Meeting report: the terabase metagenomics workshop and the vision of an Earth microbiome project

Gilbert JA, Meyer F, Antonopoulos D, Balaji P, Brown CT, Desai N, Eisen JA, Evers D, Field D, Feng W, Huson D, et al. (2010)
Stand Genomic Sci 3(3): 243-248.

Zeitschriftenaufsatz | Veröffentlicht | Englisch
Es wurden keine Dateien hochgeladen. Nur Publikationsnachweis!
Gilbert, J. A.; Meyer, F.; Antonopoulos, D.; Balaji, P.; Brown, C. T.; Desai, N.; Eisen, J. A.; Evers, D.; Field, D.; Feng, W.; Huson, D.; Jansson, J.
Abstract / Bemerkung
Between July 18(th) and 24(th) 2010, 26 leading microbial ecology, computation, bioinformatics and statistics researchers came together in Snowbird, Utah (USA) to discuss the challenge of how to best characterize the microbial world using next-generation sequencing technologies. The meeting was entitled "Terabase Metagenomics" and was sponsored by the Institute for Computing in Science (ICiS) summer 2010 workshop program. The aim of the workshop was to explore the fundamental questions relating to microbial ecology that could be addressed using advances in sequencing potential. Technological advances in next-generation sequencing platforms such as the Illumina HiSeq 2000 can generate in excess of 250 billion base pairs of genetic information in 8 days. Thus, the generation of a trillion base pairs of genetic information is becoming a routine matter. The main outcome from this meeting was the birth of a concept and practical approach to exploring microbial life on earth, the Earth Microbiome Project (EMP). Here we briefly describe the highlights of this meeting and provide an overview of the EMP concept and how it can be applied to exploration of the microbiome of each ecosystem on this planet.
Stand Genomic Sci
Page URI


Gilbert JA, Meyer F, Antonopoulos D, et al. Meeting report: the terabase metagenomics workshop and the vision of an Earth microbiome project. Stand Genomic Sci. 2010;3(3):243-248.
Gilbert, J. A., Meyer, F., Antonopoulos, D., Balaji, P., Brown, C. T., Desai, N., Eisen, J. A., et al. (2010). Meeting report: the terabase metagenomics workshop and the vision of an Earth microbiome project. Stand Genomic Sci, 3(3), 243-248.
Gilbert, J. A., Meyer, F., Antonopoulos, D., Balaji, P., Brown, C. T., Desai, N., Eisen, J. A., et al. 2010. “Meeting report: the terabase metagenomics workshop and the vision of an Earth microbiome project”. Stand Genomic Sci 3 (3): 243-248.
Gilbert, J. A., Meyer, F., Antonopoulos, D., Balaji, P., Brown, C. T., Desai, N., Eisen, J. A., Evers, D., Field, D., Feng, W., et al. (2010). Meeting report: the terabase metagenomics workshop and the vision of an Earth microbiome project. Stand Genomic Sci 3, 243-248.
Gilbert, J.A., et al., 2010. Meeting report: the terabase metagenomics workshop and the vision of an Earth microbiome project. Stand Genomic Sci, 3(3), p 243-248.
J.A. Gilbert, et al., “Meeting report: the terabase metagenomics workshop and the vision of an Earth microbiome project”, Stand Genomic Sci, vol. 3, 2010, pp. 243-248.
Gilbert, J.A., Meyer, F., Antonopoulos, D., Balaji, P., Brown, C.T., Desai, N., Eisen, J.A., Evers, D., Field, D., Feng, W., Huson, D., Jansson, J., Knight, R., Knight, J., Kolker, E., Konstantindis, K., Kostka, J., Kyrpides, N., Mackelprang, R., McHardy, A., Quince, C., Raes, J., Sczyrba, A., Shade, A., Stevens, R.: Meeting report: the terabase metagenomics workshop and the vision of an Earth microbiome project. Stand Genomic Sci. 3, 243-248 (2010).
Gilbert, J. A., Meyer, F., Antonopoulos, D., Balaji, P., Brown, C. T., Desai, N., Eisen, J. A., Evers, D., Field, D., Feng, W., Huson, D., Jansson, J., Knight, R., Knight, J., Kolker, E., Konstantindis, K., Kostka, J., Kyrpides, N., Mackelprang, R., McHardy, A., Quince, C., Raes, J., Sczyrba, Alexander, Shade, A., and Stevens, R. “Meeting report: the terabase metagenomics workshop and the vision of an Earth microbiome project”. Stand Genomic Sci 3.3 (2010): 243-248.

