Mycoplasma salivarium as a Dominant Coloniser of Fanconi Anaemia Associated Oral Carcinoma
Henrich B, Rumming M, Sczyrba A, Velleuer E, Dietrich R, Gerlach W, Gombert M, Rahn S, Stoye J, Borkhardt A, Fischer U (2014)
PLoS ONE 9(3): e92297.
Zeitschriftenaufsatz
| Veröffentlicht | Englisch
Download
Es wurden keine Dateien hochgeladen. Nur Publikationsnachweis!
Autor*in
Henrich, Birgit;
Rumming, MadisUniBi;
Sczyrba, AlexanderUniBi ;
Velleuer, Eunike;
Dietrich, Ralf;
Gerlach, WolfgangUniBi;
Gombert, Michael;
Rahn, Sebastian;
Stoye, JensUniBi ;
Borkhardt, Arndt;
Fischer, Ute
Einrichtung
Technische Fakultät > Computational Metagenomics
Technische Fakultät > AG Genominformatik
Centrum für Biotechnologie > Arbeitsgruppe A. Sczyrba
Centrum für Biotechnologie > Arbeitsgruppe J. Stoye
Centrum für Biotechnologie > Institut für Bioinformatik
Technische Fakultät > Int. Graduiertenkolleg DiDy (GRK 1906)
Technische Fakultät > AG Genominformatik
Centrum für Biotechnologie > Arbeitsgruppe A. Sczyrba
Centrum für Biotechnologie > Arbeitsgruppe J. Stoye
Centrum für Biotechnologie > Institut für Bioinformatik
Technische Fakultät > Int. Graduiertenkolleg DiDy (GRK 1906)
Abstract / Bemerkung
Mycoplasma salivarium belongs to the class of the smallest self-replicating Tenericutes and is predominantly found in the oral cavity of humans. In general it is considered as a non-pathogenic commensal. However, some reports point to an association with human diseases. M. salivarium was found e.g. as causative agent of a submasseteric abscess, in necrotic dental pulp, in brain abscess and clogged biliary stent. Here we describe the detection of M. salivarium on the surface of a squamous cell carcinoma of the tongue of a patient with Fanconi anaemia (FA). FA is an inherited bone marrow failure syndrome based on defective DNA-repair that increases the risk of carcinomas especially oral squamous cell carcinoma. Employing high coverage, massive parallel Roche/454-next-generation-sequencing of 16S rRNA gene amplicons we analysed the oral microbiome of this FA patient in comparison to that of an FA patient with a benign leukoplakia and five healthy individuals. The microbiota of the FA patient with leukoplakia correlated well with that of the healthy controls. A dominance of Streptococcus, Veillonella and Neisseria species was typically observed. In contrast, the microbiome of the cancer bearing FA patient was dominated by Pseudomonas aeruginosa at the healthy sites, which changed to a predominance of 98% M. salivarium on the tumour surface. Quantification of the mycoplasma load in five healthy, two tumour- and two leukoplakia-FA patients by TaqMan-PCR confirmed the prevalence of M. salivarium at the tumour sites. These new findings suggest that this mycoplasma species with its reduced coding capacity found ideal breeding grounds at the tumour sites. Interestingly, the oral cavity of all FA patients and especially samples at the tumour sites were in addition positive for Candida albicans. It remains to be elucidated in further studies whether M. salivarium can be used as a predictive biomarker for tumour development in these patients.
Erscheinungsjahr
2014
Zeitschriftentitel
PLoS ONE
Band
9
Ausgabe
3
Art.-Nr.
e92297
ISSN
1932-6203
eISSN
1932-6203
Page URI
https://pub.uni-bielefeld.de/record/2665333
Zitieren
Henrich B, Rumming M, Sczyrba A, et al. Mycoplasma salivarium as a Dominant Coloniser of Fanconi Anaemia Associated Oral Carcinoma. PLoS ONE. 2014;9(3): e92297.
