e2g: an interactive web-based server for efficiently mapping large EST and cDNA sets to genomic sequences
Krüger J, Sczyrba A, Kurtz S, Giegerich R (2004)
NUCLEIC ACIDS RESEARCH 32(Web Server): W301-W304.
Zeitschriftenaufsatz
| Veröffentlicht | Englisch
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Abstract / Bemerkung
e2g is a web-based server which efficiently maps large expressed sequence tag (EST) and cDNA datasets to genomic DNA. It significantly extends the volume of data that can be mapped in reasonable time, and makes this improved efficiency available as a web service. Our server hosts large collections of EST sequences (e.g. 4.1 million mouse ESTs of 1.87 Gb) in precomputed indexed data structures for efficient sequence comparison. The user can upload a genomic DNA sequence of interest and rapidly compare this to the complete collection of ESTs on the server. This delivers a mapping of the ESTs on the genomic DNA. The e2g web interface provides a graphical overview of the mapping. Alignments of the mapped EST regions with parts of the genomic sequence are visualized. Zooming functions allow the user to interactively explore the results. Mapped sequences can be downloaded for further analysis. e2g is available on the Bielefeld University Bioinformatics Server at http://bibiserv.techfak.uni-bielefeld.de/e2g/.
Erscheinungsjahr
2004
Zeitschriftentitel
NUCLEIC ACIDS RESEARCH
Band
32
Ausgabe
Web Server
Seite(n)
W301-W304
ISSN
0305-1048
eISSN
1362-4962
Page URI
https://pub.uni-bielefeld.de/record/1607394
Zitieren
Krüger J, Sczyrba A, Kurtz S, Giegerich R. e2g: an interactive web-based server for efficiently mapping large EST and cDNA sets to genomic sequences. NUCLEIC ACIDS RESEARCH. 2004;32(Web Server):W301-W304.
Krüger, J., Sczyrba, A., Kurtz, S., & Giegerich, R. (2004). e2g: an interactive web-based server for efficiently mapping large EST and cDNA sets to genomic sequences. NUCLEIC ACIDS RESEARCH, 32(Web Server), W301-W304. https://doi.org/10.1093/nar/gkh478
Krüger, Jan, Sczyrba, Alexander, Kurtz, Stefan, and Giegerich, Robert. 2004. “e2g: an interactive web-based server for efficiently mapping large EST and cDNA sets to genomic sequences”. NUCLEIC ACIDS RESEARCH 32 (Web Server): W301-W304.
Krüger, J., Sczyrba, A., Kurtz, S., and Giegerich, R. (2004). e2g: an interactive web-based server for efficiently mapping large EST and cDNA sets to genomic sequences. NUCLEIC ACIDS RESEARCH 32, W301-W304.
Krüger, J., et al., 2004. e2g: an interactive web-based server for efficiently mapping large EST and cDNA sets to genomic sequences. NUCLEIC ACIDS RESEARCH, 32(Web Server), p W301-W304.
J. Krüger, et al., “e2g: an interactive web-based server for efficiently mapping large EST and cDNA sets to genomic sequences”, NUCLEIC ACIDS RESEARCH, vol. 32, 2004, pp. W301-W304.
Krüger, J., Sczyrba, A., Kurtz, S., Giegerich, R.: e2g: an interactive web-based server for efficiently mapping large EST and cDNA sets to genomic sequences. NUCLEIC ACIDS RESEARCH. 32, W301-W304 (2004).
Krüger, Jan, Sczyrba, Alexander, Kurtz, Stefan, and Giegerich, Robert. “e2g: an interactive web-based server for efficiently mapping large EST and cDNA sets to genomic sequences”. NUCLEIC ACIDS RESEARCH 32.Web Server (2004): W301-W304.
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Dieses Objekt ist durch das Urheberrecht und/oder verwandte Schutzrechte geschützt. [...]
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2019-09-06T08:48:03Z
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33b61bd07b5ef5a8dd340402fae7fb6d
Daten bereitgestellt von European Bioinformatics Institute (EBI)
7 Zitationen in Europe PMC
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