Multiple Single-Cell Genomes Provide Insight into Functions of Uncultured Deltaproteobacteria in the Human Oral Cavity
Campbell AG, Campbell JH, Schwientek P, Woyke T, Sczyrba A, Allman S, Beall CJ, Griffen A, Leys E, Podar M (2013)
PLoS ONE 8(3): e59361.
Zeitschriftenaufsatz
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Autor*in
Campbell, Alisha G.;
Campbell, James H.;
Schwientek, PatrickUniBi;
Woyke, Tanja;
Sczyrba, AlexanderUniBi 
;
Allman, Steve;
Beall, Clifford J.;
Griffen, Ann;
Leys, Eugene;
Podar, Mircea
;
Allman, Steve;
Beall, Clifford J.;
Griffen, Ann;
Leys, Eugene;
Podar, MirceaEinrichtung
Abstract / Bemerkung
Despite a long history of investigation, many bacteria associated with the human oral cavity have yet to be cultured. Studies that correlate the presence or abundance of uncultured species with oral health or disease highlight the importance of these community members. Thus, we sequenced several single-cell genomic amplicons from Desulfobulbus and Desulfovibrio (class Deltaproteobacteria) to better understand their function within the human oral community and their association with periodontitis, as well as other systemic diseases. Genomic data from oral Desulfobulbus and Desulfovibrio species were compared to other available deltaproteobacterial genomes, including from a subset of host-associated species. While both groups share a large number of genes with other environmental Deltaproteobacteria genomes, they encode a wide array of unique genes that appear to function in survival in a host environment. Many of these genes are similar to virulence and host adaptation factors of known human pathogens, suggesting that the oral Deltaproteobacteria have the potential to play a role in the etiology of periodontal disease.
Erscheinungsjahr
2013
Zeitschriftentitel
PLoS ONE
Band
8
Ausgabe
3
Art.-Nr.
e59361
ISSN
1932-6203
Page URI
https://pub.uni-bielefeld.de/record/2563543
Zitieren
Campbell AG, Campbell JH, Schwientek P, et al. Multiple Single-Cell Genomes Provide Insight into Functions of Uncultured Deltaproteobacteria in the Human Oral Cavity. PLoS ONE. 2013;8(3): e59361.
Campbell, A. G., Campbell, J. H., Schwientek, P., Woyke, T., Sczyrba, A., Allman, S., Beall, C. J., et al. (2013). Multiple Single-Cell Genomes Provide Insight into Functions of Uncultured Deltaproteobacteria in the Human Oral Cavity. PLoS ONE, 8(3), e59361. doi:10.1371/journal.pone.0059361
Campbell, Alisha G., Campbell, James H., Schwientek, Patrick, Woyke, Tanja, Sczyrba, Alexander, Allman, Steve, Beall, Clifford J., Griffen, Ann, Leys, Eugene, and Podar, Mircea. 2013. “Multiple Single-Cell Genomes Provide Insight into Functions of Uncultured Deltaproteobacteria in the Human Oral Cavity”. PLoS ONE 8 (3): e59361.
Campbell, A. G., Campbell, J. H., Schwientek, P., Woyke, T., Sczyrba, A., Allman, S., Beall, C. J., Griffen, A., Leys, E., and Podar, M. (2013). Multiple Single-Cell Genomes Provide Insight into Functions of Uncultured Deltaproteobacteria in the Human Oral Cavity. PLoS ONE 8:e59361.
Campbell, A.G., et al., 2013. Multiple Single-Cell Genomes Provide Insight into Functions of Uncultured Deltaproteobacteria in the Human Oral Cavity. PLoS ONE, 8(3): e59361.
A.G. Campbell, et al., “Multiple Single-Cell Genomes Provide Insight into Functions of Uncultured Deltaproteobacteria in the Human Oral Cavity”, PLoS ONE, vol. 8, 2013, : e59361.
Campbell, A.G., Campbell, J.H., Schwientek, P., Woyke, T., Sczyrba, A., Allman, S., Beall, C.J., Griffen, A., Leys, E., Podar, M.: Multiple Single-Cell Genomes Provide Insight into Functions of Uncultured Deltaproteobacteria in the Human Oral Cavity. PLoS ONE. 8, : e59361 (2013).
