Alexander Sczyrba

asczyrba@techfak.uni-bielefeld.de
ORCID logo https://orcid.org/0000-0002-4405-3847

PEVZ-ID
17894

106 Publikationen

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  • [106]
    2024 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2985402
    Heyer, Robert, Hellwig, Patrick, Maus, Irena, Walke, Daniel, Schlüter, Andreas, Hassa, Julia, Sczyrba, Alexander, et al. 2024. “Breakdown of hardly degradable carbohydrates (lignocellulose) in a two-stage anaerobic digestion plant is favored in the main fermenter”. Water Research 250: 121020.
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  • [105]
    2023 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2977923 OA
    Nelkner, Johanna, Huang, Liren, Lin, Timo W., Schulz, Alexander, Osterholz, Benedikt, Henke, Christian, Blom, Jochen, Pühler, Alfred, Sczyrba, Alexander, and Schlüter, Andreas. 2023. “Abundance, classification and genetic potential of Thaumarchaeota in metagenomes of European agricultural soils: a meta-analysis”. Environmental Microbiome 18 (1): 26.
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  • [104]
    2023 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2983209 OA
    Hassa, Julia, Tubbesing, Tom Jonas, Maus, Irena, Heyer, Robert, Benndorf, Dirk, Effenberger, Mathias, Henke, Christian, et al. 2023. “Uncovering Microbiome Adaptations in a Full-Scale Biogas Plant: Insights from MAG-Centric Metagenomics and Metaproteomics”. Microorganisms 11 (10): 2412.
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  • [103]
    2023 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2984553
    Schimmler, Sonja, Altenhöner, Reinhard, Bernard, Lars, Fluck, Juliane, Klinger, Axel, Lorenz, Soeren, Mathiak, Brigitte, et al. 2023. “Base4NFDI - Basic Services for NFDI”. Proceedings of the Conference on Research Data Infrastructure 1.
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  • [102]
    2023 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2984552
    Hoffmann, Nils, Maus, Irena, Beier, Sebastian, Belmann, Peter, Krüger, Jan, Tauch, Andreas, Goesmann, Alexander, et al. 2023. “Embedding the de.NBI Cloud in the National Research Data Infrastructure Activities”. Proceedings of the Conference on Research Data Infrastructure 1.
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  • [101]
    2023 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2984551
    Förstner, Konrad U., Becker, Anke, Blom, Jochen, Bork, Peer, Clavel, Thomas, Dieckmann, Marius, Goesmann, Alexander, et al. 2023. “NFDI4Microbiota – national research data infrastructure for microbiota research”. Research Ideas and Outcomes 9.
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  • [100]
    2023 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2979860
    Wolf, Maximilian, Schallert, Kay, Knipper, Luca, Sickmann, Albert, Sczyrba, Alexander, Benndorf, Dirk, and Heyer, Robert. 2023. “Advances in the clinical use of metaproteomics”. Expert review of proteomics.
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  • [99]
    2023 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2968667
    Olo Ndela, Eric, Roux, Simon, Henke, Christian, Sczyrba, Alexander, Sime Ngando, Telesphore, Varsani, Arvind, and Enault, Francois. 2023. “Reekeekee- and roodoodooviruses, two different Microviridae clades constituted by the smallest DNA phages”. Virus Evolution 9 (1): veac123.
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  • [98]
    2022 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2969509
    Neri, Uri, Wolf, Yuri I., Roux, Simon, Camargo, Antonio Pedro, Lee, Benjamin, Kazlauskas, Darius, Chen, I. Min, et al. 2022. “Expansion of the global RNA virome reveals diverse clades of bacteriophages”. Cell 185 (21): 4023-4037.e18.
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  • [97]
    2022 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2969511
    Fremin, Brayon J., Bhatt, Ami S., Kyrpides, Nikos C., Sengupta, Aditi, Sczyrba, Alexander, Maria da Silva, Aline, Buchan, Alison, et al. 2022. “Thousands of small, novel genes predicted in global phage genomes”. Cell Reports 39 (12): 110984.
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  • [96]
    2022 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2967098
    Khesali Aghtaei, Hoda, Püttker, Sebastian, Maus, Irena, Heyer, Robert, Huang, Liren, Sczyrba, Alexander, Reichl, Udo, and Benndorf, Dirk. 2022. “Adaptation of a microbial community to demand-oriented biological methanation”. Biotechnology for Biofuels and Bioproducts 15 (1): 125.
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  • [95]
    2022 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2966901 OA
    Maus, Irena, Wibberg, Daniel, Belmann, Peter, Hahnke, Sarah, Huang, Liren, Spröer, Cathrin, Bunk, Boyke, et al. 2022. “The novel oligopeptide utilizing species Anaeropeptidivorans aminofermentans M3/9T, its role in anaerobic digestion and occurrence as deduced from large-scale fragment recruitment analyses”. Frontiers in Microbiology 13: 1032515.
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  • [94]
    2022 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2966286 OA
    Joshi, Akshay, Young, Diana, Huang, Liren, Mosberger, Lona, Munk, Bernhard, Vinzelj, Julia, Flad, Veronika, et al. 2022. “Effect of Growth Media on the Diversity of Neocallimastigomycetes from Non-Rumen Habitats”. Microorganisms 10 (10): 1972.
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  • [93]
    2022 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2965465 OA
    Young, Diana, Joshi, Akshay, Huang, Liren, Munk, Bernhard, Wurzbacher, Christian, Youssef, Noha H., Elshahed, Mostafa S., et al. 2022. “Simultaneous Metabarcoding and Quantification of Neocallimastigomycetes from Environmental Samples: Insights into Community Composition and Novel Lineages”. Microorganisms 10 (9): 1749.
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  • [92]
    2022 | Herausgeber*in Sammelwerk | Veröffentlicht | PUB-ID: 2963745 OA
    Sczyrba, Alexander, and German Network for Bioinformatics Infrastructure (de.NBI), eds. 2022. Development and Operation of the Federated de.NBI Cloud: Contributions of the German Network for Bioinformatics Infrastructure. Bielefeld: Center for Biotechnology, de.NBI Administration Office.
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  • [91]
    2022 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2962388
    Meyer, Fernando, Fritz, Adrian, Deng, Zhi-Luo, Koslicki, David, Lesker, Till Robin, Gurevich, Alexey, Robertson, Gary, et al. 2022. “Critical Assessment of Metagenome Interpretation: the second round of challenges”. Nature Methods 19: 429-440.
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  • [90]
    2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2950292 OA
    Blifernez-Klassen, Olga, Klassen, Viktor, Wibberg, Daniel, Cebeci, Enis, Henke, Christian, Rückert, Christian, Chaudhari, Swapnil, et al. 2021. “Phytoplankton consortia as a blueprint for mutually beneficial eukaryote-bacteria ecosystems based on the biocoenosis of Botryococcus consortia”. Scientific Reports 11 (1): 1726.
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  • [89]
    2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2957501 OA
    Brandt, David, Simunovic, Marina, Busche, Tobias, Haak, Markus, Belmann, Peter, Jünemann, Sebastian, Schulz, Tizian, et al. 2021. “Multiple Occurrences of a 168-Nucleotide Deletion in SARS-CoV-2 ORF8, Unnoticed by Standard Amplicon Sequencing and Variant Calling Pipelines”. Viruses 13 (9): 1870.
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  • [88]
    2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2956369
    Fritz, Adrian, Bremges, Andreas, Deng, Zhi-Luo, Lesker, Till Robin, Götting, Jasper, Ganzenmueller, Tina, Sczyrba, Alexander, Dilthey, Alexander, Klawonn, Frank, and McHardy, Alice Carolyn. 2021. “Haploflow: strain-resolved de novo assembly of viral genomes”. Genome Biology 22 (1): 212.
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  • [87]
    2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2960171
    Van Den Bossche, Tim, Kunath, Benoit J., Schallert, Kay, Schäpe, Stephanie S., Abraham, Paul E., Armengaud, Jean, Arntzen, Magnus Ø., et al. 2021. “Critical Assessment of MetaProteome Investigation (CAMPI): a multi-laboratory comparison of established workflows”. Nature Communications 12 (1): 7305.
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  • [86]
    2021 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2960900
    Leitner, Frauke, Carazo, Jose Maria, Bischof, Johanna, Haley, Natalie, Audergon, Pauline, Sorzano, Carlos Oscar, del Cano, Laura, et al. 2021. “EOSC-Life Report on the work of the initial demonstrators”. Presented at the .
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  • [85]
    2021 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2955512
    Aevarsson, Arnthor, Kaczorowska, Anna-Karina, Adalsteinsson, Bjorn Thor, Ahlqvist, Josefin, Al-Karadaghi, Salam, Altenbuchner, Joseph, Arsin, Hasan, et al. 2021. “Going to extremes - a metagenomic journey into the dark matter of life”. FEMS microbiology letters: fnab067.
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  • [84]
    2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2952275
    Meyer, Fernando, Lesker, Till-Robin, Koslicki, David, Fritz, Adrian, Gurevich, Alexey, Darling, Aaron E., Sczyrba, Alexander, Bremges, Andreas, and McHardy, Alice C. 2021. “Tutorial: assessing metagenomics software with the CAMI benchmarking toolkit”. Nature Protocols 16 (4): 1785–1801.
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  • [83]
    2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2951537 OA
