238 Publications
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2024 | Journal Article | Published | PUB-ID: 2999592Panacus: fast and exact pangenome growth and core size estimationPUB | DOI | WoS | PubMed | Europe PMC
Parmigiani, Luca, Panacus: fast and exact pangenome growth and core size estimation. Bioinformatics (). , 2024 -
2024 | Conference Paper | Published | PUB-ID: 2992085Reconstructing Rearrangement Phylogenies of Natural GenomesPUB | DOI
Bohnenkämper, Leonard, Reconstructing Rearrangement Phylogenies of Natural Genomes. 312 (). , 2024 -
2024 | Journal Article | Published | PUB-ID: 2988749Revisiting pangenome openness with k-mersPUB | DOI | WoS
Parmigiani, Luca, Revisiting pangenome openness with k-mers. Peer Community Journal 4 (). , 2024 -
2024 | Journal Article | Published | PUB-ID: 2990552Applying rearrangement distances to enable plasmid epidemiology with plingPUB | DOI | PubMed | Europe PMC | Preprint
Frolova, Daria, Applying rearrangement distances to enable plasmid epidemiology with pling. Microbial Genomics 10 (10). , 2024 -
2024 | Book (Editor) | Published | PUB-ID: 2990269Comparative Genomics. Methods and ProtocolsPUB | DOI
Setubal, João Carlos, Comparative Genomics. Methods and Protocols. 2802 (). New York, NY, 2024 -
2024 | Book Chapter | Published | PUB-ID: 2990270Family-Free Genome ComparisonPUB | DOI
Dias Vieira Braga, Marília, Family-Free Genome Comparison. Comparative Genomics. Methods and Protocols 2802 (). New York, NY, 2024 -
2024 | Book Chapter | Published | PUB-ID: 2990271Methods for Pangenomic Core DetectionPUB | DOI
Schulz, Tizian, Methods for Pangenomic Core Detection. Comparative Genomics. Methods and Protocols 2802 (). New York, NY, 2024 -
2024 | Journal Article | Published | PUB-ID: 2985702
Investigating the complexity of the double distance problemsPUB | PDF | DOI | WoS | PubMed | Europe PMC
Dias Vieira Braga, Marília, Investigating the complexity of the double distance problems. Algorithms for Molecular Biology 19 (). , 2024 -
2023 | Conference Paper | Published | PUB-ID: 2981606On the Class of Double Distance ProblemsPUB | DOI | WoS
Dias Vieira Braga, Marília, On the Class of Double Distance Problems. Comparative Genomics. 20th International Conference, RECOMB-CG 2023, Istanbul, Turkey, April 14–15, 2023, Proceedings 13883 (). Cham, 2023 -
2023 | Journal Article | Published | PUB-ID: 2984551NFDI4Microbiota – national research data infrastructure for microbiota researchPUB | DOI
Förstner, Konrad U., NFDI4Microbiota – national research data infrastructure for microbiota research. Research Ideas and Outcomes 9 (). , 2023 -
2023 | Journal Article | Published | PUB-ID: 2969065HaploBlocks: efficient detection of positive selection in large population genomic datasetsPUB | DOI | WoS | PubMed | Europe PMC
Kirsch-Gerweck, Benedikt, HaploBlocks: efficient detection of positive selection in large population genomic datasets. Molecular Biology and Evolution 40 (3). , 2023 -
2022 | Preprint | Published | PUB-ID: 2967089Revisiting pangenome openness with k-mersPUB | DOI
Parmigiani, Luca, Revisiting pangenome openness with k-mers. bioRxiv (). , 2022 -
2022 | Conference Paper | Published | PUB-ID: 2965398A Linear Time Algorithm for an Extended Version of the Breakpoint Double DistancePUB | DOI
Dias Vieira Braga, Marília, A Linear Time Algorithm for an Extended Version of the Breakpoint Double Distance. 22nd International Workshop on Algorithms in Bioinformatics (WABI 2022) 242 (). Dagstuhl, 2022 -
2022 | Journal Article | Published | PUB-ID: 2963777Numeric Lyndon-based feature embedding of sequencing reads for machine learning approachesPUB | DOI | WoS
Bonizzoni, Paola, Numeric Lyndon-based feature embedding of sequencing reads for machine learning approaches. Information Sciences 607 (). , 2022 -
2022 | Journal Article | Published | PUB-ID: 2963659
Sequence-based pangenomic core detectionPUB | PDF | DOI | Download (ext.) | WoS | PubMed | Europe PMC
Schulz, Tizian, Sequence-based pangenomic core detection. iScience 25 (6). , 2022 -
2021 | Book (Editor) | Published | PUB-ID: 2959449
The Bielefeld Institute for Bioinformatics InfrastructurePUB | PDF | DOI
Stoye, Jens, The Bielefeld Institute for Bioinformatics Infrastructure. (). Bielefeld, 2021 -
2021 | Journal Article | Published | PUB-ID: 2942686Computing the Inversion-Indel DistancePUB | DOI | WoS | PubMed | Europe PMC | arXiv
Willing, Eyla, Computing the Inversion-Indel Distance. IEEE/ACM Transactions on Computational Biology and Bioinformatics 18 (6). , 2021 -
2021 | Journal Article | Published | PUB-ID: 2950825
Detecting High Scoring Local Alignments in Pangenome GraphsPUB | PDF | DOI | WoS | PubMed | Europe PMC
Schulz, Tizian, Detecting High Scoring Local Alignments in Pangenome Graphs. Bioinformatics 37 (16). , 2021 -
2021 | Conference Paper | Published | PUB-ID: 2952705Can We Replace Reads by Numeric Signatures? Lyndon Fingerprints as Representations of Sequencing Reads for Machine LearningPUB
Bonizzoni, Paola, Can We Replace Reads by Numeric Signatures? Lyndon Fingerprints as Representations of Sequencing Reads for Machine Learning. Proceedings of AlCoB 2021 12715 (). , 2021 -
2021 | Journal Article | Published | PUB-ID: 2946303Computing the rearrangement distance of natural genomesPUB | DOI | WoS | PubMed | Europe PMC
Bohnenkämper, Leonard, Computing the rearrangement distance of natural genomes. Journal of Computational Biology 28 (4). , 2021 -
2021 | Journal Article | Published | PUB-ID: 2945991Reconstructing Tumor Evolutionary Histories and Clone Trees in Polynomial-time with SubMARinePUB | DOI | WoS | PubMed | Europe PMC | Preprint
Sundermann, Linda K., Reconstructing Tumor Evolutionary Histories and Clone Trees in Polynomial-time with SubMARine. PLOS Computational Biology 17 (1). , 2021 -
2021 | Special Issue | Published | PUB-ID: 2949108Computational Methods for Microbiome AnalysisPUB | DOI | Download (ext.)