Henrich, B., Rumming, M., Sczyrba, A., Velleuer, E., Dietrich, R., Gerlach, W., Gombert, M., et al. (2014). Mycoplasma salivarium as a Dominant Coloniser of Fanconi Anaemia Associated Oral Carcinoma. PLoS ONE, 9(3), e92297. doi:10.1371/journal.pone.0092297
Henrich, Birgit, Rumming, Madis, Sczyrba, Alexander, Velleuer, Eunike, Dietrich, Ralf, Gerlach, Wolfgang, Gombert, Michael, et al. 2014. “Mycoplasma salivarium as a Dominant Coloniser of Fanconi Anaemia Associated Oral Carcinoma”. PLoS ONE 9 (3): e92297.
Henrich, B., Rumming, M., Sczyrba, A., Velleuer, E., Dietrich, R., Gerlach, W., Gombert, M., Rahn, S., Stoye, J., Borkhardt, A., et al. (2014). Mycoplasma salivarium as a Dominant Coloniser of Fanconi Anaemia Associated Oral Carcinoma. PLoS ONE 9:e92297.
Henrich, B., et al., 2014. Mycoplasma salivarium as a Dominant Coloniser of Fanconi Anaemia Associated Oral Carcinoma. PLoS ONE, 9(3): e92297.
B. Henrich, et al., “Mycoplasma salivarium as a Dominant Coloniser of Fanconi Anaemia Associated Oral Carcinoma”, PLoS ONE, vol. 9, 2014, : e92297.
Henrich, B., Rumming, M., Sczyrba, A., Velleuer, E., Dietrich, R., Gerlach, W., Gombert, M., Rahn, S., Stoye, J., Borkhardt, A., Fischer, U.: Mycoplasma salivarium as a Dominant Coloniser of Fanconi Anaemia Associated Oral Carcinoma. PLoS ONE. 9, : e92297 (2014).
Henrich, Birgit, Rumming, Madis, Sczyrba, Alexander, Velleuer, Eunike, Dietrich, Ralf, Gerlach, Wolfgang, Gombert, Michael, Rahn, Sebastian, Stoye, Jens, Borkhardt, Arndt, and Fischer, Ute. “Mycoplasma salivarium as a Dominant Coloniser of Fanconi Anaemia Associated Oral Carcinoma”. PLoS ONE 9.3 (2014): e92297.
Daten bereitgestellt von European Bioinformatics Institute (EBI)
4 Zitationen in Europe PMC
Daten bereitgestellt von Europe PubMed Central.
Mycoplasma promotes malignant transformation in vivo, and its DnaK, a bacterial chaperone protein, has broad oncogenic properties.
Zella D, Curreli S, Benedetti F, Krishnan S, Cocchi F, Latinovic OS, Denaro F, Romerio F, Djavani M, Charurat ME, Bryant JL, Tettelin H, Gallo RC., Proc Natl Acad Sci U S A 115(51), 2018
PMID: 30509983
Zella D, Curreli S, Benedetti F, Krishnan S, Cocchi F, Latinovic OS, Denaro F, Romerio F, Djavani M, Charurat ME, Bryant JL, Tettelin H, Gallo RC., Proc Natl Acad Sci U S A 115(51), 2018
PMID: 30509983
Dental Perspective of Rare Disease of Fanconi Anemia: Case Report with Review.
Goswami M, Bhushan U, Goswami M., Clin Med Insights Case Rep 9(), 2016
PMID: 27013901
Goswami M, Bhushan U, Goswami M., Clin Med Insights Case Rep 9(), 2016
PMID: 27013901
Fanconi anaemia: genetics, molecular biology, and cancer – implications for clinical management in children and adults.
Schneider M, Chandler K, Tischkowitz M, Meyer S., Clin Genet 88(1), 2015
PMID: 25307146
Schneider M, Chandler K, Tischkowitz M, Meyer S., Clin Genet 88(1), 2015
PMID: 25307146
Impaired immune response to Candida albicans in cells from Fanconi anemia patients.
Parodi A, Kalli F, Svahn J, Stroppiana G, De Rocco D, Terranova P, Dufour C, Fenoglio D, Cappelli E., Cytokine 73(1), 2015
PMID: 25769809
Parodi A, Kalli F, Svahn J, Stroppiana G, De Rocco D, Terranova P, Dufour C, Fenoglio D, Cappelli E., Cytokine 73(1), 2015
PMID: 25769809
59 References
Daten bereitgestellt von Europe PubMed Central.