102 Zitationen in Europe PMC

Daten bereitgestellt von Europe PubMed Central.

A Novel Human Microbe-Disease Association Prediction Method Based on the Bidirectional Weighted Network.
Li H, Wang Y, Jiang J, Zhao H, Feng X, Zhao B, Wang L., Front Microbiol 10(), 2019
PMID: 31024478
A Bidirectional Label Propagation Based Computational Model for Potential Microbe-Disease Association Prediction.
Wang L, Wang Y, Li H, Feng X, Yuan D, Yang J., Front Microbiol 10(), 2019
PMID: 31024481
Fecal microbiota dysbiosis in macaques and humans within a shared environment.
Grant ET, Kyes RC, Kyes P, Trinh P, Ramirez V, Tanee T, Pinlaor P, Dangtakot R, Rabinowitz PM., PLoS One 14(5), 2019
PMID: 31083685
Selection, Succession, and Stabilization of Soil Microbial Consortia.
Zegeye EK, Brislawn CJ, Farris Y, Fansler SJ, Hofmockel KS, Jansson JK, Wright AT, Graham EB, Naylor D, McClure RS, Bernstein HC., mSystems 4(4), 2019
PMID: 31098394
Selection, Succession, and Stabilization of Soil Microbial Consortia.
Zegeye EK, Brislawn CJ, Farris Y, Fansler SJ, Hofmockel KS, Jansson JK, Wright AT, Graham EB, Naylor D, McClure RS, Bernstein HC., mSystems 4(4), 2019
PMID: 31120029
Trait-based analysis of the human skin microbiome.
Bewick S, Gurarie E, Weissman JL, Beattie J, Davati C, Flint R, Thielen P, Breitwieser F, Karig D, Fagan WF., Microbiome 7(1), 2019
PMID: 31277701
Diet Versus Phylogeny: a Comparison of Gut Microbiota in Captive Colobine Monkey Species.
Hale VL, Tan CL, Niu K, Yang Y, Knight R, Zhang Q, Cui D, Amato KR., Microb Ecol 75(2), 2018
PMID: 28735426
Toward the Drug Factory Microbiome: Microbial Community Variations in Antibiotic-Producing Clean Rooms.
Hamdy AM, El-Massry M, Kashef MT, Amin MA, Aziz RK., OMICS 22(2), 2018
PMID: 28873001
The relationship of cervical microbiota diversity with race and disparities in preterm birth.
Wheeler S, Pryor K, Antczak B, Truong T, Murtha A, Seed P., J Neonatal Perinatal Med 11(3), 2018
PMID: 30198877
Host and Microbiome Genome-Wide Association Studies: Current State and Challenges.
Awany D, Allali I, Dalvie S, Hemmings S, Mwaikono KS, Thomford NE, Gomez A, Mulder N, Chimusa ER., Front Genet 9(), 2018
PMID: 30723493
Modulation of the gut microbiota by metformin improves metabolic profiles in aged obese mice.
Lee H, Lee Y, Kim J, An J, Lee S, Kong H, Song Y, Lee CK, Kim K., Gut Microbes 9(2), 2018
PMID: 29157127
Earth Microbiome Project and Global Systems Biology.
Gilbert JA, Jansson JK, Knight R., mSystems 3(3), 2018
PMID: 29657969
Redundancy in Anaerobic Digestion Microbiomes during Disturbances by the Antibiotic Monensin.
Spirito CM, Daly SE, Werner JJ, Angenent LT., Appl Environ Microbiol 84(9), 2018
PMID: 29500266
A Genomic Outlook on Bioremediation: The Case of Arsenic Removal.
Plewniak F, Crognale S, Rossetti S, Bertin PN., Front Microbiol 9(), 2018
PMID: 29755441
The gut microbiome of nonhuman primates: Lessons in ecology and evolution.
Clayton JB, Gomez A, Amato K, Knights D, Travis DA, Blekhman R, Knight R, Leigh S, Stumpf R, Wolf T, Glander KE, Cabana F, Johnson TJ., Am J Primatol 80(6), 2018
PMID: 29862519
Associations Between Nutrition, Gut Microbiome, and Health in A Novel Nonhuman Primate Model.
Clayton JB, Al-Ghalith GA, Long HT, Tuan BV, Cabana F, Huang H, Vangay P, Ward T, Minh VV, Tam NA, Dat NT, Travis DA, Murtaugh MP, Covert H, Glander KE, Nadler T, Toddes B, Sha JCM, Singer R, Knights D, Johnson TJ., Sci Rep 8(1), 2018
PMID: 30042392
One Health Relationships Between Human, Animal, and Environmental Microbiomes: A Mini-Review.
Trinh P, Zaneveld JR, Safranek S, Rabinowitz PM., Front Public Health 6(), 2018
PMID: 30214898