    Tabacchioni, Silvia, Passato, Stefania, Ambrosino, Patrizia, Huang, Liren, Caldara, Marina, Cantale, Cristina, Hett, Jonas, et al. 2021. “Identification of Beneficial Microbial Consortia and Bioactive Compounds with Potential as Plant Biostimulants for a Sustainable Agriculture”. Microorganisms 9 (2): 426.
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  • [82]
    2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941645 OA
    Maus, Irena, Klocke, Michael, Derenkó, Jaqueline, Stolze, Yvonne, Beckstette, Michael, Jost, Carsten, Wibberg, Daniel, et al. 2020. “Impact of process temperature and organic loading rate on cellulolytic / hydrolytic biofilm microbiomes during biomethanation of ryegrass silage revealed by genome-centered metagenomics and metatranscriptomics”. Environmental Microbiome 15 (1): 7.
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  • [81]
    2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2953267
    Schulte-Schrepping, Jonas, Reusch, Nico, Paclik, Daniela, Baßler, Kevin, Schlickeiser, Stephan, Zhang, Bowen, Krämer, Benjamin, et al. 2020. “Severe COVID-19 Is Marked by a Dysregulated Myeloid Cell Compartment”. Cell 182 (6): 1419-1440.e23.
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  • [80]
    2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2944226 OA
    Rettenmaier, Regina, Schneider, Martina, Munk, Bernhard, Lebuhn, Michael, Jünemann, Sebastian, Sczyrba, Alexander, Maus, Irena, Zverlov, Vladimir, and Liebl, Wolfgang. 2020. “Importance of Defluviitalea raffinosedens for Hydrolytic Biomass Degradation in Co-Culture with Hungateiclostridium thermocellum”. Microorganisms 8 (6): 915.
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  • [79]
    2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2949597 OA
    Maus, Irena, Tubbesing, Tom Jonas, Wibberg, Daniel, Heyer, Robert, Hassa, Julia, Tomazetto, Geizecler, Huang, Liren, et al. 2020. “The Role of Petrimonas mucosa ING2-E5AT in Mesophilic Biogas Reactor Systems as Deduced from Multiomics Analyses”. Microorganisms 8 (12): 2024.
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  • [78]
    2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2948401 OA
    Moore, Marten, Wesemann, Corinna, Gossmann, Nikolaj, Sahm, Arne, Krüger, Jan, Sczyrba, Alexander, and Dietz, Karl-Josef. 2020. “ConCysFind: a pipeline tool to predict conserved amino acids of protein sequences across the plant kingdom”. BMC Bioinformatics 21 (1): 490.
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  • [77]
    2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941704
    Lesker, Till R, Durairaj, Abilash C, Galvez, Eric J C, Lagkouvardos, Ilias, Baines, John F, Clavel, Thomas, Sczyrba, Alexander, McHardy, Alice C, and Strowig, Till. 2020. “An Integrated Metagenome Catalog Reveals New Insights into the Murine Gut Microbiome.”. Cell reports 30 (9): 2909-2922.e6.
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  • [76]
    2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2933767
    Fritz, Adrian, Hofmann, Peter, Majda, Stephan, Dahms, Eik, Dröge, Johannes, Fiedler, Jessika, Lesker, Till R., et al. 2019. “CAMISIM: simulating metagenomes and microbial communities”. Microbiome 7 (1): 17.
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  • [75]
    2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2934798
    Pankoke, Helga, Maus, Irena, Loh, Gunnar, Huser, Andrea, Seifert, Jana, Tilker, Alexandra, Hark, Sarah, Sczyrba, Alexander, Pelzer, Stefan, and Kleinbolting, Jessica. 2019. “Evaluation of commercially available DNA extraction kits for the analysis of the broiler chicken cecal microbiota.”. FEMS microbiology letters.
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  • [74]
    2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2936223 OA
    Belmann, Peter, Fischer, Björn, Krüger, Jan, Procházka, Michal, Rasche, Helena, Prinz, Manuel, Hanussek, Maximilian, et al. 2019. “de.NBI Cloud federation through ELIXIR AAI”. F1000Research 8: 842.
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  • [73]
    2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2935923 OA
    Nelkner, Johanna, Henke, Christian, Lin, Timo Wentong, Pätzold, Wiebke, Hassa, Julia, Jaenicke, Sebastian, Grosch, Rita, Pühler, Alfred, Sczyrba, Alexander, and Schlüter, Andreas. 2019. “Effect of Long-Term Farming Practices on Agricultural Soil Microbiome Members Represented by Metagenomically Assembled Genomes (MAGs) and Their Predicted Plant-Beneficial Genes”. Genes 10 (6): 424.
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  • [72]
    2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2930593
    Linden, Mikael, Prochazka, Michal, Lappalainen, Ilkka, Bucik, Dominik, Vyskocil, Pavel, Kuba, Martin, Silén, Sami, et al. 2018. “Common ELIXIR Service for Researcher Authentication and Authorisation”. F1000Research 7: 1199.
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  • [71]
    2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2920723
    Meyer, Fernando, Hofmann, Peter, Belmann, Peter, Garrido-Oter, Ruben, Fritz, Adrian, Sczyrba, Alexander, and McHardy, Alice C. 2018. “AMBER: Assessment of Metagenome BinnERs”. GigaScience 7 (6): giy069.
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  • [70]
    2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2920777
    Celis, Juan Sebastián, Wibberg, Daniel, Ramírez-Portilla, Catalina, Rupp, Oliver, Sczyrba, Alexander, Winkler, Anika, Kalinowski, Jörn, and Wilke, Thomas. 2018. “Binning Enables Efficient Host Genome Reconstruction in Cnidarian Holobionts”. GigaScience 7 (7): giy075.
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  • [69]
    2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2920750
    Maus, Irena, Rumming, Madis, Bergmann, Ingo, Heeg, Kathrin, Pohl, Marcel, Nettmann, Edith, Jaenicke, Sebastian, et al. 2018. “Characterization of Bathyarchaeota genomes assembled from metagenomes of biofilms residing in mesophilic and thermophilic biogas reactors”. Biotechnology for Biofuels 11 (1): 167.
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  • [68]
    2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2915890
    Huang, Liren, Krüger, Jan, and Sczyrba, Alexander. 2018. “Analyzing large scale genomic data on the cloud with Sparkhit”. Bioinformatics 34 (9): 1457-1465.
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  • [67]
    2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2916929
    Stolze, Yvonne, Bremges, Andreas, Maus, Irena, Pühler, Alfred, Sczyrba, Alexander, and Schlüter, Andreas. 2018. “Targeted in situ metatranscriptomics for selected taxa from mesophilic and thermophilic biogas plants”. Microbial Biotechnology 11 (4): 667-679.
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  • [66]
    2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2914959
    da Schoren Costa, Pedro, Bolzan de Campos, Samanta, Albersmeier, Andreas, Dirksen, Paul, Pereira Dresseno, André Luis, Andrade Pais dos Santos, Odair José, Lima Milani, Karina Maria, et al. 2018. “Invasion ecology applied to inoculation of plant growth promoting bacteria through a novel SIMPER-PCA approach”. Plant and Soil 422 (1-2): 467-478.
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  • [65]
    2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2918275
    Fleming, E. J., Woyke, T., Donatello, A. R., Kuypers, M. M. M., Sczyrba, Alexander, Littmann, S., and Emerson, D. 2018. “Insights into the fundamental physiology of the uncultured Fe-oxidizing bacterium Leptothrix ochracea”. Applied and Environmental Microbiology 84 (9): e02239-17.
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  • [64]
    2017 | Zeitschriftenaufsatz | PUB-ID: 2913876
    Sczyrba, Alexander, Hofman, Peter, Belmann, Peter, Koslicki, David, Janssen, Stefan, Dröge, Johannes, Gregor, Ivan, et al. 2017. “Benchmark data sets, software results and reference data for the first CAMI challenge”. GigaScience Database.
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  • [63]
    2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2914367
    Sczyrba, Alexander, Hofmann, Peter, Belmann, Peter, Koslicki, David, Janssen, Stefan, Dröge, Johannes, Gregor, Ivan, et al. 2017. “Critical Assessment of Metagenome Interpretation—a benchmark of metagenomics software”. Nature Methods 14 (11): 1063-1071.
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  • [62]
    2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2909153 OA
    Yu, Jia, Blom, Jochen, Sczyrba, Alexander, and Goesmann, Alexander. 2017. “Rapid protein alignment in the cloud: HAMOND combines fast DIAMOND alignments with Hadoop parallelism”. Journal of Biotechnology 257: 58-60.
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  • [61]
    2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2915516 OA
    Maus, Irena, Bremges, Andreas, Stolze, Yvonne, Hahnke, Sarah, Cibis, Katharina G., Koeck, Daniela E., Kim, Yong S., et al. 2017. “Genomics and prevalence of bacterial and archaeal isolates from biogas-producing microbiomes”. Biotechnology for Biofuels 10 (1): 264.
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  • [60]
    2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2913556
    Jünemann, Sebastian, Kleinbölting, Nils, Jaenicke, Sebastian, Henke, Christian, Hassa, Julia, Nelkner, Johanna, Stolze, Yvonne, et al. 2017. “Bioinformatics for NGS-based metagenomics and the application to biogas research”. Journal of Biotechnology 261 (SI): 10-23.
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  • [59]
    2017 | Datenpublikation | PUB-ID: 2914921 OA
    Huang, Liren, Krüger, Jan, and Sczyrba, Alexander. 2017. Sparkhit evaluation data set. Bielefeld University.
    PUB | Dateien verfügbar | DOI
     