The oral metagenome in health and disease.
Belda-Ferre P, Alcaraz LD, Cabrera-Rubio R, Romero H, Simon-Soro A, Pignatelli M, Mira A., ISME J 6(1), 2011
PMID: 21716308
Belda-Ferre P, Alcaraz LD, Cabrera-Rubio R, Romero H, Simon-Soro A, Pignatelli M, Mira A., ISME J 6(1), 2011
PMID: 21716308
Oral microbiome profiles: 16S rRNA pyrosequencing and microarray assay comparison.
Ahn J, Yang L, Paster BJ, Ganly I, Morris L, Pei Z, Hayes RB., PLoS ONE 6(7), 2011
PMID: 21829515
Ahn J, Yang L, Paster BJ, Ganly I, Morris L, Pei Z, Hayes RB., PLoS ONE 6(7), 2011
PMID: 21829515
Bacterial community variation in human body habitats across space and time.
Costello EK, Lauber CL, Hamady M, Fierer N, Gordon JI, Knight R., Science 326(5960), 2009
PMID: 19892944
Costello EK, Lauber CL, Hamady M, Fierer N, Gordon JI, Knight R., Science 326(5960), 2009
PMID: 19892944
Comparative analysis of human saliva microbiome diversity by barcoded pyrosequencing and cloning approaches.
Nasidze I, Quinque D, Li J, Li M, Tang K, Stoneking M., Anal. Biochem. 391(1), 2009
PMID: 19406095
Nasidze I, Quinque D, Li J, Li M, Tang K, Stoneking M., Anal. Biochem. 391(1), 2009
PMID: 19406095
Outcome of carbapenem resistant Klebsiella pneumoniae bloodstream infections.
Ben-David D, Kordevani R, Keller N, Tal I, Marzel A, Gal-Mor O, Maor Y, Rahav G., Clin. Microbiol. Infect. 18(1), 2011
PMID: 21722257
Ben-David D, Kordevani R, Keller N, Tal I, Marzel A, Gal-Mor O, Maor Y, Rahav G., Clin. Microbiol. Infect. 18(1), 2011
PMID: 21722257
Oral biofilms: molecular analysis, challenges, and future prospects in dental diagnostics.
Do T, Devine D, Marsh PD., Clin Cosmet Investig Dent 5(), 2013
PMID: 23674928
Do T, Devine D, Marsh PD., Clin Cosmet Investig Dent 5(), 2013
PMID: 23674928
A detailed analysis of 16S ribosomal RNA gene segments for the diagnosis of pathogenic bacteria.
Chakravorty S, Helb D, Burday M, Connell N, Alland D., J. Microbiol. Methods 69(2), 2007
PMID: 17391789
Chakravorty S, Helb D, Burday M, Connell N, Alland D., J. Microbiol. Methods 69(2), 2007
PMID: 17391789
Comparison of species richness estimates obtained using nearly complete fragments and simulated pyrosequencing-generated fragments in 16S rRNA gene-based environmental surveys.
Youssef N, Sheik CS, Krumholz LR, Najar FZ, Roe BA, Elshahed MS., Appl. Environ. Microbiol. 75(16), 2009
PMID: 19561178
Youssef N, Sheik CS, Krumholz LR, Najar FZ, Roe BA, Elshahed MS., Appl. Environ. Microbiol. 75(16), 2009
PMID: 19561178
Defining the healthy "core microbiome" of oral microbial communities.
Zaura E, Keijser BJ, Huse SM, Crielaard W., BMC Microbiol. 9(), 2009
PMID: 20003481
Zaura E, Keijser BJ, Huse SM, Crielaard W., BMC Microbiol. 9(), 2009
PMID: 20003481
Using high throughput sequencing to explore the biodiversity in oral bacterial communities.