Setubal, João C., Computational Methods for Microbiome Analysis. Frontiers in Genetics Research Topic (). , 2021 -
2020 | Preprint | Published | PUB-ID: 2943670On motifs in colored graphsPUB | Download (ext.) | arXiv
Rubert, Diego, On motifs in colored graphs. arXiv:2005.13634 (). , 2020 -
2020 | Journal Article | Published | PUB-ID: 2942995Searching and Inferring Colorful Topological Motifs in Vertex-Colored GraphsPUB | DOI | WoS
Rubert, Diego, Searching and Inferring Colorful Topological Motifs in Vertex-Colored Graphs. Journal of Combinatorial Optimization 40 (). , 2020 -
2020 | Journal Article | Published | PUB-ID: 2937712
Analysis of local genome rearrangement improves resolution of ancestral genomic maps in plantsPUB | PDF | DOI | WoS | PubMed | Europe PMC
Rubert, Diego, Analysis of local genome rearrangement improves resolution of ancestral genomic maps in plants. BMC Genomics 21 (Suppl. 2). , 2020 -
2020 | Journal Article | Published | PUB-ID: 2953267Severe COVID-19 Is Marked by a Dysregulated Myeloid Cell CompartmentPUB | DOI | WoS | PubMed | Europe PMC
Schulte-Schrepping, Jonas, Severe COVID-19 Is Marked by a Dysregulated Myeloid Cell Compartment. Cell 182 (6). , 2020 -
2020 | Report | PUB-ID: 2944669NFDI4BioDiversity - A Consortium for the National Research Data Infrastructure (NFDI) : ProposalPUB | DOI
Glöckner, Frank Oliver, NFDI4BioDiversity - A Consortium for the National Research Data Infrastructure (NFDI) : Proposal. (). , 2020 -
2020 | Journal Article | Published | PUB-ID: 2948972Editorial: Computational Methods for Microbiome AnalysisPUB | DOI | WoS | PubMed | Europe PMC
Setubal, Joao C., Editorial: Computational Methods for Microbiome Analysis. Frontiers in Genetics 11 (). , 2020 -
2020 | Preprint | Published | PUB-ID: 2940602HASLR: Fast Hybrid Assembly of Long ReadsPUB | DOI | Download (ext.) | Preprint
Haghshenas, Ehsan, HASLR: Fast Hybrid Assembly of Long Reads. bioRxiv (). , 2020 -
2020 | Preprint | Published | PUB-ID: 2945720Detecting High Scoring Local Alignments in Pangenome GraphsPUB | DOI | Preprint
Schulz, Tizian, Detecting High Scoring Local Alignments in Pangenome Graphs. bioRxiv (). , 2020 -
2020 | Journal Article | Published | PUB-ID: 2939618
Finding all maximal perfect haplotype blocks in linear timePUB | PDF | DOI | WoS | PubMed | Europe PMC
Alanko, Jarno, Finding all maximal perfect haplotype blocks in linear time. Algorithms for Molecular Biology 15 (). , 2020 -
2020 | Journal Article | Published | PUB-ID: 2945430HASLR: Fast Hybrid Assembly of Long ReadsPUB | DOI | WoS | PubMed | Europe PMC
Haghshenas, Ehsan, HASLR: Fast Hybrid Assembly of Long Reads. iScience 23 (8). , 2020 -
2020 | Journal Article | Published | PUB-ID: 2939598Horizontal Gene Transfer Phylogenetics: A Random Walk ApproachPUB | DOI | WoS | PubMed | Europe PMC
Sevillya, Gur, Horizontal Gene Transfer Phylogenetics: A Random Walk Approach. Molecular Biology and Evolution 37 (5). , 2020 -
2020 | Preprint | Published | PUB-ID: 2939861Computing the rearrangement distance of natural genomesPUB | Download (ext.) | arXiv
Bohnenkämper, Leonard, Computing the rearrangement distance of natural genomes. arXiv:2001.02139 (). , 2020 -
2020 | Conference Paper | Published | PUB-ID: 2939729Computing the rearrangement distance of natural genomesPUB | DOI
Bohnenkämper, Leonard, Computing the rearrangement distance of natural genomes. Proceedings of RECOMB 2020 12074 (). , 2020 -
2019 | Journal Article | Published | PUB-ID: 2932884Whole-genome sequence of the bovine blood fluke Schistosoma bovis supports interspecific hybridization with S. haematobiumPUB | DOI | WoS | PubMed | Europe PMC
Oey, Harald, Whole-genome sequence of the bovine blood fluke Schistosoma bovis supports interspecific hybridization with S. haematobium. PLOS Pathogens 15 (1). , 2019 -
2019 | Report | Published | PUB-ID: 293926025 Years of the Burrows-Wheeler Transform. Report from Dagstuhl Seminar 19241PUB | DOI
Gagie, Travis, 25 Years of the Burrows-Wheeler Transform. Report from Dagstuhl Seminar 19241. 9(6) (). , 2019 -
2019 | Conference Paper | Published | PUB-ID: 2937148Finding All Maximal Perfect Haplotype Blocks in Linear TimePUB | DOI
Alanko, Jarno, Finding All Maximal Perfect Haplotype Blocks in Linear Time. Proceedings of WABI 2019 143 (). Dagstuhl, 2019 -
2019 | Book Chapter | Published | PUB-ID: 2932883A Perspective on Comparative and Functional GenomicsPUB | DOI
Dörr, Daniel, A Perspective on Comparative and Functional Genomics. Bioinformatics and Phylogenetics 29 (). Cham, 2019 -
2018 | Journal Article | Published | PUB-ID: 2919006
Computing the family-free DCJ similarityPUB | PDF | DOI | WoS | PubMed | Europe PMC
Rubert, Diego, Computing the family-free DCJ similarity. BMC Bioinformatics 19 (Suppl. 6). , 2018 -
2018 | Journal Article | Published | PUB-ID: 2919012Flexible metagenome analysis using the MGX frameworkPUB | DOI | WoS | PubMed | Europe PMC
Jaenicke, Sebastian, Flexible metagenome analysis using the MGX framework. Microbiome 6 (1). , 2018 -
2018 | Journal Article | Published | PUB-ID: 2919005
GraphTeams. A method for discovering spatial gene clusters in Hi-C sequencing dataPUB | PDF | DOI | WoS | PubMed | Europe PMC
Schulz, Tizian, GraphTeams. A method for discovering spatial gene clusters in Hi-C sequencing data. BMC Genomics 19 (Suppl. 5). , 2018 -
2018 | Journal Article | Published | PUB-ID: 2930268Dynamic Alignment-Free and Reference-Free Read CompressionPUB | DOI | WoS | PubMed | Europe PMC
Holley, Guillaume, Dynamic Alignment-Free and Reference-Free Read Compression. JOURNAL OF COMPUTATIONAL BIOLOGY 25 (7). , 2018 -
2018 | Book Chapter | Published | PUB-ID: 2913921Pan-genome Storage and Analysis TechniquesPUB | DOI
Zekic, Tina, Pan-genome Storage and Analysis Techniques. Comparative Genomics. Methods and Protocols 1704 (). New York, 2018 -
2018 | Book Chapter | Published | PUB-ID: 2913922Family-Free Genome ComparisonPUB | DOI
Dörr, Daniel, Family-Free Genome Comparison. Comparative Genomics: Methods and Protocols 1704 (). New York, 2018 -
2018 | Book (Editor) | Published | PUB-ID: 2913920Comparative Genomics: Methods and ProtocolsPUB | DOI
Setubal, João C, Comparative Genomics: Methods and Protocols. 1704 (). New York, 2018 -
2018 | Journal Article | Published | PUB-ID: 2918481Scaffolding of Ancient Contigs and Ancestral Reconstruction in a Phylogenetic FrameworkPUB | DOI | WoS | PubMed | Europe PMC
Luhmann, Nina, Scaffolding of Ancient Contigs and Ancestral Reconstruction in a Phylogenetic Framework. IEEE/ACM Transactions on Computational Biology and Bioinformatics 15 (6). , 2018 -
2018 | Conference Paper | Published | PUB-ID: 2930445Identifying Maximal Perfect Haplotype BlocksPUB | DOI
Cunha, Luís, Identifying Maximal Perfect Haplotype Blocks. Proceedings of BSB 2018 11228 (). , 2018 -
2017 | Conference Paper | Published | PUB-ID: 2913015Algorithms for Computing the Family-Free Genomic Similarity under DCJPUB | DOI
Rubert, Diego, Algorithms for Computing the Family-Free Genomic Similarity under DCJ. Comparative Genomics. RECOMB-CG 2017 10562 (). Cham, 2017 -
2017 | Journal Article | Published | PUB-ID: 2909057
Approximating the DCJ distance of balanced genomes in linear timePUB | PDF | DOI | WoS | PubMed | Europe PMC
Rubert, Diego, Approximating the DCJ distance of balanced genomes in linear time. Algorithms for Molecular Biology 12 (1). , 2017 -
2017 | Preprint | Published | PUB-ID: 2908521Faster Jumbled Indexing for Binary Run-Length Encoded StringsPUB | Download (ext.) | arXiv
Cunha, Luís, Faster Jumbled Indexing for Binary Run-Length Encoded Strings. arXiv: 1702.01280 (). , 2017 -
2017 | Conference Paper | Published | PUB-ID: 2909409Fast and Simple Jumbled Indexing for Binary Run-Length Encoded StringsPUB | DOI
Cunha, Luis, Fast and Simple Jumbled Indexing for Binary Run-Length Encoded Strings. Proceedings of CPM 2017 78 (). , 2017 -
2017 | Journal Article | Published | PUB-ID: 2913556Bioinformatics for NGS-based metagenomics and the application to biogas researchPUB | DOI | Download (ext.) | WoS | PubMed | Europe PMC
Jünemann, Sebastian, Bioinformatics for NGS-based metagenomics and the application to biogas research. Journal of Biotechnology 261 (SI). , 2017 -
2017 | Conference Paper | Published | PUB-ID: 2907587Dynamic Alignment-Free and Reference-Free Read CompressionPUB | DOI
Holley, Guillaume, Dynamic Alignment-Free and Reference-Free Read Compression. Proceedings of RECOMB 2017 10229 (). , 2017 -
2017 | Conference Paper | Published | PUB-ID: 2913016Finding Teams in Graphs and its Application to Spatial Gene Cluster DiscoveryPUB | DOI
Schulz, Tizian, Finding Teams in Graphs and its Application to Spatial Gene Cluster Discovery. Proceedings of RECOMB-CG 2017 1704 (). Berlin, 2017 -
2017 | Journal Article | Published | PUB-ID: 2909967New Genome Similarity Measures based on Conserved Gene AdjacenciesPUB | DOI | WoS | PubMed | Europe PMC
Dörr, Daniel, New Genome Similarity Measures based on Conserved Gene Adjacencies. Journal of Computational Biology 24 (6). , 2017 -
2016 | Conference Paper | Published | PUB-ID: 2903708A Linear Time Approximation Algorithm for the DCJ Distance for Genomes with Bounded Number of DuplicatesPUB | DOI
Rubert, Diego, A Linear Time Approximation Algorithm for the DCJ Distance for Genomes with Bounded Number of Duplicates. Algorithms in Bioinformatics. WABI 2016 9838 (). Cham, 2016 -
2016 | Journal Article | Published | PUB-ID: 2905930Finding approximate gene clusters with GECKO 3PUB | DOI | WoS | PubMed | Europe PMC
Winter, Sascha, Finding approximate gene clusters with GECKO 3. Nucleic Acids Research 44 (20). , 2016 -
2016 | Journal Article | Published | PUB-ID: 2900421Identification of the CIMP-like subtype and aberrant methylation of members of the chromosomal segregation and spindle assembly pathways in esophageal adenocarcinomaPUB | DOI | WoS | PubMed | Europe PMC
Krause, Lutz, Identification of the CIMP-like subtype and aberrant methylation of members of the chromosomal segregation and spindle assembly pathways in esophageal adenocarcinoma. Carcinogenesis 37 (4). , 2016 -
2016 | Journal Article | Published | PUB-ID: 2900129
Bloom Filter Trie: an alignment-free and reference-free data structure for pan-genome storagePUB | PDF | DOI | WoS | PubMed | Europe PMC
Holley, Guillaume, Bloom Filter Trie: an alignment-free and reference-free data structure for pan-genome storage. Algorithms for Molecular Biology 11 (1). , 2016 -
2016 | Conference Paper | Published | PUB-ID: 2900111New Genome Similarity Measures based on Conserved Gene AdjacenciesPUB | DOI
Kowada, Luis Antonio B., New Genome Similarity Measures based on Conserved Gene Adjacencies. Research in Computational Molecular Biology. RECOMB 2016 9649 (). , 2016 -
2015 | Conference Paper | Published | PUB-ID: 2757497Bloom Filter Trie - a data structure for pan-genome storagePUB | DOI
Holley, Guillaume, Bloom Filter Trie - a data structure for pan-genome storage. Algorithms in Bioinformatics. WABI 2015. Proceedings 9289 (). Berlin, Heidelberg, 2015 -
2015 | Journal Article | Published | PUB-ID: 2726366
On the family-free DCJ distance and similarityPUB | PDF | DOI | WoS | PubMed | Europe PMC
Viduani Martinez, Fábio Henrique, On the family-free DCJ distance and similarity. Algorithms for Molecular Biology 10 (1). , 2015 -
2015 | Journal Article | Published | PUB-ID: 2677844Sorting linear genomes with rearrangements and indelsPUB | DOI | WoS | PubMed | Europe PMC
Dias Vieira Braga, Marília, Sorting linear genomes with rearrangements and indels. IEEE/ACM Transactions on Computational Biology and Bioinformatics 12 (3). , 2015 -
2015 | Conference (Editor) | Published | PUB-ID: 2780229Proceedings of the 13th Annual Research in Computational Molecular Biology (RECOMB) Satellite Workshop on Comparative Genomics: BioinformaticsPUB | Download (ext.)