  • [58]
    2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2904836
    Heyer, R., Benndorf, D., Kohrs, F., De Vrieze, J., Boon, N., Hoffmann, M., Rapp, E., Schlüter, Andreas, Sczyrba, Alexander, and Reichl, U. 2016. “Proteotyping of biogas plant microbiomes separates biogas plants according to process temperature and reactor type”. Biotechnology for Biofuels 9 (1): 155.
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  • [57]
    2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2905260
    Maus, Irena, Koeck, Daniela E., Cibis, Katharina G., Hahnke, Sarah, Kim, Yong S., Langer, Thomas, Kreubel, Jana, et al. 2016. “Unraveling the microbiome of a thermophilic biogas plant by metagenome and metatranscriptome analysis complemented by characterization of bacterial and archaeal isolates”. Biotechnology for Biofuels 9 (1): 171.
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  • [56]
    2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2901729
    Bremges, Andreas, Singer, Esther, Woyke, Tanja, and Sczyrba, Alexander. 2016. “MeCorS: Metagenome-enabled error correction of single cell sequencing reads”. Bioinformatics 32 (14): 2199-2201.
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  • [55]
    2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2900928
    Nesme, Joseph, Achouak, Wafa, Agathos, Spiros, Bailey, Mark, Baldrian, Petr, Brunel, Dominique, Frostegard, Asa, et al. 2016. “Back to the future of soil metagenomics”. Frontiers in Microbiology 7: 73.
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  • [54]
    2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2904815 OA
    Stolze, Yvonne, Bremges, Andreas, Rumming, Madis, Henke, Christian, Maus, Irena, Pühler, Alfred, Sczyrba, Alexander, and Schlüter, Andreas. 2016. “Identification and genome reconstruction of abundant distinct taxa in microbiomes from one thermophilic and three mesophilic production-scale biogas plants”. Biotechnology for Biofuels 9 (1): 156.
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  • [53]
    2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2907633 OA
    Lux, Markus, Krüger, Jan, Rinke, Christian, Maus, Irena, Schlüter, Andreas, Woyke, Tanja, Sczyrba, Alexander, and Hammer, Barbara. 2016. “acdc – Automated Contamination Detection and Confidence estimation for single-cell genome data”. BMC Bioinformatics 17 (1): 543.
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  • [52]
    2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2903489
    Maus, Irena, Cibis, Katharina Gabriela, Bremges, Andreas, Stolze, Yvonne, Wibberg, Daniel, Tomazetto, Geizecler, Blom, Jochen, et al. 2016. “Genomic characterization of Defluviitoga tunisiensis L3, a key hydrolytic bacterium in a thermophilic biogas plant and its abundance as determined by metagenome fragment recruitment”. Journal of Biotechnology 232: 50-60.
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  • [51]
    2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2903302
    Wibberg, Daniel, Bremges, Andreas, Dammann-Kalinowski, Tanja, Maus, Irena, Igeño, Maria Isabel, Vogelsang, Ralph, König, Christoph, et al. 2016. “Finished genome sequence and methylome of the cyanide-degrading Pseudomonas pseudoalcaligenes strain CECT5344 as resolved by single-molecule real-time sequencing”. Journal of Biotechnology 232: 61-68.
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  • [50]
    2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2901418
    Campos, Samanta B., Lisboa, Bruno B., Camargo, Flavio A.O., Bayer, Cimelio, Sczyrba, Alexander, Dirksen, Paul, Albersmeier, Andreas, et al. 2016. “Soil suppressiveness and its relations with the microbial community in a Brazilian subtropical agroecosystem under different management systems”. Soil Biology and Biochemistry 96: 191-197.
    PUB | DOI | WoS
     