Diaz PI, Dupuy AK, Abusleme L, Reese B, Obergfell C, Choquette L, Dongari-Bagtzoglou A, Peterson DE, Terzi E, Strausbaugh LD., Mol Oral Microbiol 27(3), 2012
PMID: 22520388
Diaz PI, Dupuy AK, Abusleme L, Reese B, Obergfell C, Choquette L, Dongari-Bagtzoglou A, Peterson DE, Terzi E, Strausbaugh LD., Mol Oral Microbiol 27(3), 2012
PMID: 22520388
Analyzing endodontic infections by deep coverage pyrosequencing.
Li L, Hsiao WW, Nandakumar R, Barbuto SM, Mongodin EF, Paster BJ, Fraser-Liggett CM, Fouad AF., J. Dent. Res. 89(9), 2010
PMID: 20519493
Li L, Hsiao WW, Nandakumar R, Barbuto SM, Mongodin EF, Paster BJ, Fraser-Liggett CM, Fouad AF., J. Dent. Res. 89(9), 2010
PMID: 20519493
Microbial transformation from normal oral microbiota to acute endodontic infections.
Hsiao WW, Li KL, Liu Z, Jones C, Fraser-Liggett CM, Fouad AF., BMC Genomics 13(), 2012
PMID: 22839737
Hsiao WW, Li KL, Liu Z, Jones C, Fraser-Liggett CM, Fouad AF., BMC Genomics 13(), 2012
PMID: 22839737
Periodontal microbial ecology.
Socransky SS, Haffajee AD., Periodontol. 2000 38(), 2005
PMID: 15853940
Socransky SS, Haffajee AD., Periodontol. 2000 38(), 2005
PMID: 15853940
Presence of Streptococcus infection in extra-oropharyngeal head and neck squamous cell carcinoma and its implication in carcinogenesis.
Shiga K, Tateda M, Saijo S, Hori T, Sato I, Tateno H, Matsuura K, Takasaka T, Miyagi T., Oncol. Rep. 8(2), 2001
PMID: 11182034
Shiga K, Tateda M, Saijo S, Hori T, Sato I, Tateno H, Matsuura K, Takasaka T, Miyagi T., Oncol. Rep. 8(2), 2001
PMID: 11182034
Microbial diversity in saliva of oral squamous cell carcinoma.
Pushalkar S, Mane SP, Ji X, Li Y, Evans C, Crasta OR, Morse D, Meagher R, Singh A, Saxena D., FEMS Immunol. Med. Microbiol. 61(3), 2011
PMID: 21205002
Pushalkar S, Mane SP, Ji X, Li Y, Evans C, Crasta OR, Morse D, Meagher R, Singh A, Saxena D., FEMS Immunol. Med. Microbiol. 61(3), 2011
PMID: 21205002
Comparison of oral microbiota in tumor and non-tumor tissues of patients with oral squamous cell carcinoma.
Pushalkar S, Ji X, Li Y, Estilo C, Yegnanarayana R, Singh B, Li X, Saxena D., BMC Microbiol. 12(), 2012
PMID: 22817758
Pushalkar S, Ji X, Li Y, Estilo C, Yegnanarayana R, Singh B, Li X, Saxena D., BMC Microbiol. 12(), 2012
PMID: 22817758
The salivary microbiota as a diagnostic indicator of oral cancer: a descriptive, non-randomized study of cancer-free and oral squamous cell carcinoma subjects.
Mager DL, Haffajee AD, Devlin PM, Norris CM, Posner MR, Goodson JM., J Transl Med 3(), 2005
PMID: 15987522
Mager DL, Haffajee AD, Devlin PM, Norris CM, Posner MR, Goodson JM., J Transl Med 3(), 2005
PMID: 15987522
High incidence of head and neck squamous cell carcinoma in patients with Fanconi anemia.
Kutler DI, Auerbach AD, Satagopan J, Giampietro PF, Batish SD, Huvos AG, Goberdhan A, Shah JP, Singh B., Arch. Otolaryngol. Head Neck Surg. 129(1), 2003
PMID: 12525204
Kutler DI, Auerbach AD, Satagopan J, Giampietro PF, Batish SD, Huvos AG, Goberdhan A, Shah JP, Singh B., Arch. Otolaryngol. Head Neck Surg. 129(1), 2003
PMID: 12525204
Squamous cell carcinomas of the head and neck in Fanconi anemia: risk, prevention, therapy, and the need for guidelines.