Meidanis, Joao, Proceedings of the 13th Annual Research in Computational Molecular Biology (RECOMB) Satellite Workshop on Comparative Genomics: Bioinformatics. 16 (Supplement 14). , 2015 -
2015 | Conference (Editor) | Published | PUB-ID: 2780232Proceedings of the 13th Annual Research in Computational Molecular Biology (RECOMB) Satellite Workshop on Comparative Genomics: GenomicsPUB | Download (ext.)
Meidanis, Joao, Proceedings of the 13th Annual Research in Computational Molecular Biology (RECOMB) Satellite Workshop on Comparative Genomics: Genomics. 16 (Supplement 10). , 2015 -
2014 | Journal Article | Published | PUB-ID: 2689773GABenchToB: A Genome Assembly Benchmark Tuned on Bacteria and Benchtop SequencersPUB | DOI | WoS | PubMed | Europe PMC
Jünemann, Sebastian, GABenchToB: A Genome Assembly Benchmark Tuned on Bacteria and Benchtop Sequencers. PLOS ONE 9 (9). , 2014 -
2014 | Journal Article | Published | PUB-ID: 2685362
Orthology Detection Combining Clustering and Synteny for Very Large DatasetsPUB | PDF | DOI | WoS | PubMed | Europe PMC
Lechner, Marcus, Orthology Detection Combining Clustering and Synteny for Very Large Datasets. PLoS ONE 9 (8). , 2014 -
2014 | Conference Paper | Published | PUB-ID: 2684241On the family-free DCJ distancePUB | DOI
Viduani Martinez, Fábio Henrique, On the family-free DCJ distance. Algorithms in Bioinformatics. WABI 2014 8701 (). Berlin ; Heidelberg, 2014 -
2014 | Journal Article | Published | PUB-ID: 2687033
Identifying Gene Clusters by Discovering Common Intervals in Indeterminate StringsPUB | PDF | DOI | WoS | PubMed | Europe PMC
Dörr, Daniel, Identifying Gene Clusters by Discovering Common Intervals in Indeterminate Strings. BMC Genomics 15 (Suppl. 6: Proc. of RECOMB-CG 2014). , 2014 -
2014 | Journal Article | Published | PUB-ID: 2674387ReadXplorer - Visualization and Analysis of Mapped SequencesPUB | DOI | WoS | PubMed | Europe PMC
Hilker, Rolf, ReadXplorer - Visualization and Analysis of Mapped Sequences. Bioinformatics 30 (16). , 2014 -
2014 | Journal Article | Published | PUB-ID: 2665038Improving the genome annotation of the acarbose producer Actinoplanes sp. SE50/110 by sequencing enriched 5'-ends of primary transcriptsPUB | DOI | WoS | PubMed | Europe PMC
Schwientek, Patrick, Improving the genome annotation of the acarbose producer Actinoplanes sp. SE50/110 by sequencing enriched 5'-ends of primary transcripts. Journal of Biotechnology 190 (). , 2014 -
2014 | Journal Article | Published | PUB-ID: 2685988Discovery of transcription start sites in the Chinese hamster genome by next-generation RNA sequencingPUB | DOI | WoS | PubMed | Europe PMC
Jakobi, Tobias, Discovery of transcription start sites in the Chinese hamster genome by next-generation RNA sequencing. Journal of Biotechnology 190 (). , 2014 -
2014 | Conference Paper | Published | PUB-ID: 2690122Scaffolding of Ancient Contigs and Ancestral Reconstruction in a Phylogenetic FrameworkPUB | DOI
Luhmann, Nina, Scaffolding of Ancient Contigs and Ancestral Reconstruction in a Phylogenetic Framework. Proc. of BSB 2014 8826 (). , 2014 -
2014 | Encyclopedia Article | Published | PUB-ID: 2693552Suffix Tree ConstructionPUB | DOI
Stoye, Jens, Suffix Tree Construction. Encyclopedia of Algorithms (). , 2014 -
2014 | Journal Article | Published | PUB-ID: 2693409Metatranskriptomik der Mikrobiota aus der menschlichen AchselhöhlePUB | DOI
Fredrich, Eugenie, Metatranskriptomik der Mikrobiota aus der menschlichen Achselhöhle. BIOspektrum 20 (5). , 2014 -
2014 | Journal Article | Published | PUB-ID: 2643941BiPACE 2D – Graph-based multiple alignment for comprehensive two-dimensional gas chromatography–mass spectrometryPUB | DOI | WoS | PubMed | Europe PMC
Hoffmann, Nils, BiPACE 2D – Graph-based multiple alignment for comprehensive two-dimensional gas chromatography–mass spectrometry. Bioinformatics 30 (7). , 2014 -
2014 | Journal Article | Published | PUB-ID: 2665333Mycoplasma salivarium as a Dominant Coloniser of Fanconi Anaemia Associated Oral CarcinomaPUB | DOI | WoS | PubMed | Europe PMC
Henrich, Birgit, Mycoplasma salivarium as a Dominant Coloniser of Fanconi Anaemia Associated Oral Carcinoma. PLoS ONE 9 (3). , 2014 -
2013 | Journal Article | Published | PUB-ID: 2575011metaBEETL: high-throughput analysis of heterogeneous microbial populations from shotgun DNA sequencesPUB | DOI | Download (ext.) | WoS | PubMed | Europe PMC
Ander, Christina, metaBEETL: high-throughput analysis of heterogeneous microbial populations from shotgun DNA sequences. BMC Bioinformatics 14 (Suppl 5: Proc. of RECOMB-Seq 2013). , 2013 -
2013 | Encyclopedia Article | Published | PUB-ID: 2577323Taxonomic classification of metagenomic shotgun sequences with CARMA3PUB | DOI
Gerlach, Wolfgang, Taxonomic classification of metagenomic shotgun sequences with CARMA3. Encyclopedia of Metagenomics (). , 2013 -
2013 | Journal Article | Published | PUB-ID: 2611630
On the Inversion-Indel DistancePUB | PDF | DOI | WoS | PubMed | Europe PMC
Willing, Eyla, On the Inversion-Indel Distance. BMC Bioinformatics 14 (Suppl 15: Proc. of RECOMB-CG 2013). , 2013 -
2013 | Conference Paper | Published | PUB-ID: 2611641Restricted DCJ-Indel Model RevisitedPUB | DOI
Dias Vieira Braga, Marília, Restricted DCJ-Indel Model Revisited. Advances in Bioinformatics and Computational Biology. BSB 2013 8213 (). Cham, 2013 -
2013 | Book Chapter | Published | PUB-ID: 2611648The Potential of Family-Free Genome ComparisonPUB | DOI
Dias Vieira Braga, Marília, The Potential of Family-Free Genome Comparison. Models and Algorithms for Genome Evolution 19 (). London, 2013 -
2013 | Journal Article | Published | PUB-ID: 2641228Corrigendum: Updating benchtop sequencing performance comparisonPUB | DOI | WoS | PubMed | Europe PMC
Jünemann, Sebastian, Corrigendum: Updating benchtop sequencing performance comparison. Nature biotechnology 31 (12). , 2013 -
2013 | Book Chapter | Published | PUB-ID: 2611643The Genesis of the DCJ FormulaPUB | DOI
Bergeron, Anne, The Genesis of the DCJ Formula. Models and Algorithms for Genome Evolution 19 (). London, 2013 -
2013 | Journal Article | Published | PUB-ID: 2575361Next-generation-sequencing-spectratyping reveals public T-cell receptor repertoires in pediatric very severe aplastic anemia and identifies a beta chain CDR3 sequence associated with hepatitis-induced pathogenesisPUB | DOI | WoS | PubMed | Europe PMC
Krell, Pina, Next-generation-sequencing-spectratyping reveals public T-cell receptor repertoires in pediatric very severe aplastic anemia and identifies a beta chain CDR3 sequence associated with hepatitis-induced pathogenesis. Haematologica 98 (9). , 2013 -
2013 | Journal Article | Published | PUB-ID: 2566922Updating benchtop sequencing performance comparisonPUB | DOI | WoS | PubMed | Europe PMC
Jünemann, Sebastian, Updating benchtop sequencing performance comparison. Nature Biotechnology 31 (4). , 2013 -
2013 | Conference (Editor) | Published | PUB-ID: 2616537Algorithms in BioinformaticsPUB | DOI
Darling, Aaron, Algorithms in Bioinformatics. 8126 (). Heidelberg, 2013 -
2013 | Journal Article | Published | PUB-ID: 2611633
Statistics for approximate gene clustersPUB | PDF | DOI | WoS | PubMed | Europe PMC
Jahn, Katharina, Statistics for approximate gene clusters. BMC Bioinformatics 14 (Suppl 15: Proc. of RECOMB-CG 2013). , 2013 -