  • [49]
    2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2902190
    Stiefel, Fabian, Fischer, Simon, Sczyrba, Alexander, Otte, Kerstin, and Hesse, Friedemann. 2016. “miRNA profiling of high, low and non-producing CHO cells during biphasic fed-batch cultivation reveals process relevant targets for host cell engineering”. Journal of Biotechnology 225: 31-43.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [48]
    2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2901675
    Krahn, Thomas, Wibberg, Daniel, Maus, Irena, Winkler, Anika, Bontron, Séverine, Sczyrba, Alexander, Nordmann, Patrice, Pühler, Alfred, Poirel, Laurent, and Schlüter, Andreas. 2016. “Intraspecies transfer of the chromosomally encoded Acinetobacter baumannii blaNDM-1 carbapenemase gene.”. Antimicrobial Agents and Chemotherapy 60 (5): 3032-3040.
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  • [47]
    2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2904234
    Ortseifen, Vera, Stolze, Yvonne, Maus, Irena, Sczyrba, Alexander, Bremges, Andreas, Albaum, Stefan, Jaenicke, Sebastian, Fracowiak, Jochen, Pühler, Alfred, and Schlüter, Andreas. 2016. “An integrated metagenome and -proteome analysis of the microbial community residing in a biogas production plant”. Journal of Biotechnology 231: 268-279.
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  • [46]
    2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2764906 OA
    Bremges, Andreas, Maus, Irena, Belmann, Peter, Eikmeyer, Felix Gregor, Winkler, Anika, Albersmeier, Andreas, Pühler, Alfred, Schlüter, Andreas, and Sczyrba, Alexander. 2015. “Deeply sequenced metagenome and metatranscriptome of a biogas-producing microbial community from an agricultural production-scale biogas plant”. GigaScience 4 (1): 33.
    PUB | PDF | DOI | WoS | PubMed | Europe PMC
     