Species-level bacterial community profiling of the healthy sinonasal microbiome using Pacific Biosciences sequencing of full-length 16S rRNA genes.
Earl JP, Adappa ND, Krol J, Bhat AS, Balashov S, Ehrlich RL, Palmer JN, Workman AD, Blasetti M, Sen B, Hammond J, Cohen NA, Ehrlich GD, Mell JC., Microbiome 6(1), 2018
PMID: 30352611
The bovine colostrum microbiome and its association with clinical mastitis.
Lima SF, Teixeira AGV, Lima FS, Ganda EK, Higgins CH, Oikonomou G, Bicalho RC., J Dairy Sci 100(4), 2017
PMID: 28161185
Food Waste to Energy: An Overview of Sustainable Approaches for Food Waste Management and Nutrient Recycling.
Paritosh K, Kushwaha SK, Yadav M, Pareek N, Chawade A, Vivekanand V., Biomed Res Int 2017(), 2017
PMID: 28293629
A Metataxonomic Approach Could Be Considered for Cattle Clinical Mastitis Diagnostics.
Oultram JW, Ganda EK, Boulding SC, Bicalho RC, Oikonomou G., Front Vet Sci 4(), 2017
PMID: 28344976
Organism and Microbiome Analysis: Techniques and Implications for Chronic Rhinosinusitis.
Halderman AA, Lane AP., Otolaryngol Clin North Am 50(3), 2017
PMID: 28318535
Microbiome Tools for Forensic Science.
Metcalf JL, Xu ZZ, Bouslimani A, Dorrestein P, Carter DO, Knight R., Trends Biotechnol 35(9), 2017
PMID: 28366290
Unraveling the environmental and anthropogenic drivers of bacterial community changes in the Estuary of Bilbao and its tributaries.
Aguirre M, Abad D, Albaina A, Cralle L, Goñi-Urriza MS, Estonba A, Zarraonaindia I., PLoS One 12(6), 2017
PMID: 28594872
The Genomic Observatories Metadatabase (GeOMe): A new repository for field and sampling event metadata associated with genetic samples.
Deck J, Gaither MR, Ewing R, Bird CE, Davies N, Meyer C, Riginos C, Toonen RJ, Crandall ED., PLoS Biol 15(8), 2017
PMID: 28771471
LRLSHMDA: Laplacian Regularized Least Squares for Human Microbe-Disease Association prediction.
Wang F, Huang ZA, Chen X, Zhu Z, Wen Z, Zhao J, Yan GY., Sci Rep 7(1), 2017
PMID: 28790448
Elucidation of complexity and prediction of interactions in microbial communities.
Zuñiga C, Zaramela L, Zengler K., Microb Biotechnol 10(6), 2017
PMID: 28925555
Primary and heterotrophic productivity relate to multikingdom diversity in a hypersaline mat.
Bernstein HC, Brislawn CJ, Dana K, Flores-Wentz T, Cory AB, Fansler SJ, Fredrickson JK, Moran JJ., FEMS Microbiol Ecol 93(10), 2017
PMID: 29045626
A communal catalogue reveals Earth's multiscale microbial diversity.
Thompson LR, Sanders JG, McDonald D, Amir A, Ladau J, Locey KJ, Prill RJ, Tripathi A, Gibbons SM, Ackermann G, Navas-Molina JA, Janssen S, Kopylova E, Vázquez-Baeza Y, González A, Morton JT, Mirarab S, Zech Xu Z, Jiang L, Haroon MF, Kanbar J, Zhu Q, Jin Song S, Kosciolek T, Bokulich NA, Lefler J, Brislawn CJ, Humphrey G, Owens SM, Hampton-Marcell J, Berg-Lyons D, McKenzie V, Fierer N, Fuhrman JA, Clauset A, Stevens RL, Shade A, Pollard KS, Goodwin KD, Jansson JK, Gilbert JA, Knight R, Earth Microbiome Project Consortium., Nature 551(7681), 2017
PMID: 29088705
Transient dynamics of competitive exclusion in microbial communities.
Louca S, Doebeli M., Environ Microbiol 18(6), 2016
PMID: 26404023
Ingestion of Milk Containing Very Low Concentration of Antimicrobials: Longitudinal Effect on Fecal Microbiota Composition in Preweaned Calves.
Van Vleck Pereira R, Lima S, Siler JD, Foditsch C, Warnick LD, Bicalho RC., PLoS One 11(1), 2016
PMID: 26808865
Back to the Future of Soil Metagenomics.