2013 | Journal Article | Published | PUB-ID: 2548236Comparative RNA-sequencing of the acarbose producer Actinoplanes sp. SE50/110 cultivated in different growth mediaPUB | DOI | WoS | PubMed | Europe PMC
Schwientek, Patrick, Comparative RNA-sequencing of the acarbose producer Actinoplanes sp. SE50/110 cultivated in different growth media. Journal of Biotechnology 167 (2). , 2013 -
2013 | Journal Article | Published | PUB-ID: 2529202MetaSAMS - A novel software platform for taxonomic classification, functional annotation and comparative analysis of metagenome datasetsPUB | DOI | WoS | PubMed | Europe PMC
Zakrzewski, Martha, MetaSAMS - A novel software platform for taxonomic classification, functional annotation and comparative analysis of metagenome datasets. Journal of Biotechnology 167 (2). , 2013 -
2012 | Journal Article | Published | PUB-ID: 2517230Bacterial Community Shift in Treated Periodontitis Patients Revealed by Ion Torrent 16S rRNA Gene Amplicon SequencingPUB | DOI | WoS | PubMed | Europe PMC
Jünemann, Sebastian, Bacterial Community Shift in Treated Periodontitis Patients Revealed by Ion Torrent 16S rRNA Gene Amplicon Sequencing. PLoS ONE 7 (8). , 2012 -
2012 | Journal Article | Published | PUB-ID: 2512642
Gene family assignment-free comparative genomicsPUB | PDF | DOI | WoS | PubMed | Europe PMC
Dörr, Daniel, Gene family assignment-free comparative genomics. BMC Bioinformatics 13 (Suppl 19: Proc. of RECOMB-CG 2012). , 2012 -
2012 | Journal Article | Published | PUB-ID: 2517239
Combining peak- and chromatogram-based retention time alignment algorithms for multiple chromatography-mass spectrometry datasetsPUB | PDF | DOI | WoS | PubMed | Europe PMC
Hoffmann, Nils, Combining peak- and chromatogram-based retention time alignment algorithms for multiple chromatography-mass spectrometry datasets. BMC Bioinformatics 13 (1). , 2012 -
2012 | Journal Article | Published | PUB-ID: 2512644
Multiple genome comparison based on overlap regions of pairwise local alignmentsPUB | PDF | DOI | WoS | PubMed | Europe PMC
Jahn, Katharina, Multiple genome comparison based on overlap regions of pairwise local alignments. BMC Bioinformatics 13 (Suppl. 19: Proc. of RECOMB-CG 2012). , 2012 -
2012 | Journal Article | Published | PUB-ID: 2486060
The complete genome sequence of the acarbose producer Actinoplanes sp. SE50/110PUB | PDF | DOI | Download (ext.) | WoS | PubMed | Europe PMC
Schwientek, Patrick, The complete genome sequence of the acarbose producer Actinoplanes sp. SE50/110. BMC Genomics 13 (1). , 2012 -
2012 | Conference (Editor) | Published | PUB-ID: 2510416Combinatorial Pattern MatchingPUB | DOI
Kärkkäinen, Juha, Combinatorial Pattern Matching. 7354 (). Heidelberg, 2012 -
2012 | Book Chapter | Published | PUB-ID: 2468382
Generic Software Frameworks for GC-MS Based MetabolomicsPUB | PDF | DOI | Download (ext.)
Hoffmann, Nils, Generic Software Frameworks for GC-MS Based Metabolomics. Metabolomics (). , 2012 -
2012 | Journal Article | Published | PUB-ID: 2510984UniMoG - A unifying framework for genomic distance calculation and sorting based on DCJPUB | DOI | WoS | PubMed | Europe PMC
Hilker, Rolf, UniMoG - A unifying framework for genomic distance calculation and sorting based on DCJ. Bioinformatics 28 (19). , 2012 -
2011 | Journal Article | Published | PUB-ID: 2091779Swiftly Computing Center StringsPUB | DOI | WoS | PubMed | Europe PMC
Hufsky, Franziska, Swiftly Computing Center Strings. BMC Bioinformatics 12 (1). , 2011 -
2011 | Journal Article | Published | PUB-ID: 2396509
Genomic distance under gene substitutionsPUB | PDF | DOI | WoS | PubMed | Europe PMC
Dias Vieira Braga, Marília, Genomic distance under gene substitutions. BMC Bioinformatics 12 (Suppl 9: Proc. of RECOMB-CG 2011). , 2011 -
2011 | Journal Article | Published | PUB-ID: 2396558
On the weight of indels in genomic distancesPUB | PDF | DOI | WoS | PubMed | Europe PMC
Dias Vieira Braga, Marília, On the weight of indels in genomic distances. BMC Bioinformatics 12 (Suppl 9: RECOMB-CG 2011). , 2011 -
2011 | Journal Article | Published | PUB-ID: 1897974Balanced Vertices in Trees and a Simpler Algorithm to Compute the Genomic DistancePUB | DOI | WoS | arXiv
Erdős, Péter L., Balanced Vertices in Trees and a Simpler Algorithm to Compute the Genomic Distance. Applied Mathematics Letters 24 (1). , 2011 -
2011 | Journal Article | Published | PUB-ID: 2091794Double Cut and Join with Insertions and DeletionsPUB | DOI | WoS | PubMed | Europe PMC
Dias Vieira Braga, Marília, Double Cut and Join with Insertions and Deletions. Journal of Computational Biology 18 (9). , 2011 -
2011 | Journal Article | Published | PUB-ID: 2091790Restricted DCJ Model. Rearrangement Problems with Chromosome ReincorporationPUB | DOI | WoS | PubMed | Europe PMC
Kovac, Jakub, Restricted DCJ Model. Rearrangement Problems with Chromosome Reincorporation. Journal of Computational Biology 18 (9). , 2011 -
2011 | Journal Article | Published | PUB-ID: 2354746Sequencing of high G + C microbial genomes using the ultrafast pyrosequencing technologyPUB | DOI | WoS | PubMed | Europe PMC
Schwientek, Patrick, Sequencing of high G + C microbial genomes using the ultrafast pyrosequencing technology. Journal of Biotechnology 155 (1). , 2011 -
2011 | Journal Article | Published | PUB-ID: 2289952Exact and complete short-read alignment to microbial genomes using Graphics Processing Unit programmingPUB | DOI | WoS | PubMed | Europe PMC
Blom, Jochen, Exact and complete short-read alignment to microbial genomes using Graphics Processing Unit programming. Bioinformatics 27 (10). , 2011 -
2011 | Journal Article | Published | PUB-ID: 1918550Common Intervals of Multiple PermutationsPUB | DOI | WoS
Heber, Steffen, Common Intervals of Multiple Permutations. Algorithmica 60 (2). , 2011 -
2011 | Journal Article | Published | PUB-ID: 2298170
Taxonomic classification of metagenomic shotgun sequences with CARMA3.PUB | PDF | DOI | WoS | PubMed | Europe PMC
Gerlach, Wolfgang, Taxonomic classification of metagenomic shotgun sequences with CARMA3.. Nucleic Acids Res 39 (14). , 2011 -
2011 | Journal Article | Published | PUB-ID: 2091787Consistency of Sequence-Based Gene ClustersPUB | DOI | Download (ext.) | WoS | PubMed | Europe PMC
Wittler, Roland, Consistency of Sequence-Based Gene Clusters. Journal of Computational Biology 18 (9). , 2011 -
2010 | Conference Paper | Published | PUB-ID: 1919211Swiftly Computing Center StringsPUB | DOI | WoS | PubMed | Europe PMC
Hufsky, Franziska, Swiftly Computing Center Strings. Proc. of WABI 2010 6293 (). , 2010 -
2010 | Journal Article | Published | PUB-ID: 1966439The complete genome sequence of Corynebacterium pseudotuberculosis FRC41 isolated from a 12-year-old girl with necrotizing lymphadenitis reveals insights into gene-regulatory networks contributing to virulencePUB | DOI | WoS | PubMed | Europe PMC
Trost, Eva, The complete genome sequence of Corynebacterium pseudotuberculosis FRC41 isolated from a 12-year-old girl with necrotizing lymphadenitis reveals insights into gene-regulatory networks contributing to virulence. BMC Genomics 11 (1). , 2010 -
2010 | Conference Abstract / Poster | Published | PUB-ID: 2445157Computing the Genomic Distance in Linear TimePUB | Download (ext.)