  • [45]
    2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2782501
    Belmann, Peter, Dröge, Johannes, Bremges, Andreas, McHardy, Alice C., Sczyrba, Alexander, and Barton, Michael D. 2015. “Bioboxes: standardised containers for interchangeable bioinformatics software”. GigaScience 4 (1): 47.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [44]
    2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2726156
    Paul, Blair G., Bagby, Sarah C., Czornyj, Elizabeth, Arambula, Diego, Handa, Sumit, Sczyrba, Alexander, Ghosh, Partho, Miller, Jeff F., and Valentine, David L. 2015. “Targeted diversity generation by intraterrestrial archaea and archaeal viruses”. Nature Communications 6 (1): 6585.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [43]
    2015 | Preprint | Veröffentlicht | PUB-ID: 2901613
    Lux, Markus, Hammer, Barbara, and Sczyrba, Alexander. 2015. “Automated Contamination Detection in Single-Cell Sequencing”. bioRxiv.
    PUB
     
  • [42]
    2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2762833
    Kohrs, Fabian, Wolter, Sophie, Benndorf, Dirk, Heyer, Robert, Hoffmann, Marcus, Rapp, Erdmann, Bremges, Andreas, Sczyrba, Alexander, Schlüter, Andreas, and Reichl, Udo. 2015. “Fractionation of biogas plant sludge material improves metaproteomic characterization to investigate metabolic activity of microbial communities”. Proteomics 15 (20): 3585-3589.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [41]
    2015 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2901466
    Osterholz, Benedikt, Wiebke, Pätzold, Fust, Annika, Rumming, Madis, Schlüter, Andreas, and Sczyrba, Alexander. 2015. “A Bioinformatics Pipeline for the Detection of β-lactamase Genes in Metagenome Sequence Data and its Application to Production-Scale Biogas Plants”. Presented at the 3rd International Symposium on the environmental Dimension of Antibiotic Resistance, Wernigerode , ed. Julius Kühn-Institut, Bundesforschungsinstitut für Kulturpflanzen Institut für Epidemiologie und Pathogendiagnostik.
    PUB
     