Campbell, Alisha G., Campbell, James H., Schwientek, Patrick, Woyke, Tanja, Sczyrba, Alexander, Allman, Steve, Beall, Clifford J., Griffen, Ann, Leys, Eugene, and Podar, Mircea. “Multiple Single-Cell Genomes Provide Insight into Functions of Uncultured Deltaproteobacteria in the Human Oral Cavity”. PLoS ONE 8.3 (2013): e59361.
Daten bereitgestellt von European Bioinformatics Institute (EBI)
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Griffen AL, Beall CJ, Campbell JH, Firestone ND, Kumar PS, Yang ZK, Podar M, Leys EJ., ISME J 6(6), 2011
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Kumar PS, Griffen AL, Moeschberger ML, Leys EJ., J. Clin. Microbiol. 43(8), 2005
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Activity of sulfate-reducing bacteria in human periodontal pocket
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Sulfate-reducing bacteria in association with human periodontitis
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Quantitative analysis of three hydrogenotrophic microbial groups, methanogenic archaea, sulfate-reducing bacteria, and acetogenic bacteria, within plaque biofilms associated with human periodontal disease.
Vianna ME, Holtgraewe S, Seyfarth I, Conrads G, Horz HP., J. Bacteriol. 190(10), 2008
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New bacterial species associated with chronic periodontitis.
Kumar PS, Griffen AL, Barton JA, Paster BJ, Moeschberger ML, Leys EJ., J. Dent. Res. 82(5), 2003
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Complete genome sequence of Desulfobulbus propionicus type strain (1pr3(T))
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Isolation of Desulfomicrobium orale sp nov and Desulfovibrio strain NY682, oral sulfate-reducing bacteria involved in human periodontal disease
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Multiplex PCR for Detection and Typing of Porcine Circoviruses.
Ouardani M, Wilson L, Jette R, Montpetit C, Dea S., J. Clin. Microbiol. 38(4), 2000
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Pimentel JD, Chan RC., J. Clin. Microbiol. 45(8), 2007
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Characterization of the Desulfovibrio desulfuricans ATCC 27774 DsrMKJOP complex--a membrane-bound redox complex involved in the sulfate respiratory pathway.
Pires RH, Venceslau SS, Morais F, Teixeira M, Xavier AV, Pereira IA., Biochemistry 45(1), 2006
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Bacterial toxin-antitoxin systems: more than selfish entities?
Van Melderen L, Saavedra De Bast M., PLoS Genet. 5(3), 2009
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Cascales E, Christie PJ., Nat. Rev. Microbiol. 1(2), 2003
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Clock SA, Planet PJ, Perez BA, Figurski DH., J. Bacteriol. 190(3), 2007
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Fernandez L, Marquez I, Guijarro JA., Appl. Environ. Microbiol. 70(9), 2004
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Fuller TE, Kennedy MJ, Lowery DE., Microb. Pathog. 29(1), 2000
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Murakami S, Nakashima R, Yamashita E, Yamaguchi A., Nature 419(6907), 2002
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Cypionka H., Annu. Rev. Microbiol. 54(), 2000
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Wang R, Kaplan A, Guo L, Shi W, Zhou X, Lux R, He X., Microb. Ecol. 64(1), 2012
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Capestany CA, Tribble GD, Maeda K, Demuth DR, Lamont RJ., J. Bacteriol. 190(4), 2007
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Loughlin MF, Arandhara V, Okolie C, Aldsworth TG, Jenks PJ., Microb. Pathog. 46(1), 2008
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Winther-Larsen HC, Hegge FT, Wolfgang M, Hayes SF, van Putten JP, Koomey M., Proc. Natl. Acad. Sci. U.S.A. 98(26), 2001
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Ajdic D, McShan WM, McLaughlin RE, Savic G, Chang J, Carson MB, Primeaux C, Tian R, Kenton S, Jia H, Lin S, Qian Y, Li S, Zhu H, Najar F, Lai H, White J, Roe BA, Ferretti JJ., Proc. Natl. Acad. Sci. U.S.A. 99(22), 2002
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The biochemistry and genetics of capsular polysaccharide production in bacteria.