Bergeron, Anne, Computing the Genomic Distance in Linear Time. Dagstuhl Seminar Proceedings: 10231 Abstracts Collection : Structure Discovery in Biology: Motifs, Networks & Phylogenies 10231 (). Dagstuhl, 2010 -
2010 | Conference Abstract / Poster | Published | PUB-ID: 2907492A New Linear Time Algorithm to Compute the Genomic Distance Via the Double Cut and Join DistancePUB | Download (ext.)
Bergeron, Anne, A New Linear Time Algorithm to Compute the Genomic Distance Via the Double Cut and Join Distance. Structure Discovery in Biology: Motifs, Networks & Phylogenies 10231 (). Dagstuhl, Germany, 2010 -
2010 | Journal Article | Published | PUB-ID: 1893893
Phylogenetic Comparative AssemblyPUB | PDF | DOI | Download (ext.) | WoS | PubMed | Europe PMC
Husemann, Peter, Phylogenetic Comparative Assembly. Algorithms for Molecular Biology 5 (1). , 2010 -
2010 | Book Chapter | Published | PUB-ID: 1918836Indexing and Searching a Mass Spectrometry DatabasePUB | DOI
Besenbacher, Søren, Indexing and Searching a Mass Spectrometry Database. Algorithms and Applications: Essays Dedicated to Esko Ukkonen on the Occasion of His 60th Birthday 6060 (). Berlin, Heidelberg, 2010 -
2010 | Journal Article | Published | PUB-ID: 1795670Partitioning Biological Data with Transitivity ClusteringPUB | DOI | WoS | PubMed | Europe PMC
Wittkop, Tobias, Partitioning Biological Data with Transitivity Clustering. Nature Methods 7 (6). , 2010 -
2010 | Journal Article | Published | PUB-ID: 1898012Finding Nested Common Intervals EfficientlyPUB | DOI | WoS | PubMed | Europe PMC
Blin, Guillaume, Finding Nested Common Intervals Efficiently. Journal of Computational Biology 17 (9). , 2010 -
2010 | Conference Paper | Published | PUB-ID: 1919217Consistency of Sequence-based Gene ClustersPUB | DOI | Download (ext.) | WoS | PubMed | Europe PMC
Wittler, Roland, Consistency of Sequence-based Gene Clusters. Proc. of Recomb-CG 2010 6398 (). , 2010 -
2010 | Conference Paper | Published | PUB-ID: 1893890Repeat-aware Comparative Genome AssemblyPUB | Download (ext.)
Husemann, Peter, Repeat-aware Comparative Genome Assembly. Proc. of GCB 2010 P-173 (). , 2010 -
2010 | Journal Article | Published | PUB-ID: 1588556r2cat: Synteny Plots and Comparative AssemblyPUB | DOI | WoS | PubMed | Europe PMC
Husemann, Peter, r2cat: Synteny Plots and Comparative Assembly. Bioinformatics 26 (4). , 2010 -
2010 | Journal Article | Published | PUB-ID: 1897997Rearrangement Models and Single-Cut OperationsPUB | DOI | WoS | PubMed | Europe PMC
Bergeron, Anne, Rearrangement Models and Single-Cut Operations. Journal of Computational Biology 17 (9). , 2010 -
2010 | Conference Paper | Published | PUB-ID: 1919216The Problem of Chromosome Reincorporation in DCJ Sorting and HalvingPUB | DOI
Kovac, Jakub, The Problem of Chromosome Reincorporation in DCJ Sorting and Halving. Proc. of Recomb-CG 2010 6398 (). , 2010 -
2010 | Journal Article | Published | PUB-ID: 1898025The Solution Space of Sorting by DCJPUB | DOI | WoS | PubMed | Europe PMC
Dias Vieira Braga, Marília, The Solution Space of Sorting by DCJ. Journal of Computational Biology 17 (9). , 2010 -
2010 | Conference Paper | Published | PUB-ID: 1919215Genomic Distance with DCJ and IndelsPUB | DOI
Dias Vieira Braga, Marília, Genomic Distance with DCJ and Indels. Proc. of WABI 2010 6293 (). , 2010 -
2009 | Conference Paper | Published | PUB-ID: 1893884Phylogenetic Comparative AssemblyPUB | DOI | WoS | PubMed | Europe PMC
Husemann, Peter, Phylogenetic Comparative Assembly. Proc. of WABI 2009 5724 (). , 2009 -
2009 | Journal Article | Published | PUB-ID: 1589663A New Linear Time Algorithm to Compute the Genomic Distance via the Double Cut and Join DistancePUB | DOI | WoS
Bergeron, Anne, A New Linear Time Algorithm to Compute the Genomic Distance via the Double Cut and Join Distance. Theoretical Computer Science 410 (51). , 2009 -
2009 | Conference Paper | Published | PUB-ID: 1919206Counting All DCJ Sorting ScenariosPUB | DOI
Dias Vieira Braga, Marília, Counting All DCJ Sorting Scenarios. Proc. of Recomb-CG 2009 5817 (). , 2009 -
2009 | Conference Paper | Published | PUB-ID: 1919207Finding Nested Common Intervals EfficientlyPUB | DOI | WoS | PubMed | Europe PMC
Blin, Guillaume, Finding Nested Common Intervals Efficiently. Proc. of Recomb-CG 2009 5817 (). , 2009 -
2009 | Journal Article | Published | PUB-ID: 1898137Approximative Gencluster und ihre Anwendung in der komparativen GenomikPUB | DOI
Jahn, Katharina, Approximative Gencluster und ihre Anwendung in der komparativen Genomik. Informatik-Spektrum 32 (4). , 2009 -
2009 | Journal Article | Published | PUB-ID: 1591507A Unified Approach for Reconstructing Ancient Gene ClustersPUB | DOI | Download (ext.) | WoS | PubMed | Europe PMC
Stoye, Jens, A Unified Approach for Reconstructing Ancient Gene Clusters. IEEE/ACM Transactions on Computational Biology and Bioinformatics 6 (3). , 2009 -
2009 | Journal Article | Published | PUB-ID: 1590204A report on the 2009 SIG on short read sequencing and algorithms (Short-SIG)PUB | DOI | WoS | PubMed | Europe PMC
Brudno, Michael, A report on the 2009 SIG on short read sequencing and algorithms (Short-SIG). BIOINFORMATICS 25 (21). , 2009 -
2009 | Journal Article | Published | PUB-ID: 1589098
WebCARMA: a web application for the functional and taxonomic classification of unassembled metagenomic readsPUB | PDF | DOI | WoS | PubMed | Europe PMC
Gerlach, Wolfgang, WebCARMA: a web application for the functional and taxonomic classification of unassembled metagenomic reads. BMC Bioinformatics 10 (1). , 2009 -
2009 | Journal Article | Published | PUB-ID: 1898105Computation of Median Gene ClustersPUB | DOI | WoS | PubMed | Europe PMC
Böcker, Sebastian, Computation of Median Gene Clusters. Journal of Computational Biology 16 (8). , 2009 -
2009 | Journal Article | Published | PUB-ID: 1591319ChromA: signal-based retention time alignment for chromatography-mass spectrometry dataPUB | DOI | WoS | PubMed | Europe PMC
Hoffmann, Nils, ChromA: signal-based retention time alignment for chromatography-mass spectrometry data. Bioinformatics 25 (16). , 2009 -
2009 | Conference Paper | Published | PUB-ID: 1919209Rearrangement Models and Single-Cut OperationsPUB | DOI
Medvedev, Paul, Rearrangement Models and Single-Cut Operations. Comparative Genomics : International Workshop, RECOMB-CG 2009, Budapest, Hungary, September 27-29, 2009. Proceedings 5817 (). Berlin, Heidelberg, 2009 -
2009 | Conference Abstract / Poster | Published | PUB-ID: 1918945Computational Short Read MetagenomicsPUB
Stoye, Jens, Computational Short Read Metagenomics. (). , 2009 -
2009 | Journal Article | Published | PUB-ID: 1634447The Sequence Analysis and Management System - SAMS-2.0: Data management and sequence analysis adapted to changing requirements from traditional sanger sequencing to ultrafast sequencing technologiesPUB | DOI | WoS | PubMed | Europe PMC
Bekel, Thomas, The Sequence Analysis and Management System - SAMS-2.0: Data management and sequence analysis adapted to changing requirements from traditional sanger sequencing to ultrafast sequencing technologies. Journal of Biotechnology 140 (1-2). , 2009 -
2008 | Conference Paper | Published | PUB-ID: 1919198Detecting Repeat Families in Incompletely Sequenced GenomesPUB | DOI
Quitzau, José Augusto Amgarten, Detecting Repeat Families in Incompletely Sequenced Genomes. Proc. of WABI 2008 5251 (). , 2008 -
2008 | Report | PUB-ID: 1970459
A space efficient representation for sparse de Bruijn subgraphsPUB | PDF
Quitzau, José Augusto Amgarten, A space efficient representation for sparse de Bruijn subgraphs. (). Bielefeld, 2008 -
2008 | Report | PUB-ID: 1970461
Online Abelian Pattern MatchingPUB | PDF
Ejaz, Tahir, Online Abelian Pattern Matching. (). Bielefeld, 2008 -
2008 | Journal Article | Published | PUB-ID: 1636699MeltDB: a software platform for the analysis and integration of metabolomics experiment dataPUB | DOI | WoS | PubMed | Europe PMC
Neuweger, Heiko, MeltDB: a software platform for the analysis and integration of metabolomics experiment data. Bioinformatics 24 (23). , 2008 -