  • [40]
    2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2726183
    Field, Erin K., Sczyrba, Alexander, Lyman, Audrey E., Harris, Christopher C., Woyke, Tanja, Stepanauskas, Ramunas, and Emerson, David. 2015. “Genomic insights into the uncultivated marine Zetaproteobacteria at Loihi Seamount”. The ISME journal 9 (4): 857-870.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [39]
    2015 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2901612
    Lux, Markus, Sczyrba, Alexander, and Hammer, Barbara. 2015. “Automatic discovery of metagenomic structure”. In 2015 International Joint Conference on Neural Networks (IJCNN). Institute of Electrical & Electronics Engineers (IEEE).
    PUB | DOI
     
  • [38]
    2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2685992
    Piao, Hailan, Lachman, Medora, Malfatti, Stephanie, Sczyrba, Alexander, Knierim, Bernhard, Auer, Manfred, Tringe, Susannah Green, Mackie, Roderick Ian, Yeoman, Carl James, and Hess, Matthias. 2014. “Temporal dynamics of fibrolytic and methanogenic rumen microorganisms during in situ incubation of switchgrass determined by 16S rRNA gene profiling”. Frontiers in Microbiology 5 (307): 307.
    PUB | DOI | Download (ext.) | WoS | PubMed | Europe PMC
     
  • [37]
    2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2698163
    Heins, Richard A, Cheng, Xiaoliang, Nath, Sangeeta, Deng, Kai, Bowen, Benjamin P, Chivian, Dylan C, Datta, Supratim, et al. 2014. “Phylogenomically Guided Identification of Industrially Relevant GH1 β-Glucosidases through DNA Synthesis and Nanostructure-Initiator Mass Spectrometry”. ACS chemical biology 9 (9): 2082-2091.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [36]
    2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2654433
    Kamke, Janine, Rinke, Christian, Schwientek, Patrick, Mavromatis, Kostas, Ivanova, Natalia, Sczyrba, Alexander, Woyke, Tanja, and Hentschel, Ute. 2014. “The Candidate Phylum Poribacteria by Single-Cell Genomics: New Insights into Phylogeny, Cell-Compartmentation, Eukaryote-Like Repeat Proteins, and Other Genomic Features”. PLoS ONE 9 (1): e87353.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [35]
    2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2689051
    Ghylin, Trevor W., Garcia, Sarahi L., Moya, Francisco, Oyserman, Ben O., Schwientek, Patrick, Forest, Katrina T., Mutschler, James, et al. 2014. “Comparative single-cell genomics reveals potential ecological niches for the freshwater acI Actinobacteria lineage”. The ISME Journal 8 (12): 2503-2516.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [34]
    2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2672695
    Swan, Brandon K., Chaffin, Mark D., Martinez-Garcia, Manuel, Morrison, Hilary G., Field, Erin K., Poulton, Nicole J., Masland, E. Dashiell P., et al. 2014. “Genomic and metabolic diversity of marine group I thaumarchaeota in the mesopelagic of two subtropical gyres”. PloS one 9 (4): e95380.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [33]
    2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2665333
    Henrich, Birgit, Rumming, Madis, Sczyrba, Alexander, Velleuer, Eunike, Dietrich, Ralf, Gerlach, Wolfgang, Gombert, Michael, et al. 2014. “Mycoplasma salivarium as a Dominant Coloniser of Fanconi Anaemia Associated Oral Carcinoma”. PLoS ONE 9 (3): e92297.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [32]
    2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2662055
    Wibberg, Daniel, Luque-Almagro, Víctor M., Igeño, M. Isabel, Bremges, Andreas, Roldán, M. Dolores, Merchán, Faustino, Sáez, Lara P., et al. 2014. “Complete genome sequence of the cyanide-degrading bacterium Pseudomonas pseudoalcaligenes CECT5344”. Journal of biotechnology 175: 67-68.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [31]
    2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2638234
    Zaremba-Niedzwiedzka, Katarzyna, Viklund, Johan, Zhao, Weizhou, Ast, Jennifer, Sczyrba, Alexander, Woyke, Tanja, McMahon, Katherina, Bertilsson, Stefan, Stepanauskas, Ramunas, and Andersson, Siv Ge. 2013. “Single-cell genomics reveal low recombination frequencies in freshwater bacteria of the SAR11 clade”. Genome biology 14 (11): R130.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [30]
    2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2613567
    Rinke, Christian, Schwientek, Patrick, Sczyrba, Alexander, Ivanova, Natalia N, Anderson, Iain J, Cheng, Jan-Fang, Darling, Aaron, et al. 2013. “Insights into the phylogeny and coding potential of microbial dark matter”. Nature 499 (7459): 431-437.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [29]
    2013 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2623500
    Gisbrecht, Andrej, Hammer, Barbara, Mokbel, Bassam, and Sczyrba, Alexander. 2013. “Nonlinear dimensionality reduction for cluster identification in metagenomic samples”. In 17th International Conference on Information Visualisation IV 2013, ed. Ebad Banissi, 174-179. Piscataway, NJ: IEEE.
    PUB | DOI
     