Roberts IS., Annu. Rev. Microbiol. 50(), 1996
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Characterization of the determinant (traB) encoding sex pheromone shutdown by the hemolysin/bacteriocin plasmid pAD1 in Enterococcus faecalis.
An FY, Clewell DB., Plasmid 31(2), 1994
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Reddy M., J. Bacteriol. 189(1), 2006
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Worley MJ, Ching KH, Heffron F., Mol. Microbiol. 36(3), 2000
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Garcia-Calderon CB, Casadesus J, Ramos-Morales F., J. Bacteriol. 189(18), 2007
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Frye J, Karlinsey JE, Felise HR, Marzolf B, Dowidar N, McClelland M, Hughes KT., J. Bacteriol. 188(6), 2006
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FNR is a global regulator of virulence and anaerobic metabolism in Salmonella enterica serovar Typhimurium (ATCC 14028s).
Fink RC, Evans MR, Porwollik S, Vazquez-Torres A, Jones-Carson J, Troxell B, Libby SJ, McClelland M, Hassan HM., J. Bacteriol. 189(6), 2007
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Meng G, Spahich N, Kenjale R, Waksman G, St Geme JW 3rd., EMBO J. 30(18), 2011
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Mougous JD, Gifford CA, Ramsdell TL, Mekalanos JJ., Nat. Cell Biol. 9(7), 2007
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Improved 16S rRNA-targeted probe set for analysis of sulfate-reducing bacteria by fluorescence in situ hybridization
AUTHOR UNKNOWN, 2007
AUTHOR UNKNOWN, 2007
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Stoecker K, Dorninger C, Daims H, Wagner M., Appl. Environ. Microbiol. 76(3), 2009
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Stepanauskas R, Sieracki ME., Proc. Natl. Acad. Sci. U.S.A. 104(21), 2007
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Rodrigue S, Malmstrom RR, Berlin AM, Birren BW, Henn MR, Chisholm SW., PLoS ONE 4(9), 2009
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Tamariz J, Voynarovska K, Prinz M, Caragine T., J. Forensic Sci. 51(4), 2006
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16S ribosomal DNA amplification for phylogenetic study.
Weisburg WG, Barns SM, Pelletier DA, Lane DJ., J. Bacteriol. 173(2), 1991
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Wang Q, Garrity GM, Tiedje JM, Cole JR., Appl. Environ. Microbiol. 73(16), 2007
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Potential for chemolithoautotrophy among ubiquitous bacteria lineages in the dark ocean.
Swan BK, Martinez-Garcia M, Preston CM, Sczyrba A, Woyke T, Lamy D, Reinthaler T, Poulton NJ, Masland ED, Gomez ML, Sieracki ME, DeLong EF, Herndl GJ, Stepanauskas R., Science 333(6047), 2011
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Zerbino DR, Birney E., Genome Res. 18(5), 2008
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Detection of gene pathways with predictive power for breast cancer prognosis.
Ma S, Kosorok MR., BMC Bioinformatics 11(), 2010
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Markowitz VM, Chen IM, Palaniappan K, Chu K, Szeto E, Grechkin Y, Ratner A, Jacob B, Huang J, Williams P, Huntemann M, Anderson I, Mavromatis K, Ivanova NN, Kyrpides NC., Nucleic Acids Res. 40(Database issue), 2012
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The RAST Server: rapid annotations using subsystems technology.
Aziz RK, Bartels D, Best AA, DeJongh M, Disz T, Edwards RA, Formsma K, Gerdes S, Glass EM, Kubal M, Meyer F, Olsen GJ, Olson R, Osterman AL, Overbeek RA, McNeil LK, Paarmann D, Paczian T, Parrello B, Pusch GD, Reich C, Stevens R, Vassieva O, Vonstein V, Wilke A, Zagnitko O., BMC Genomics 9(), 2008
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Assembling the marine metagenome, one cell at a time.
Woyke T, Xie G, Copeland A, Gonzalez JM, Han C, Kiss H, Saw JH, Senin P, Yang C, Chatterji S, Cheng JF, Eisen JA, Sieracki ME, Stepanauskas R., PLoS ONE 4(4), 2009
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Richter M, Rossello-Mora R., Proc. Natl. Acad. Sci. U.S.A. 106(45), 2009
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