Scheckenbach K, Wagenmann M, Freund M, Schipper J, Hanenberg H., Klin Padiatr 224(3), 2012
PMID: 22504776
Scheckenbach K, Wagenmann M, Freund M, Schipper J, Hanenberg H., Klin Padiatr 224(3), 2012
PMID: 22504776
QIIME allows analysis of high-throughput community sequencing data.
Caporaso JG, Kuczynski J, Stombaugh J, Bittinger K, Bushman FD, Costello EK, Fierer N, Pena AG, Goodrich JK, Gordon JI, Huttley GA, Kelley ST, Knights D, Koenig JE, Ley RE, Lozupone CA, McDonald D, Muegge BD, Pirrung M, Reeder J, Sevinsky JR, Turnbaugh PJ, Walters WA, Widmann J, Yatsunenko T, Zaneveld J, Knight R., Nat. Methods 7(5), 2010
PMID: 20383131
Caporaso JG, Kuczynski J, Stombaugh J, Bittinger K, Bushman FD, Costello EK, Fierer N, Pena AG, Goodrich JK, Gordon JI, Huttley GA, Kelley ST, Knights D, Koenig JE, Ley RE, Lozupone CA, McDonald D, Muegge BD, Pirrung M, Reeder J, Sevinsky JR, Turnbaugh PJ, Walters WA, Widmann J, Yatsunenko T, Zaneveld J, Knight R., Nat. Methods 7(5), 2010
PMID: 20383131
Database indexing for production searches
AUTHOR UNKNOWN, 2008
AUTHOR UNKNOWN, 2008
DNA sequencing with chain-terminating inhibitors.
Sanger F, Nicklen S, Coulson AR., Proc. Natl. Acad. Sci. U.S.A. 74(12), 1977
PMID: 271968
Sanger F, Nicklen S, Coulson AR., Proc. Natl. Acad. Sci. U.S.A. 74(12), 1977
PMID: 271968
Sources of infection with Pseudomonas aeruginosa in patients with tracheostomy.
Lowbury EJ, Thom BT, Lilly HA, Babb JR, Whittall K., J. Med. Microbiol. 3(1), 1970
PMID: 4988647
Lowbury EJ, Thom BT, Lilly HA, Babb JR, Whittall K., J. Med. Microbiol. 3(1), 1970
PMID: 4988647
Assessment of microbial diversity in biofilms recovered from endotracheal tubes using culture dependent and independent approaches.
Vandecandelaere I, Matthijs N, Van Nieuwerburgh F, Deforce D, Vosters P, De Bus L, Nelis HJ, Depuydt P, Coenye T., PLoS ONE 7(6), 2012
PMID: 22693635
Vandecandelaere I, Matthijs N, Van Nieuwerburgh F, Deforce D, Vosters P, De Bus L, Nelis HJ, Depuydt P, Coenye T., PLoS ONE 7(6), 2012
PMID: 22693635
Community-based interference against integration of Pseudomonas aeruginosa into human salivary microbial biofilm.
He X, Hu W, He J, Guo L, Lux R, Shi W., Mol Oral Microbiol 26(6), 2011
PMID: 22053962
He X, Hu W, He J, Guo L, Lux R, Shi W., Mol Oral Microbiol 26(6), 2011
PMID: 22053962
Pharyngeal carriage of mycoplasma species in healthy young adults.
Kundsin RB, Praznik J., Am. J. Epidemiol. 86(3), 1967
PMID: 4866284
Kundsin RB, Praznik J., Am. J. Epidemiol. 86(3), 1967
PMID: 4866284
Mycoplasma salivarium in human gingival sulci.
Engel LD, Kenny GE., J. Periodont. Res. 5(3), 1970
PMID: 4254176
Engel LD, Kenny GE., J. Periodont. Res. 5(3), 1970
PMID: 4254176
Enumeration, isolation, and species identification of mycoplasmas in saliva sampled from the normal and pathological human oral cavity and antibody response to an oral mycoplasma (Mycoplasma salivarium).