  • [28]
    2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2563543
    Campbell, Alisha G., Campbell, James H., Schwientek, Patrick, Woyke, Tanja, Sczyrba, Alexander, Allman, Steve, Beall, Clifford J., Griffen, Ann, Leys, Eugene, and Podar, Mircea. 2013. “Multiple Single-Cell Genomes Provide Insight into Functions of Uncultured Deltaproteobacteria in the Human Oral Cavity”. PLoS ONE 8 (3): e59361.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [27]
    2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2563424
    Campbell, James H., O'Donoghue, Patrick, Campbell, Alisha G., Schwientek, Patrick, Sczyrba, Alexander, Woyke, Tanja, Söll, Dieter, and Podar, Mircea. 2013. “UGA is an additional glycine codon in uncultured SR1 bacteria from the human microbiota”. Proceedings of the National Academy of Sciences of the United States of America 110 (14): 5540-5545.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [26]
    2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2641352
    Kamke, Janine, Sczyrba, Alexander, Ivanova, Natalia, Schwientek, Patrick, Rinke, Christian, Mavromatis, Kostas, Woyke, Tanja, and Hentschel, Ute. 2013. “Single-cell genomics reveals complex carbohydrate degradation patterns in poribacterial symbionts of marine sponges”. The ISME journal 7 (12): 2287-2300.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [25]
    2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2613623
    Swan, Brandon K., Tupper, Ben, Sczyrba, Alexander, Lauro, Federico M., Martinez-Garcia, Manuel, González, José M., Luo, Haiwei, et al. 2013. “Prevalent genome streamlining and latitudinal divergence of planktonic bacteria in the surface ocean”. Proceedings of the National Academy of Sciences of the United States of America 110 (28): 11463-11468.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [24]
    2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2518330
    Garcia, Sarahi L, McMahon, Katherine D, Martinez-Garcia, Manuel, Srivastava, Abhishek, Sczyrba, Alexander, Stepanauskas, Ramunas, Grossart, Hans-Peter, Woyke, Tanja, and Warnecke, Falk. 2012. “Metabolic potential of a single cell belonging to one of the most abundant lineages in freshwater bacterioplankton”. The ISME journal 7 (1): 137-147.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [23]
    2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2547307
    El-Kalioby, Mohamed, Abouelhoda, Mohamed, Krüger, Jan, Giegerich, Robert, Sczyrba, Alexander, Wall, Dennis P, and Tonellato, Peter. 2012. “Personalized cloud-based bioinformatics services for research and education: use cases and the elasticHPC package”. BMC Bioinformatics 13 (Suppl 17): S22.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [22]
    2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2410148
    Woyke, Tanja, Sczyrba, Alexander, Lee, Janey, Rinke, Christian, Tighe, Damon, Clingenpeel, Scott, Malmstrom, Rex, Stepanauskas, Ramunas, and Cheng, Jan-Fang. 2011. “Decontamination of MDA Reagents for Single Cell Whole Genome Amplification”. PLoS ONE 6 (10): e26161.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [21]
    2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2351462
    Kim, Tae-Wan, Chokhawala, Harshal A., Hess, Matthias, Dana, Craig M., Baer, Zachary, Sczyrba, Alexander, Rubin, Edward M., Blanch, Harvey W., and Clark, Douglas S. 2011. “High-Throughput In Vitro Glycoside Hydrolase (HIGH) Screening for Enzyme Discovery”. Angewandte Chemie 123 (47): 11411-11414.
    PUB | DOI | PubMed | Europe PMC
     
  • [20]
    2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2329885
    Swan, Brandon K., Martinez-Garcia, Manuel, Preston, Christina M., Sczyrba, Alexander, Woyke, Tanja, Lamy, Dominique, Reinthaler, Thomas, et al. 2011. “Potential for Chemolithoautotrophy Among Ubiquitous Bacteria Lineages in the Dark Ocean”. Science 333 (6047): 1296-1300.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [19]
    2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2789582
    Sales, Christopher M., Mahendra, Shaily, Grostern, Ariel, Parales, Rebecca E, Goodwin, Lynne A, Woyke, Tanja, Nolan, Matt, et al. 2011. “Genome sequence of the 1,4-dioxane-degrading Pseudonocardia dioxanivorans strain CB1190”. Journal of Bacteriology 193 (17): 4549-4550.
    PUB | DOI | Download (ext.) | WoS | PubMed | Europe PMC | GenBank
     
  • [18]
    2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1991643
    Hess, M., Sczyrba, Alexander, Egan, R., Kim, T. W., Chokhawala, H., Schroth, G., Luo, S., et al. 2011. “Metagenomic discovery of biomass-degrading genes and genomes from cow rumen”. Science 331 (6016): 463-467.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [17]
    2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1991615
    Gilbert, J. A., Meyer, F., Antonopoulos, D., Balaji, P., Brown, C. T., Desai, N., Eisen, J. A., et al. 2010. “Meeting report: the terabase metagenomics workshop and the vision of an Earth microbiome project”. Stand Genomic Sci 3 (3): 243-248.
    PUB | DOI | PubMed | Europe PMC
     
  • [16]
    2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1784020 OA
    Lamprecht, Anna-Lena, Margaria, Tiziana, Steffen, Bernhard, Sczyrba, Alexander, Hartmeier, Sven, and Giegerich, Robert. 2008. “GeneFisher-P: variations of GeneFisher as processes in Bio-jETI”. BMC Bioinformatics 9 (Suppl 4): S13.
    PUB | PDF | DOI | WoS | PubMed | Europe PMC
     