Nesme J, Achouak W, Agathos SN, Bailey M, Baldrian P, Brunel D, Frostegård Å, Heulin T, Jansson JK, Jurkevitch E, Kruus KL, Kowalchuk GA, Lagares A, Lappin-Scott HM, Lemanceau P, Le Paslier D, Mandic-Mulec I, Murrell JC, Myrold DD, Nalin R, Nannipieri P, Neufeld JD, O'Gara F, Parnell JJ, Pühler A, Pylro V, Ramos JL, Roesch LF, Schloter M, Schleper C, Sczyrba A, Sessitsch A, Sjöling S, Sørensen J, Sørensen SJ, Tebbe CC, Topp E, Tsiamis G, van Elsas JD, van Keulen G, Widmer F, Wagner M, Zhang T, Zhang X, Zhao L, Zhu YG, Vogel TM, Simonet P., Front Microbiol 7(), 2016
PMID: 26903960
The Thanatomicrobiome: A Missing Piece of the Microbial Puzzle of Death.
Javan GT, Finley SJ, Abidin Z, Mulle JG., Front Microbiol 7(), 2016
PMID: 26941736
RiboFR-Seq: a novel approach to linking 16S rRNA amplicon profiles to metagenomes.
Zhang Y, Ji P, Wang J, Zhao F., Nucleic Acids Res 44(10), 2016
PMID: 26984526
Moleculo Long-Read Sequencing Facilitates Assembly and Genomic Binning from Complex Soil Metagenomes.
White RA, Bottos EM, Roy Chowdhury T, Zucker JD, Brislawn CJ, Nicora CD, Fansler SJ, Glaesemann KR, Glass K, Jansson JK., mSystems 1(3), 2016
PMID: 27822530
Characterising the Canine Oral Microbiome by Direct Sequencing of Reverse-Transcribed rRNA Molecules.
McDonald JE, Larsen N, Pennington A, Connolly J, Wallis C, Rooks DJ, Hall N, McCarthy AJ, Allison HE., PLoS One 11(6), 2016
PMID: 27276347
The upper respiratory tract microbiome and its potential role in bovine respiratory disease and otitis media.
Lima SF, Teixeira AG, Higgins CH, Lima FS, Bicalho RC., Sci Rep 6(), 2016
PMID: 27363739
Microbiome-wide association studies link dynamic microbial consortia to disease.
Gilbert JA, Quinn RA, Debelius J, Xu ZZ, Morton J, Garg N, Jansson JK, Dorrestein PC, Knight R., Nature 535(7610), 2016
PMID: 27383984
Captivity humanizes the primate microbiome.
Clayton JB, Vangay P, Huang H, Ward T, Hillmann BM, Al-Ghalith GA, Travis DA, Long HT, Tuan BV, Minh VV, Cabana F, Nadler T, Toddes B, Murphy T, Glander KE, Johnson TJ, Knights D., Proc Natl Acad Sci U S A 113(37), 2016
PMID: 27573830
A new way to contemplate Darwin's tangled bank: how DNA barcodes are reconnecting biodiversity science and biomonitoring.
Hajibabaei M, Baird DJ, Fahner NA, Beiko R, Golding GB., Philos Trans R Soc Lond B Biol Sci 371(1702), 2016
PMID: 27481782
Limits to robustness and reproducibility in the demarcation of operational taxonomic units.
Schmidt TS, Matias Rodrigues JF, von Mering C., Environ Microbiol 17(5), 2015
PMID: 25156547
Assessing the global phylum level diversity within the bacterial domain: A review.
Youssef NH, Couger MB, McCully AL, Criado AE, Elshahed MS., J Adv Res 6(3), 2015
PMID: 26257925
Faster sequence homology searches by clustering subsequences.
Suzuki S, Kakuta M, Ishida T, Akiyama Y., Bioinformatics 31(8), 2015
PMID: 25432166
Prepartum and postpartum rumen fluid microbiomes: characterization and correlation with production traits in dairy cows.
Lima FS, Oikonomou G, Lima SF, Bicalho ML, Ganda EK, Filho JC, Lorenzo G, Trojacanec P, Bicalhoa RC., Appl Environ Microbiol 81(4), 2015
PMID: 25501481
Schistosome infections: an Indian perspective.
Kali A., J Clin Diagn Res 9(2), 2015
PMID: 25859459
Geospatial Resolution of Human and Bacterial Diversity with City-Scale Metagenomics.
Afshinnekoo E, Meydan C, Chowdhury S, Jaroudi D, Boyer C, Bernstein N, Maritz JM, Reeves D, Gandara J, Chhangawala S, Ahsanuddin S, Simmons A, Nessel T, Sundaresh B, Pereira E, Jorgensen E, Kolokotronis SO, Kirchberger N, Garcia I, Gandara D, Dhanraj S, Nawrin T, Saletore Y, Alexander N, Vijay P, Hénaff EM, Zumbo P, Walsh M, O'Mullan GD, Tighe S, Dudley JT, Dunaif A, Ennis S, O'Halloran E, Magalhaes TR, Boone B, Jones AL, Muth TR, Paolantonio KS, Alter E, Schadt EE, Garbarino J, Prill RJ, Carlton JM, Levy S, Mason CE., Cell Syst 1(1), 2015
PMID: 26594662
Changes in intestinal barrier function and gut microbiota in high-fat diet-fed rats are dynamic and region dependent.