Watanabe T, Matsuura M, Seto K., J. Clin. Microbiol. 23(6), 1986
PMID: 3711294
Watanabe T, Matsuura M, Seto K., J. Clin. Microbiol. 23(6), 1986
PMID: 3711294
Detection of Mycoplasma salivarium and Mycoplasma fermentans in synovial fluids of temporomandibular joints of patients with disorders in the joints.
Watanabe T, Shibata K, Yoshikawa T, Dong L, Hasebe A, Domon H, Kobayashi T, Totsuka Y., FEMS Immunol. Med. Microbiol. 22(3), 1998
PMID: 9848685
Watanabe T, Shibata K, Yoshikawa T, Dong L, Hasebe A, Domon H, Kobayashi T, Totsuka Y., FEMS Immunol. Med. Microbiol. 22(3), 1998
PMID: 9848685
Comparisons of subgingival microbial profiles of refractory periodontitis, severe periodontitis, and periodontal health using the human oral microbe identification microarray.
Colombo AP, Boches SK, Cotton SL, Goodson JM, Kent R, Haffajee AD, Socransky SS, Hasturk H, Van Dyke TE, Dewhirst F, Paster BJ., J. Periodontol. 80(9), 2009
PMID: 19722792
Colombo AP, Boches SK, Cotton SL, Goodson JM, Kent R, Haffajee AD, Socransky SS, Hasturk H, Van Dyke TE, Dewhirst F, Paster BJ., J. Periodontol. 80(9), 2009
PMID: 19722792
Submasseteric abscess caused by Mycoplasma salivarium infection.
Grisold AJ, Hoenigl M, Leitner E, Jakse K, Feierl G, Raggam RB, Marth E., J. Clin. Microbiol. 46(11), 2008
PMID: 18753349
Grisold AJ, Hoenigl M, Leitner E, Jakse K, Feierl G, Raggam RB, Marth E., J. Clin. Microbiol. 46(11), 2008
PMID: 18753349
Arthritis caused by Mycoplasma salivarium in hypogammaglobulinaemia.
So AK, Furr PM, Taylor-Robinson D, Webster AD., Br Med J (Clin Res Ed) 286(6367), 1983
PMID: 6402237
So AK, Furr PM, Taylor-Robinson D, Webster AD., Br Med J (Clin Res Ed) 286(6367), 1983
PMID: 6402237
Mycoplasma salivarium isolated from brain abscesses.
Orsted I, Gertsen JB, Schonheyder HC, Jensen JS, Nielsen H., Clin. Microbiol. Infect. 17(7), 2011
PMID: 21362100
Orsted I, Gertsen JB, Schonheyder HC, Jensen JS, Nielsen H., Clin. Microbiol. Infect. 17(7), 2011
PMID: 21362100
Mycoplasma salivarium detected in a microbial community with Candida glabrata in the biofilm of an occluded biliary stent.
Henrich B, Schmitt M, Bergmann N, Zanger K, Kubitz R, Haussinger D, Pfeffer K., J. Med. Microbiol. 59(Pt 2), 2009
PMID: 19815666
Henrich B, Schmitt M, Bergmann N, Zanger K, Kubitz R, Haussinger D, Pfeffer K., J. Med. Microbiol. 59(Pt 2), 2009
PMID: 19815666
Empyema caused by Mycoplasma salivarium.
Baracaldo R, Foltzer M, Patel R, Bourbeau P., J. Clin. Microbiol. 50(5), 2012
PMID: 22337977
Baracaldo R, Foltzer M, Patel R, Bourbeau P., J. Clin. Microbiol. 50(5), 2012
PMID: 22337977
The human oral microbiome.
Dewhirst FE, Chen T, Izard J, Paster BJ, Tanner AC, Yu WH, Lakshmanan A, Wade WG., J. Bacteriol. 192(19), 2010
PMID: 20656903
Dewhirst FE, Chen T, Izard J, Paster BJ, Tanner AC, Yu WH, Lakshmanan A, Wade WG., J. Bacteriol. 192(19), 2010
PMID: 20656903
Viable bacteria present within oral squamous cell carcinoma tissue.