  • [15]
    2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1588303
    Sczyrba, Alexander, Konermann, Susanne, and Giegerich, Robert. 2008. “Two interactive bioinformatics courses at the bielefeld university bioinformatics server”. BRIEFINGS IN BIOINFORMATICS 9 (3): 243-249.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [14]
    2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1599756 OA
    Spitzer, M, Lorkowski, S, Cullen, P, Sczyrba, Alexander, and Fuellen, Georg. 2006. “IsoSVM - Distinguishing isoforms and paralogs on the protein level”. BMC Bioinformatics 7 (1): 110.
    PUB | PDF | DOI | WoS | PubMed | Europe PMC
     
  • [13]
    2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773613 OA
    Sczyrba, Alexander, Beckstette, Michael, Brivanlou, Ali H., Giegerich, Robert, and Altmann, Curtis R. 2005. “XenDB: Full length cDNA prediction and cross species mapping in Xenopus laevis”. BMC Genomics 6 (1): 123.
    PUB | PDF | DOI | WoS | PubMed | Europe PMC
     
  • [12]
    2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2383529
    Beckstette, Michael, Mailänder, Jens T., Marhöfer, Richard J., Sczyrba, Alexander, Ohlebusch, Enno, Giegerich, Robert, and Selzer, Paul M. 2004. “Genlight: Interactive high-throughput sequence analysis and comparative genomics”. Journal of Integrative Bioinformatics 1 (1): 90-107.
    PUB | DOI
     
  • [11]
    2004 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2383536
    Beckstette, Michael, Sczyrba, Alexander, and Selzer, Paul M. 2004. “Genlight: Interactive high-throughput sequence analysis and comparative genomics”. In German Conference on Bioinformatics. GCB 2004 ; October 4 - 6, 2004, Bielefeld, Germany , ed. Robert Giegerich, 53:179-186. GI-Edition / Proceedings. Bonn: Gesellschaft für Informatik.
    PUB
     
  • [10]
    2004 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2383561
    Sczyrba, Alexander, Beckstette, Michael, Giegerich, Robert, and Altman, Curtis. 2004. “Identification of 10,500 Xenopus laevis Full Length Clones through EST Clustering and Sequence Analysis”. In German Conference on Bioinformatics 2004 : GCB 2004, October 4 - 6, 2004, Bielefeld, Germany , ed. Robert Giegerich and Jens Stoye, 53:6-7. GI-Edition / Proceedings. Bonn: Gesellschaft für Informatik.
    PUB
     
  • [9]
    2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1607400 OA
    Taher, L, Rinner, O, Garg, S, Sczyrba, Alexander, and Morgenstern, B. 2004. “AGenDA: gene prediction by cross-species sequence comparison”. Nucleic Acids Research 32 (Web Server): W305-W308.
    PUB | PDF | DOI | WoS | PubMed | Europe PMC
     
  • [8]
    2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1607394 OA
    Krüger, Jan, Sczyrba, Alexander, Kurtz, Stefan, and Giegerich, Robert. 2004. “e2g: an interactive web-based server for efficiently mapping large EST and cDNA sets to genomic sequences”. NUCLEIC ACIDS RESEARCH 32 (Web Server): W301-W304.
    PUB | PDF | DOI | WoS | PubMed | Europe PMC
     
  • [7]
    2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1610494
    Taher, L, Rinner, O, Garg, S, Sczyrba, Alexander, Brudno, M, Batzoglou, S, and Morgenstern, B. 2003. “AGenDA: homology-based gene prediction”. BIOINFORMATICS 19 (12): 1575-1577.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [6]
    2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773844 OA
    Sczyrba, Alexander, Krüger, Jan, Mersch, Henning, Kurtz, Stefan, and Giegerich, Robert. 2003. “RNA-related tools on the Bielefeld Bioinformatics Server”. Nucleic Acids Research 31 (13): 3767-3770.
    PUB | Dateien verfügbar | DOI | WoS | PubMed | Europe PMC
     
  • [5]
    2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1612470
    Morgenstern, B, Goel, S, Sczyrba, Alexander, and Dress, Andreas. 2003. “AltAVisT: Comparing alternative multiple sequence alignments”. BIOINFORMATICS 19 (3): 425-426.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [4]
    2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1609260
    Dondrup, M., Goesmann, Alexander, Bartels, D., Kalinowski, Jörn, Krause, L., Linke, Burkhard, Rupp, O., Sczyrba, Alexander, Pühler, Alfred, and Meyer, F. 2003. “EMMA: a platform for consistent storage and efficient analysis of microarray data”. JOURNAL OF BIOTECHNOLOGY 106 (2-3): 135-146.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [3]
    2001 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1897716
    Gopal, S., Schroeder, M., Pieper, U., Sczyrba, Alexander, Aytekin-Kurban, G., Bekiranov, S., Fajardo, J.E., et al. 2001. “Homology-based annotation yields 1,042 new candidate genes in the Drosophila melanogaster genome”. Nat Genet 27 (3): 337-340.
    PUB
     
  • [2]
    2001 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1616752
    Altmann, CR, Bell, E, Sczyrba, Alexander, Pun, J, Bekiranov, S, Gaasterland, T, and Brivanlou, AH. 2001. “Microarray-based analysis of early development in Xenopus laevis”. DEVELOPMENTAL BIOLOGY 236 (1): 64-75.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [1]
    2000 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1897767
    Gaasterland, T., Sczyrba, Alexander, Thomas, E., and Kurban, G. 2000. “MAGPIE/EGRET annotation of the 2.9-Mb Drosophila melanogaster Adh region”. Genome Res 10 (4): 502-510.
    PUB
     
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