2008 | Encyclopedia Article | Published | PUB-ID: 1918834Suffix Tree Construction in RAM (1997; Farach-Colton)PUB | DOI
Stoye, Jens, Suffix Tree Construction in RAM (1997; Farach-Colton). Encyclopedia of Algorithms (). , 2008 -
2008 | Conference Paper | Published | PUB-ID: 1919192Computation of Median Gene ClustersPUB | DOI
Böcker, Sebastian, Computation of Median Gene Clusters. Proc. of RECOMB 2008 4955 (). , 2008 -
2008 | Conference Paper | Published | PUB-ID: 1919200On Computing the Breakpoint Reuse Rate in Rearrangement ScenariosPUB | DOI
Bergeron, Anne, On Computing the Breakpoint Reuse Rate in Rearrangement Scenarios. Proc. of Recomb-CG 2008 5267 (). , 2008 -
2008 | Journal Article | Published | PUB-ID: 1587078Counting suffix arrays and stringsPUB | DOI | WoS
Schürmann, Klaus-Bernd, Counting suffix arrays and strings. THEORETICAL COMPUTER SCIENCE 395 (2-3). , 2008 -
2008 | Journal Article | Published | PUB-ID: 1586009Taxonomic composition and gene content of a methane-producing microbial community isolated from a biogas reactorPUB | DOI | WoS | PubMed | Europe PMC
Krause, Lutz, Taxonomic composition and gene content of a methane-producing microbial community isolated from a biogas reactor. JOURNAL OF BIOTECHNOLOGY 136 (1-2). , 2008 -
2008 | Journal Article | Published | PUB-ID: 1586785
Comparative Pathway Analyzer - a web server for comparative analysis, clustering and visualization of metabolic networks in multiple organismsPUB | PDF | DOI | WoS | PubMed | Europe PMC
Oehm, Sebastian, Comparative Pathway Analyzer - a web server for comparative analysis, clustering and visualization of metabolic networks in multiple organisms. NUCLEIC ACIDS RESEARCH 36 (Web Server). , 2008 -
2008 | Journal Article | Published | PUB-ID: 1783364
Phylogenetic classification of short environmental DNA fragmentsPUB | PDF | DOI | WoS | PubMed | Europe PMC
Krause, Lutz, Phylogenetic classification of short environmental DNA fragments. Nucleic Acids Research 36 (7). , 2008 -
2008 | Conference Paper | Published | PUB-ID: 1919195HP Distance via Double Cut and Join DistancePUB | DOI
Bergeron, Anne, HP Distance via Double Cut and Join Distance. Combinatorial Pattern Matching. 19th Annual Symposium, CPM 2008, Pisa, Italy, June 18-20, 2008 Proceedings (). , 2008 -
2007 | Journal Article | Published | PUB-ID: 1630781Based Upon Repeat Pattern (BURP): an algorithm to characterize the long-term evolution of Staphylococcus aureus populations based on spa polymorphismsPUB | DOI | WoS | PubMed | Europe PMC
Mellmann, Alexander, Based Upon Repeat Pattern (BURP): an algorithm to characterize the long-term evolution of Staphylococcus aureus populations based on spa polymorphisms. BMC MICROBIOLOGY 7 (1). , 2007 -
2007 | Book Chapter | Published | PUB-ID: 1918828Chapter 12: Gecko and GhostFam - Rigorous and Efficient Gene Cluster Detection in Prokaryotic GenomesPUB | DOI | PubMed | Europe PMC
Schmidt, Thomas, Chapter 12: Gecko and GhostFam - Rigorous and Efficient Gene Cluster Detection in Prokaryotic Genomes. Comparative Genomics, Volume 2 396 (). Totowa, NJ, 2007 -
2007 | Journal Article | Published | PUB-ID: 1918432Character Sets of StringsPUB | DOI
Didier, Gilles, Character Sets of Strings. Journal of Discrete Algorithms 5 (2). , 2007 -
2007 | Journal Article | Published | PUB-ID: 1595253An incomplex algorithm for fast suffix array constructionPUB | DOI | WoS
Schürmann, Klaus-Bernd, An incomplex algorithm for fast suffix array construction. SOFTWARE-PRACTICE & EXPERIENCE 37 (3). , 2007 -
2007 | Journal Article | Published | PUB-ID: 1783345
GISMO - gene identification using a support vector machine for ORF classificationPUB | PDF | DOI | WoS | PubMed | Europe PMC
Krause, Lutz, GISMO - gene identification using a support vector machine for ORF classification. Nucleic Acids Research 35 (2). , 2007 -
2006 | Journal Article | Published | PUB-ID: 1599943Panta rhei (QAlign2): an open graphical environment for sequence analysisPUB | DOI | WoS | PubMed | Europe PMC
Sammeth, Michael, Panta rhei (QAlign2): an open graphical environment for sequence analysis. BIOINFORMATICS 22 (7). , 2006 -
2006 | Journal Article | Published | PUB-ID: 1599570Efficient q-gram filters for finding all epsilon-matches over a given lengthPUB | DOI | WoS | PubMed | Europe PMC
Rasmussen, Kim R., Efficient q-gram filters for finding all epsilon-matches over a given length. JOURNAL OF COMPUTATIONAL BIOLOGY 13 (2). , 2006 -
2006 | Journal Article | Published | PUB-ID: 1599574On sorting by translocationsPUB | DOI | WoS | PubMed | Europe PMC
Bergeron, Anne, On sorting by translocations. JOURNAL OF COMPUTATIONAL BIOLOGY 13 (2). , 2006 -
2006 | Conference Paper | Published | PUB-ID: 1596811A Unifying View of Genome RearrangementsPUB | DOI | WoS
Bergeron, Anne, A Unifying View of Genome Rearrangements. Proc. of WABI 2006 4175 (). , 2006 -
2006 | Journal Article | Published | PUB-ID: 1597213Comparing tandem repeats with duplications and excisions of variable degreePUB | DOI | WoS | PubMed | Europe PMC
Sammeth, Michael, Comparing tandem repeats with duplications and excisions of variable degree. IEEE/ACM Transactions on Computational Biology and Bioinformatics 3 (4). , 2006 -
2006 | Journal Article | Published | PUB-ID: 1597313On the similarity of sets of permutations and its applications to genome comparisonPUB | DOI | WoS | PubMed | Europe PMC
Bergeron, Anne, On the similarity of sets of permutations and its applications to genome comparison. JOURNAL OF COMPUTATIONAL BIOLOGY 13 (7). , 2006 -
2006 | Conference Abstract / Poster | Published | PUB-ID: 1918946Index Structures in Biological Sequence Analysis: From Simplicity to Complexity and BackPUB
Stoye, Jens, Index Structures in Biological Sequence Analysis: From Simplicity to Complexity and Back. (). , 2006 -
2006 | Report | PUB-ID: 1970464
On Common Intervals with ErrorsPUB | PDF
Chauve, Cedric, On Common Intervals with Errors. (). Bielefeld, 2006 -
2006 | Journal Article | Published | PUB-ID: 1631957Finding novel genes in bacterial communities isolated from the environmentPUB | DOI | WoS | PubMed | Europe PMC
Krause, Lutz, Finding novel genes in bacterial communities isolated from the environment. BIOINFORMATICS 22 (14). , 2006 -
2005 | Report | PUB-ID: 1970470
Alignment of Tandem Repeats with Excision, Duplication, Substitution and Indels (EDSI)PUB | PDF | DOI
Sammeth, Michael, Alignment of Tandem Repeats with Excision, Duplication, Substitution and Indels (EDSI). (). Bielefeld, 2005 -
2005 | Conference Paper | Published | PUB-ID: 1919012An Incomplex Algorithm for Fast Suffix Array ConstructionPUB
Schürmann, Klaus-Bernd, An Incomplex Algorithm for Fast Suffix Array Construction. Proc. of ALENEX/ANALCO 2005 (). , 2005 -
2005 | Book Chapter | Published | PUB-ID: 1918824Chapter 10: The Inversion Distance ProblemPUB
Bergeron, Anne, Chapter 10: The Inversion Distance Problem. Mathematics of Evolution and Phylogeny (). , 2005 -
2005 | Conference Paper | Published | PUB-ID: 1603220On Sorting by TranslocationsPUB | DOI | WoS
Bergeron, Anne, On Sorting by Translocations. Proc. of RECOMB 2005 3500 (). , 2005 -
2005 | Journal Article | Published | PUB-ID: 1775168
Large scale hierarchical clustering of protein sequencesPUB | PDF | DOI | WoS | PubMed | Europe PMC
Krause, Antje, Large scale hierarchical clustering of protein sequences. BMC Bioinformatics 6 (1). , 2005 -
2005 | Journal Article | Published | PUB-ID: 1773302
BACCardI - a tool for the validation of genomic assemblies, assisting genome finishing and intergenome comparisonPUB | PDF | DOI | WoS | PubMed | Europe PMC
Bartels, Daniela, BACCardI - a tool for the validation of genomic assemblies, assisting genome finishing and intergenome comparison. Bioinformatics 21 (7). , 2005 -
2005 | Journal Article | Published | PUB-ID: 1918947Informatische Methoden zur Protein-IdentifikationPUB
Böcker, Sebastian, Informatische Methoden zur Protein-Identifikation. LaborPraxis 29 (10). , 2005 -
2005 | Conference Paper | Published | PUB-ID: 1601348Protein Annotation by Secondary Structure Based Alignments (PASSTA)PUB | DOI | WoS
Bannert, Constantin, Protein Annotation by Secondary Structure Based Alignments (PASSTA). Proc. of CompLife 2005 3695 (). , 2005 -
