
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2726183Genomic insights into the uncultivated marine Zetaproteobacteria at Loihi SeamountPUB | DOI | WoS | PubMed | Europe PMC
Field, Erin K., Genomic insights into the uncultivated marine Zetaproteobacteria at Loihi Seamount. The ISME journal 9 (4). , 2015 -
2015 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2901612Automatic discovery of metagenomic structurePUB | DOI
Lux, Markus, Automatic discovery of metagenomic structure. 2015 International Joint Conference on Neural Networks (IJCNN) (). , 2015 -
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2685992Temporal dynamics of fibrolytic and methanogenic rumen microorganisms during in situ incubation of switchgrass determined by 16S rRNA gene profilingPUB | DOI | Download (ext.) | WoS | PubMed | Europe PMC
Piao, Hailan, Temporal dynamics of fibrolytic and methanogenic rumen microorganisms during in situ incubation of switchgrass determined by 16S rRNA gene profiling. Frontiers in Microbiology 5 (307). , 2014 -
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2698163Phylogenomically Guided Identification of Industrially Relevant GH1 β-Glucosidases through DNA Synthesis and Nanostructure-Initiator Mass SpectrometryPUB | DOI | WoS | PubMed | Europe PMC
Heins, Richard A, Phylogenomically Guided Identification of Industrially Relevant GH1 β-Glucosidases through DNA Synthesis and Nanostructure-Initiator Mass Spectrometry. ACS chemical biology 9 (9). , 2014 -
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2654433The Candidate Phylum Poribacteria by Single-Cell Genomics: New Insights into Phylogeny, Cell-Compartmentation, Eukaryote-Like Repeat Proteins, and Other Genomic FeaturesPUB | DOI | WoS | PubMed | Europe PMC
Kamke, Janine, The Candidate Phylum Poribacteria by Single-Cell Genomics: New Insights into Phylogeny, Cell-Compartmentation, Eukaryote-Like Repeat Proteins, and Other Genomic Features. PLoS ONE 9 (1). , 2014 -
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2689051Comparative single-cell genomics reveals potential ecological niches for the freshwater acI Actinobacteria lineagePUB | DOI | WoS | PubMed | Europe PMC
Ghylin, Trevor W., Comparative single-cell genomics reveals potential ecological niches for the freshwater acI Actinobacteria lineage. The ISME Journal 8 (12). , 2014 -
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2672695Genomic and metabolic diversity of marine group I thaumarchaeota in the mesopelagic of two subtropical gyresPUB | DOI | WoS | PubMed | Europe PMC
Swan, Brandon K., Genomic and metabolic diversity of marine group I thaumarchaeota in the mesopelagic of two subtropical gyres. PloS one 9 (4). , 2014 -
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2665333Mycoplasma salivarium as a Dominant Coloniser of Fanconi Anaemia Associated Oral CarcinomaPUB | DOI | WoS | PubMed | Europe PMC
Henrich, Birgit, Mycoplasma salivarium as a Dominant Coloniser of Fanconi Anaemia Associated Oral Carcinoma. PLoS ONE 9 (3). , 2014 -
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2662055Complete genome sequence of the cyanide-degrading bacterium Pseudomonas pseudoalcaligenes CECT5344PUB | DOI | WoS | PubMed | Europe PMC
Wibberg, Daniel, Complete genome sequence of the cyanide-degrading bacterium Pseudomonas pseudoalcaligenes CECT5344. Journal of biotechnology 175 (). , 2014 -
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2638234Single-cell genomics reveal low recombination frequencies in freshwater bacteria of the SAR11 cladePUB | DOI | WoS | PubMed | Europe PMC
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