Hooper SJ, Crean SJ, Lewis MA, Spratt DA, Wade WG, Wilson MJ., J. Clin. Microbiol. 44(5), 2006
PMID: 16672398
Hooper SJ, Crean SJ, Lewis MA, Spratt DA, Wade WG, Wilson MJ., J. Clin. Microbiol. 44(5), 2006
PMID: 16672398
A molecular analysis of the bacteria present within oral squamous cell carcinoma.
Hooper SJ, Crean SJ, Fardy MJ, Lewis MA, Spratt DA, Wade WG, Wilson MJ., J. Med. Microbiol. 56(Pt 12), 2007
PMID: 18033835
Hooper SJ, Crean SJ, Fardy MJ, Lewis MA, Spratt DA, Wade WG, Wilson MJ., J. Med. Microbiol. 56(Pt 12), 2007
PMID: 18033835
Analysis of the salivary microbiome using culture-independent techniques.
Lazarevic V, Whiteson K, Gaia N, Gizard Y, Hernandez D, Farinelli L, Osteras M, Francois P, Schrenzel J., J Clin Bioinforma 2(), 2012
PMID: 22300522
Lazarevic V, Whiteson K, Gaia N, Gizard Y, Hernandez D, Farinelli L, Osteras M, Francois P, Schrenzel J., J Clin Bioinforma 2(), 2012
PMID: 22300522
AUTHOR UNKNOWN, 0
rrndb: the Ribosomal RNA Operon Copy Number Database.
Klappenbach JA, Saxman PR, Cole JR, Schmidt TM., Nucleic Acids Res. 29(1), 2001
PMID: 11125085
Klappenbach JA, Saxman PR, Cole JR, Schmidt TM., Nucleic Acids Res. 29(1), 2001
PMID: 11125085
Streptococcus anginosus in head and neck squamous cell carcinoma: implication in carcinogenesis.
Tateda M, Shiga K, Saijo S, Sone M, Hori T, Yokoyama J, Matsuura K, Takasaka T, Miyagi T., Int. J. Mol. Med. 6(6), 2000
PMID: 11078831
Tateda M, Shiga K, Saijo S, Sone M, Hori T, Yokoyama J, Matsuura K, Takasaka T, Miyagi T., Int. J. Mol. Med. 6(6), 2000
PMID: 11078831
Streptococcus anginosus infection in oral cancer and its infection route.
Sasaki M, Yamaura C, Ohara-Nemoto Y, Tajika S, Kodama Y, Ohya T, Harada R, Kimura S., Oral Dis 11(3), 2005
PMID: 15888105
Sasaki M, Yamaura C, Ohara-Nemoto Y, Tajika S, Kodama Y, Ohya T, Harada R, Kimura S., Oral Dis 11(3), 2005
PMID: 15888105
Incidence and risk factors for infection in oral cancer patients undergoing different treatments protocols.
Panghal M, Kaushal V, Kadayan S, Yadav JP., BMC Oral Health 12(), 2012
PMID: 22817766
Panghal M, Kaushal V, Kadayan S, Yadav JP., BMC Oral Health 12(), 2012
PMID: 22817766
The microbiology of ventilator-associated pneumonia.
Park DR., Respir Care 50(6), 2005
PMID: 15913466
Park DR., Respir Care 50(6), 2005
PMID: 15913466
Impact of antifungal treatment on Candida-Pseudomonas interaction: a preliminary retrospective case-control study.
Nseir S, Jozefowicz E, Cavestri B, Sendid B, Di Pompeo C, Dewavrin F, Favory R, Roussel-Delvallez M, Durocher A., Intensive Care Med 33(1), 2006
PMID: 17115135
Nseir S, Jozefowicz E, Cavestri B, Sendid B, Di Pompeo C, Dewavrin F, Favory R, Roussel-Delvallez M, Durocher A., Intensive Care Med 33(1), 2006
PMID: 17115135
Development of novel real-time PCR assays for detection and differentiation of eleven medically important Aspergillus and Candida species in clinical specimens.
Schabereiter-Gurtner C, Selitsch B, Rotter ML, Hirschl AM, Willinger B., J. Clin. Microbiol. 45(3), 2007
PMID: 17251398
Schabereiter-Gurtner C, Selitsch B, Rotter ML, Hirschl AM, Willinger B., J. Clin. Microbiol. 45(3), 2007
PMID: 17251398
AUTHOR UNKNOWN, 0
The influence of sex, handedness, and washing on the diversity of hand surface bacteria.