2005 | Conference Paper | Published | PUB-ID: 1601361Alignment of Tandem Repeats with Excision, Duplication, Substitution and Indels (EDSI)PUB | DOI | WoS
Sammeth, Michael, Alignment of Tandem Repeats with Excision, Duplication, Substitution and Indels (EDSI). Proc. of WABI 2005 3692 (). , 2005 -
2005 | Conference Paper | Published | PUB-ID: 1603216Efficient q-Gram Filters for Finding All ε-Matches Over a Given LengthPUB | DOI | WoS
Rasmussen, Kim R., Efficient q-Gram Filters for Finding All ε-Matches Over a Given Length. Proc. of RECOMB 2005 3500 (). , 2005 -
2005 | Conference Paper | Published | PUB-ID: 1919026Counting Suffix Arrays and StringsPUB | DOI
Schürmann, Klaus-Bernd, Counting Suffix Arrays and Strings. Proc. of SPIRE 2005 3772 (). , 2005 -
2005 | Report | PUB-ID: 1970472
Counting Suffix Arrays and StringsPUB | PDF
Schürmann, Klaus-Bernd, Counting Suffix Arrays and Strings. (). Bielefeld, 2005 -
2004 | Conference (Editor) | Published | PUB-ID: 1918823Proceedings of the German Conference on Bioinformatics, GCB 2004PUB
Giegerich, Robert, Proceedings of the German Conference on Bioinformatics, GCB 2004. P-53 (). Bonn, 2004 -
2004 | Conference Paper | Published | PUB-ID: 1607260Quadratic Time Algorithms for Finding Common Intervals in Two and More SequencesPUB | DOI | WoS
Schmidt, Thomas, Quadratic Time Algorithms for Finding Common Intervals in Two and More Sequences. Proc. of CPM 2004 3109 (). , 2004 -
2004 | Conference Paper | Published | PUB-ID: 1606286Suboptimal Local Alignments across Multiple Scoring SchemesPUB | DOI | WoS
Michael, Morris, Suboptimal Local Alignments across Multiple Scoring Schemes. Proc. of WABI 2004 3240 (). , 2004 -
2004 | Journal Article | Published | PUB-ID: 1773554
Correction: Benchmarking tools for the alignment of functional noncoding DNAPUB | PDF | DOI | WoS | PubMed | Europe PMC
Pollard, Daniel A., Correction: Benchmarking tools for the alignment of functional noncoding DNA. BMC Bioinformatics 5 (1). , 2004 -
2004 | Journal Article | Published | PUB-ID: 1773560
Algorithmic complexity of protein identification: combinatorics of weighted stringsPUB | PDF | DOI | WoS
Cieliebak, Mark, Algorithmic complexity of protein identification: combinatorics of weighted strings. Discrete Applied Mathematics 137 (1). , 2004 -
2004 | Journal Article | Published | PUB-ID: 1773312
Benchmarking tools for the alignment of functional noncoding DNAPUB | PDF | DOI | WoS | PubMed | Europe PMC
Pollard, Daniel A., Benchmarking tools for the alignment of functional noncoding DNA. BMC Bioinformatics 5 (1). , 2004 -
2004 | Journal Article | Published | PUB-ID: 1773569
Linear time algorithms for finding and representing all the tandem repeats in a stringPUB | PDF | DOI | WoS
Gusfield, Dan, Linear time algorithms for finding and representing all the tandem repeats in a string. Journal of computer and system sciences 69 (4). , 2004 -
2004 | Conference Paper | Published | PUB-ID: 1607263Reversal Distance without Hurdles and FortressesPUB | DOI | WoS
Bergeron, Anne, Reversal Distance without Hurdles and Fortresses. Proc. of CPM 2004 3109 (). , 2004 -
2003 | Report | PUB-ID: 1970475
Suffix Tree Construction and Storage with Limited Main MemoryPUB | PDF
Schürmann, Klaus-Bernd, Suffix Tree Construction and Storage with Limited Main Memory. (). Bielefeld, 2003 -
2003 | Journal Article | Published | PUB-ID: 1612664The European Conference on Computational BiologyPUB | DOI | WoS | PubMed | Europe PMC
Heber, Steffen, The European Conference on Computational Biology. Drug Discovery Today 8 (3). , 2003 -
2003 | Journal Article | Published | PUB-ID: 1918949Finden, fast ohne zu suchen: Indexstrukturen in der BioinformatikPUB
Giegerich, Robert, Finden, fast ohne zu suchen: Indexstrukturen in der Bioinformatik. Forschung an der Universität Bielefeld 26 (). , 2003 -
2003 | Conference Paper | Published | PUB-ID: 1919005Evaluation of the Jumping Alignment Algorithm with Artificial and Biological DataPUB
Bannert, Constantin, Evaluation of the Jumping Alignment Algorithm with Artificial and Biological Data. Proc. of GCB 2003 (). , 2003 -
2003 | Journal Article | Published | PUB-ID: 1610397
Efficient implementation of lazy suffix treesPUB | PDF | DOI | WoS
Giegerich, Robert, Efficient implementation of lazy suffix trees. SOFTWARE-PRACTICE & EXPERIENCE 33 (11). , 2003 -
2003 | Journal Article | Published | PUB-ID: 1609403
Divide-and-conquer multiple alignment with segment-based constraintsPUB | PDF | DOI | WoS | PubMed | Europe PMC
Sammeth, Michael, Divide-and-conquer multiple alignment with segment-based constraints. BIOINFORMATICS 19 (Suppl 2). , 2003 -
2003 | Conference Paper | Published | PUB-ID: 1610433On the similarity of sets of permutations and its applications to genome comparisonPUB | DOI | WoS
Bergeron, Anne, On the similarity of sets of permutations and its applications to genome comparison. Proc. of COCOON 2003 2697 (). , 2003 -
2003 | Journal Article | Published | PUB-ID: 1610503
QAlign: quality-based multiple alignments with dynamic phylogenetic analysisPUB | PDF | DOI | WoS | PubMed | Europe PMC
Sammeth, Michael, QAlign: quality-based multiple alignments with dynamic phylogenetic analysis. BIOINFORMATICS 19 (12). , 2003 -
2003 | Report | PUB-ID: 1970477
On the Similarity of Sets of Permutations and its Applications to Genome ComparisonPUB | PDF
Bergeron, Anne, On the Similarity of Sets of Permutations and its Applications to Genome Comparison. (). Bielefeld, 2003 -
2002 | Conference Abstract / Poster | Published | PUB-ID: 1918951Index Structures for Large Sequence Data: Suffix Trees and Affix TreesPUB
Stoye, Jens, Index Structures for Large Sequence Data: Suffix Trees and Affix Trees. Lecture Notes in Informatics P-20 (Ergänzungsband). , 2002 -
2002 | Conference Paper | Published | PUB-ID: 1919000Algorithmic Complexity of Protein Identification: Searching in Weighted StringsPUB
Cieliebak, Marc, Algorithmic Complexity of Protein Identification: Searching in Weighted Strings. Proc. of IFIP TCS 2002 (). , 2002 -
2002 | Journal Article | Published | PUB-ID: 1773578
A novel approach to remote homology detection: jumping alignmentsPUB | PDF | DOI | WoS | PubMed | Europe PMC
Spang, Rainer, A novel approach to remote homology detection: jumping alignments. Journal of Computational Biology 9 (5). , 2002 -
2002 | Journal Article | Published | PUB-ID: 1773332
Simple and flexible detection of contiguous repeats using a suffix treePUB | PDF | DOI | WoS
Stoye, Jens, Simple and flexible detection of contiguous repeats using a suffix tree. Theoretical Computer Science 270 (1-2). , 2002 -
2002 | Journal Article | Published | PUB-ID: 1773329
Common intervals and sorting by reversals: a marriage of necessityPUB | PDF | DOI | WoS | PubMed | Europe PMC
Bergeron, Anne, Common intervals and sorting by reversals: a marriage of necessity. Bioinformatics 18 (Suppl 2). , 2002 -
2002 | Conference Paper | Published | PUB-ID: 1918995Resampling Methods in Physical MappingPUB
Heber, Steffen, Resampling Methods in Physical Mapping. Proc. of GfKl 2000 (). , 2002 -
2001 | Journal Article | Published | PUB-ID: 1773335
REPuter: the manifold applications of repeat analysis on a genomic scalePUB | PDF | DOI | WoS | PubMed | Europe PMC
Kurtz, Stefan, REPuter: the manifold applications of repeat analysis on a genomic scale. Nucleic Acids Research 29 (22). , 2001 -
2001 | Conference Paper | Published | PUB-ID: 1918992Finding all Common Intervals of k PermutationsPUB | DOI
Heber, Steffen, Finding all Common Intervals of k Permutations. Proc. of CPM 2001 2089 (). , 2001 -
2001 | Conference Paper | Published | PUB-ID: 1880197Algorithms for Finding Gene ClustersPUB | DOI
Heber, Steffen, Algorithms for Finding Gene Clusters. Proc. of WABI 2001 2149 (). Berlin, 2001 -
2001 | Report | PUB-ID: 1970479Algorithmic Complexity of Protein Identification: Combinatorics of Weighted StringsPUB
Cieliebak, Marc, Algorithmic Complexity of Protein Identification: Combinatorics of Weighted Strings. (). ETH Zürich, Dept. of Computer Science, 2001 -