Hamilton MK, Boudry G, Lemay DG, Raybould HE., Am J Physiol Gastrointest Liver Physiol 308(10), 2015
PMID: 25747351
Minimum entropy decomposition: unsupervised oligotyping for sensitive partitioning of high-throughput marker gene sequences.
Eren AM, Morrison HG, Lescault PJ, Reveillaud J, Vineis JH, Sogin ML., ISME J 9(4), 2015
PMID: 25325381
Altered microbiomes in bovine digital dermatitis lesions, and the gut as a pathogen reservoir.
Zinicola M, Lima F, Lima S, Machado V, Gomez M, Döpfer D, Guard C, Bicalho R., PLoS One 10(3), 2015
PMID: 25781328
Unusual biology across a group comprising more than 15% of domain Bacteria.
Brown CT, Hug LA, Thomas BC, Sharon I, Castelle CJ, Singh A, Wilkins MJ, Wrighton KC, Williams KH, Banfield JF., Nature 523(7559), 2015
PMID: 26083755
Primer and platform effects on 16S rRNA tag sequencing.
Tremblay J, Singh K, Fern A, Kirton ES, He S, Woyke T, Lee J, Chen F, Dangl JL, Tringe SG., Front Microbiol 6(), 2015
PMID: 26300854
Human Microbiome Engineering: The Future and Beyond.
Kali A., J Clin Diagn Res 9(9), 2015
PMID: 26500908
Cross-biome comparison of microbial association networks.
Faust K, Lima-Mendez G, Lerat JS, Sathirapongsasuti JF, Knight R, Huttenhower C, Lenaerts T, Raes J., Front Microbiol 6(), 2015
PMID: 26579106
Fizzy: feature subset selection for metagenomics.
Ditzler G, Morrison JC, Lan Y, Rosen GL., BMC Bioinformatics 16(), 2015
PMID: 26538306
Metagenomics: Retrospect and Prospects in High Throughput Age.
Kumar S, Krishnani KK, Bhushan B, Brahmane MP., Biotechnol Res Int 2015(), 2015
PMID: 26664751
Complete Genome Sequence of Acinetobacter baumannii ZW85-1.
Wang X, Zhang Z, Hao Q, Wu J, Xiao J, Jing H., Genome Announc 2(1), 2014
PMID: 24459253
Conditionally rare taxa disproportionately contribute to temporal changes in microbial diversity.
Shade A, Jones SE, Caporaso JG, Handelsman J, Knight R, Fierer N, Gilbert JA., MBio 5(4), 2014
PMID: 25028427
Computational integration of genomic traits into 16S rDNA microbiota sequencing studies.
Keller A, Horn H, Förster F, Schultz J., Gene 549(1), 2014
PMID: 25084126
Subsampled open-reference clustering creates consistent, comprehensive OTU definitions and scales to billions of sequences.
Rideout JR, He Y, Navas-Molina JA, Walters WA, Ursell LK, Gibbons SM, Chase J, McDonald D, Gonzalez A, Robbins-Pianka A, Clemente JC, Gilbert JA, Huse SM, Zhou HW, Knight R, Caporaso JG., PeerJ 2(), 2014
PMID: 25177538
The Earth Microbiome project: successes and aspirations.
Gilbert JA, Jansson JK, Knight R., BMC Biol 12(), 2014
PMID: 25184604
DNA extraction protocols cause differences in 16S rRNA amplicon sequencing efficiency but not in community profile composition or structure.
Rubin BE, Sanders JG, Hampton-Marcell J, Owens SM, Gilbert JA, Moreau CS., Microbiologyopen 3(6), 2014
PMID: 25257543
Metagenomic assessment of the eastern oyster-associated microbiota.
Chauhan A, Wafula D, Lewis DE, Pathak A., Genome Announc 2(5), 2014
PMID: 25342691
Metagenomic ventures into outer sequence space.
Dutilh BE., Bacteriophage 4(4), 2014
PMID: 26458273
Network-based drug discovery by integrating systems biology and computational technologies.
Leung EL, Cao ZW, Jiang ZH, Zhou H, Liu L., Brief Bioinform 14(4), 2013
PMID: 22877768
Unraveling the Complexities of Life Sciences Data.
Higdon R, Haynes W, Stanberry L, Stewart E, Yandl G, Howard C, Broomall W, Kolker N, Kolker E., Big Data 1(1), 2013
PMID: 27447037
Advancing our understanding of the human microbiome using QIIME.
Navas-Molina JA, Peralta-Sánchez JM, González A, McMurdie PJ, Vázquez-Baeza Y, Xu Z, Ursell LK, Lauber C, Zhou H, Song SJ, Huntley J, Ackermann GL, Berg-Lyons D, Holmes S, Caporaso JG, Knight R., Methods Enzymol 531(), 2013