Fierer N, Hamady M, Lauber CL, Knight R., Proc. Natl. Acad. Sci. U.S.A. 105(46), 2008
PMID: 19004758
Fierer N, Hamady M, Lauber CL, Knight R., Proc. Natl. Acad. Sci. U.S.A. 105(46), 2008
PMID: 19004758
Bacterial community variation in human body habitats across space and time.
Costello EK, Lauber CL, Hamady M, Fierer N, Gordon JI, Knight R., Science 326(5960), 2009
PMID: 19892944
Costello EK, Lauber CL, Hamady M, Fierer N, Gordon JI, Knight R., Science 326(5960), 2009
PMID: 19892944
Search and clustering orders of magnitude faster than BLAST.
Edgar RC., Bioinformatics 26(19), 2010
PMID: 20709691
Edgar RC., Bioinformatics 26(19), 2010
PMID: 20709691
PyNAST: a flexible tool for aligning sequences to a template alignment.
Caporaso JG, Bittinger K, Bushman FD, DeSantis TZ, Andersen GL, Knight R., Bioinformatics 26(2), 2009
PMID: 19914921
Caporaso JG, Bittinger K, Bushman FD, DeSantis TZ, Andersen GL, Knight R., Bioinformatics 26(2), 2009
PMID: 19914921
Chimeric 16S rRNA sequence formation and detection in Sanger and 454-pyrosequenced PCR amplicons.
Haas BJ, Gevers D, Earl AM, Feldgarden M, Ward DV, Giannoukos G, Ciulla D, Tabbaa D, Highlander SK, Sodergren E, Methe B, DeSantis TZ; Human Microbiome Consortium, Petrosino JF, Knight R, Birren BW., Genome Res. 21(3), 2011
PMID: 21212162
Haas BJ, Gevers D, Earl AM, Feldgarden M, Ward DV, Giannoukos G, Ciulla D, Tabbaa D, Highlander SK, Sodergren E, Methe B, DeSantis TZ; Human Microbiome Consortium, Petrosino JF, Knight R, Birren BW., Genome Res. 21(3), 2011
PMID: 21212162
Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy.
Wang Q, Garrity GM, Tiedje JM, Cole JR., Appl. Environ. Microbiol. 73(16), 2007
PMID: 17586664
Wang Q, Garrity GM, Tiedje JM, Cole JR., Appl. Environ. Microbiol. 73(16), 2007
PMID: 17586664
Species-level analysis of DNA sequence data from the NIH Human Microbiome Project.
Conlan S, Kong HH, Segre JA., PLoS ONE 7(10), 2012
PMID: 23071716
Conlan S, Kong HH, Segre JA., PLoS ONE 7(10), 2012
PMID: 23071716
Replacing suffix trees with enhanced suffix arrays
AUTHOR UNKNOWN, 2004
AUTHOR UNKNOWN, 2004
The SILVA ribosomal RNA gene database project: improved data processing and web-based tools.
Quast C, Pruesse E, Yilmaz P, Gerken J, Schweer T, Yarza P, Peplies J, Glockner FO., Nucleic Acids Res. 41(Database issue), 2012
PMID: 23193283
Quast C, Pruesse E, Yilmaz P, Gerken J, Schweer T, Yarza P, Peplies J, Glockner FO., Nucleic Acids Res. 41(Database issue), 2012
PMID: 23193283
AUTHOR UNKNOWN, 0
UniFrac: an effective distance metric for microbial community comparison.
Lozupone C, Lladser ME, Knights D, Stombaugh J, Knight R., ISME J 5(2), 2010
PMID: 20827291
Lozupone C, Lladser ME, Knights D, Stombaugh J, Knight R., ISME J 5(2), 2010
PMID: 20827291
Export
Markieren/ Markierung löschen
Markierte Publikationen
Web of Science
Dieser Datensatz im Web of Science®Quellen
PMID: 24642836
PubMed | Europe PMC
Suchen in