PMID: 24060131
Unexpected diversity during community succession in the apple flower microbiome.
Shade A, McManus PS, Handelsman J., MBio 4(2), 2013
PMID: 23443006
Metagenome sequencing of prokaryotic microbiota collected from Byron Glacier, Alaska.
Choudhari S, Smith S, Owens S, Gilbert JA, Shain DH, Dial RJ, Grigoriev A., Genome Announc 1(2), 2013
PMID: 23516217
A meta-analysis of changes in bacterial and archaeal communities with time.
Shade A, Caporaso JG, Handelsman J, Knight R, Fierer N., ISME J 7(8), 2013
PMID: 23575374
Towards a predictive systems-level model of the human microbiome: progress, challenges, and opportunities.
Greenblum S, Chiu HC, Levy R, Carr R, Borenstein E., Curr Opin Biotechnol 24(4), 2013
PMID: 23623295
EMPeror: a tool for visualizing high-throughput microbial community data.
Vázquez-Baeza Y, Pirrung M, Gonzalez A, Knight R., Gigascience 2(1), 2013
PMID: 24280061
SitePainter: a tool for exploring biogeographical patterns.
Gonzalez A, Stombaugh J, Lauber CL, Fierer N, Knight R., Bioinformatics 28(3), 2012
PMID: 22171330
Advancing analytical algorithms and pipelines for billions of microbial sequences.
Gonzalez A, Knight R., Curr Opin Biotechnol 23(1), 2012
PMID: 22172529
Exploring the molecular basis of responses to light in marine diatoms.
Depauw FA, Rogato A, Ribera d'Alcalá M, Falciatore A., J Exp Bot 63(4), 2012
PMID: 22328904
The impact of the gut microbiota on human health: an integrative view.
Clemente JC, Ursell LK, Parfrey LW, Knight R., Cell 148(6), 2012
PMID: 22424233
Conceptualizing a Genomics Software Institute (GSI).
Gilbert JA, Catlett C, Desai N, Knight R, White O, Robbins R, Sankaran R, Sansone SA, Field D, Meyer F., Stand Genomic Sci 6(1), 2012
PMID: 22675605
Report of the 13(th) Genomic Standards Consortium Meeting, Shenzhen, China, March 4-7, 2012.
Gilbert JA, Bao Y, Wang H, Sansone SA, Edmunds SC, Morrison N, Meyer F, Schriml LM, Davies N, Sterk P, Wilkening J, Garrity GM, Field D, Robbins R, Smith DP, Mizrachi I, Moreau C., Stand Genomic Sci 6(2), 2012
PMID: 22768370
De novo characterization of the root transcriptome of a traditional Chinese medicinal plant Polygonum cuspidatum.
Hao D, Ma P, Mu J, Chen S, Xiao P, Peng Y, Huo L, Xu L, Sun C., Sci China Life Sci 55(5), 2012
PMID: 22645089
A case study for large-scale human microbiome analysis using JCVI's metagenomics reports (METAREP).
Goll J, Thiagarajan M, Abubucker S, Huttenhower C, Yooseph S, Methé BA., PLoS One 7(6), 2012
PMID: 22719821
Scaling metagenome sequence assembly with probabilistic de Bruijn graphs.
Pell J, Hintze A, Canino-Koning R, Howe A, Tiedje JM, Brown CT., Proc Natl Acad Sci U S A 109(33), 2012
PMID: 22847406
MOCAT: a metagenomics assembly and gene prediction toolkit.
Kultima JR, Sunagawa S, Li J, Chen W, Chen H, Mende DR, Arumugam M, Pan Q, Liu B, Qin J, Wang J, Wang J, Bork P., PLoS One 7(10), 2012
PMID: 23082188
A holistic approach to marine eco-systems biology.
Karsenti E, Acinas SG, Bork P, Bowler C, De Vargas C, Raes J, Sullivan M, Arendt D, Benzoni F, Claverie JM, Follows M, Gorsky G, Hingamp P, Iudicone D, Jaillon O, Kandels-Lewis S, Krzic U, Not F, Ogata H, Pesant S, Reynaud EG, Sardet C, Sieracki ME, Speich S, Velayoudon D, Weissenbach J, Wincker P, Tara Oceans Consortium., PLoS Biol 9(10), 2011
PMID: 22028628
The state of standards in genomic sciences.
Garrity GM., Stand Genomic Sci 5(3), 2011
PMID: 22675577
The first special issue of Standards in Genomic Sciences from the Genomic Standards Consortium.
Field D, Kottmann R, Sterk P., Stand Genomic Sci 3(3), 2010
PMID: 21304721

3 References

Daten bereitgestellt von Europe PubMed Central.

The minimum information about a genome sequence (MIGS) specification.
Field D, Garrity G, Gray T, Morrison N, Selengut J, Sterk P, Tatusova T, Thomson N, Allen MJ, Angiuoli SV, Ashburner M, Axelrod N, Baldauf S, Ballard S, Boore J, Cochrane G, Cole J, Dawyndt P, De Vos P, DePamphilis C, Edwards R, Faruque N, Feldman R, Gilbert J, Gilna P, Glockner FO, Goldstein P, Guralnick R, Haft D, Hancock D, Hermjakob H, Hertz-Fowler C, Hugenholtz P, Joint I, Kagan L, Kane M, Kennedy J, Kowalchuk G, Kottmann R, Kolker E, Kravitz S, Kyrpides N, Leebens-Mack J, Lewis SE, Li K, Lister AL, Lord P, Maltsev N, Markowitz V, Martiny J, Methe B, Mizrachi I, Moxon R, Nelson K, Parkhill J, Proctor L, White O, Sansone SA, Spiers A, Stevens R, Swift P, Taylor C, Tateno Y, Tett A, Turner S, Ussery D, Vaughan B, Ward N, Whetzel T, San Gil I, Wilson G, Wipat A., Nat. Biotechnol. 26(5), 2008
PMID: 18464787

The Earth Microbiome Project: Meeting report of the “1st EMP meeting on sample selection and acquisition” at Argonne National Laboratory October 6th 2010.
Gilbert J, Meyer F, Jansson J, Gordon J, Pace N, Tiedje J, Ley R, Fierer N, Field D, Kyrpides N., 2010

Markieren/ Markierung löschen
Markierte Publikationen

Open Data PUB


PMID: 21304727
PubMed | Europe PMC

Suchen in

Google Scholar