2000 | Conference Paper | Published | PUB-ID: 1918981Contig Selection in Physical MappingPUB | DOI | WoS | PubMed | Europe PMC
Heber, Steffen, Contig Selection in Physical Mapping. Proc. of RECOMB 2000 (). , 2000 -
2000 | Book Chapter | Published | PUB-ID: 1918817Finding Maximal Pairs with Bounded GapPUB
Brodal, Gerth S., Finding Maximal Pairs with Bounded Gap. Matching Patterns (Journal of Discrete Algorithms) (). , 2000 -
2000 | Journal Article | Published | PUB-ID: 1773345
The SYSTERS protein sequence cluster setPUB | PDF | DOI | WoS | PubMed | Europe PMC
Krause, Antje, The SYSTERS protein sequence cluster set. Nucleic Acids Research 28 (1). , 2000 -
2000 | Journal Article | Published | PUB-ID: 1773572
Contig selection in physical mappingPUB | PDF | DOI | WoS | PubMed | Europe PMC
Heber, Steffen, Contig selection in physical mapping. Journal of Computational Biology 7 (3-4). , 2000 -
2000 | Conference Paper | Published | PUB-ID: 1918985Sequence Database Search Using Jumping AlignmentsPUB | PubMed | Europe PMC
Spang, Rainer, Sequence Database Search Using Jumping Alignments. Proc. of ISMB 2000 (). , 2000 -
2000 | Report | PUB-ID: 1970490
Affix TreesPUB | PDF
Stoye, Jens, Affix Trees. (). Technische Fakultät der Universität Bielefeld, 2000 -
2000 | Journal Article | Published | PUB-ID: 1773341
An iterative method for faster sum-of-pairs multiple sequence alignmentPUB | PDF | DOI | WoS | PubMed | Europe PMC
Reinert, Knut, An iterative method for faster sum-of-pairs multiple sequence alignment. Bioinformatics 16 (9). , 2000 -
2000 | Conference Paper | Published | PUB-ID: 1918988Computation and Visualization of Degenerate Repeats in Complete GenomesPUB | PubMed | Europe PMC
Kurtz, Stefan, Computation and Visualization of Degenerate Repeats in Complete Genomes. Proc. of ISMB 2000 (). , 2000 -
2000 | Conference (Editor) | Published | PUB-ID: 1918813Proceedings of the German Conference on Bioinformatics, GCB 2000PUB
Bornberg-Bauer, Erich, Proceedings of the German Conference on Bioinformatics, GCB 2000. (). Berlin, 2000 -
1999 | Conference Paper | Published | PUB-ID: 1620435Efficient implementation of lazy suffix treesPUB | DOI | WoS
Giegerich, Robert, Efficient implementation of lazy suffix trees. Algorithm Engineering. 3rd International Workshop, WAE’99 London, UK, July 19–21, 1999 Proceedings 1668 (). , 1999 -
1999 | Conference Paper | Published | PUB-ID: 1918978Combining Divide-and-Conquer, the A*-Algorithm, and Successive Realignment Approaches to Speed up Multiple Sequence AlignmentPUB | Download (ext.)
Reinert, Knut, Combining Divide-and-Conquer, the A*-Algorithm, and Successive Realignment Approaches to Speed up Multiple Sequence Alignment. Proc. of GCB 1999 (). , 1999 -
1999 | Report | PUB-ID: 1970495Consistent Equivalence Relations: A Set-Theoretical Framework for Multiple Sequence AlignmentPUB
Morgenstern, Burkhard, Consistent Equivalence Relations: A Set-Theoretical Framework for Multiple Sequence Alignment. (). Forschungsschwerpunkt Mathematisierung, Universität Bielefeld, 1999 -
1999 | Report | PUB-ID: 1970509Finding Maximal Pairs with Bounded GapPUB
Brodal, Gerth S., Finding Maximal Pairs with Bounded Gap. (). BRICS, Department of Computer Science, University of Aarhus, 1999 -
1999 | Conference Paper | Published | PUB-ID: 1918971Finding Maximal Pairs with Bounded GapPUB | DOI
Brodal, Gerth S., Finding Maximal Pairs with Bounded Gap. Proc. of CPM 1999 1645 (). , 1999 -
1998 | Journal Article | Published | PUB-ID: 2488102The Number of Standard and of Effective Multiple AlignmentsPUB
Dress, Andreas, The Number of Standard and of Effective Multiple Alignments. Appl. Math. Lett. 11 (4). , 1998 -
1998 | Journal Article | Published | PUB-ID: 1918538Die Bedeutung der Zusammenarbeit der Disziplinen in der Anwendung - erläutert anhand von BeispielenPUB
Hildebrand, Martin, Die Bedeutung der Zusammenarbeit der Disziplinen in der Anwendung - erläutert anhand von Beispielen. Der Mathematikunterricht 44 (6). , 1998 -
1998 | Journal Article | Published | PUB-ID: 1667771
Multiple sequence alignment with the Divide-and-Conquer method.PUB | PDF | DOI | WoS | PubMed | Europe PMC
Stoye, Jens, Multiple sequence alignment with the Divide-and-Conquer method.. Gene 211 (2). , 1998 -
1998 | Journal Article | Published | PUB-ID: 1625402
Rose: generating sequence familiesPUB | PDF | DOI | WoS | PubMed | Europe PMC
Stoye, Jens, Rose: generating sequence families. BIOINFORMATICS 14 (2). , 1998 -
1998 | Report | PUB-ID: 1970515Simple and Flexible Detection of Contiguous Repeats Using a Suffix TreePUB
Stoye, Jens, Simple and Flexible Detection of Contiguous Repeats Using a Suffix Tree. (). Department of Computer Science, University of California, Davis, 1998 -
1998 | Conference Paper | Published | PUB-ID: 1918964Simple and Flexible Detection of Contiguous Repeats Using a Suffix Tree (Preliminary Version)PUB | DOI
Stoye, Jens, Simple and Flexible Detection of Contiguous Repeats Using a Suffix Tree (Preliminary Version). Proc. of CPM 1998 1448 (). , 1998 -
1998 | Report | PUB-ID: 1970513Linear Time Algorithms for Finding and Representing all the Tandem Repeats in a StringPUB
Gusfield, Dan, Linear Time Algorithms for Finding and Representing all the Tandem Repeats in a String. (). Department of Computer Science, University of California, Davis, 1998 -
1997 | Journal Article | Published | PUB-ID: 1773358Two applications of the Divide & Conquer principle in the molecular sciencesPUB | DOI | WoS
Brinkmann, Gunnar, Two applications of the Divide & Conquer principle in the molecular sciences. Mathematical programming 79 (1-3). , 1997 -
1997 | Journal Article | Published | PUB-ID: 2488107DCA: An efficient implementation of the divide-and-conquer approach to simultaneous multiple sequence alignmentPUB
Stoye, Jens, DCA: An efficient implementation of the divide-and-conquer approach to simultaneous multiple sequence alignment. CABIOS 13 (6). , 1997 -
1997 | Report | PUB-ID: 1970526On Simultaneous versus Iterative Multiple Sequence AlignmentPUB
Perrey, Sören W., On Simultaneous versus Iterative Multiple Sequence Alignment. (). Forschungsschwerpunkt Mathematisierung, Universität Bielefeld, 1997 -
1997 | Report | PUB-ID: 1970517Rose: Generating Sequence FamiliesPUB
Stoye, Jens, Rose: Generating Sequence Families. (). Technische Fakultät der Universität Bielefeld, 1997 -
1997 | Report | PUB-ID: 1970529Two Applications of the Divide & Conquer Principle in the Molecular SciencesPUB
Brinkmann, Gunnar, Two Applications of the Divide & Conquer Principle in the Molecular Sciences. (). Forschungsschwerpunkt Mathematisierung, Universität Bielefeld, 1997 -
1997 | Conference Paper | Published | PUB-ID: 1667885Generating benchmarks for multiple sequence alignments and phylogenetic reconstructionsPUB | PubMed | Europe PMC
Stoye, Jens, Generating benchmarks for multiple sequence alignments and phylogenetic reconstructions. Proc. of ISMB 1997 (). , 1997 -
1997 | Journal Article | Published | PUB-ID: 1773355
Improving the divide-and-conquer approach to sum-of-pairs multiple sequence alignmentPUB | PDF | DOI | WoS
Stoye, Jens, Improving the divide-and-conquer approach to sum-of-pairs multiple sequence alignment. Applied mathematics letters 10 (2). , 1997 -
1997 | Report | PUB-ID: 1970523On the Number of Standard and Effective Multiple AlignmentsPUB
Dress, Andreas, On the Number of Standard and Effective Multiple Alignments. (). Forschungsschwerpunkt Mathematisierung, Universität Bielefeld, 1997 -
1997 | Report | PUB-ID: 1970520FDCA: Fast and Accurate Approximation to Sum-of-Pairs Score Optimal Multiple Sequence AlignmentPUB
Perrey, Sören W., FDCA: Fast and Accurate Approximation to Sum-of-Pairs Score Optimal Multiple Sequence Alignment. (). Forschungsschwerpunkt Mathematisierung, Universität Bielefeld, 1997 -
1997 | Report | PUB-ID: 1970532Divide-and-Conquer Multiple Sequence AlignmentPUB
Stoye, Jens, Divide-and-Conquer Multiple Sequence Alignment. (). Technische Fakultät der Universität Bielefeld, 1997 -
1996 | Report | PUB-ID: 1970533Fast Approximation to the NP-hard Problem of Multiple Sequence AlignmentPUB
Perrey, Sören W., Fast Approximation to the NP-hard Problem of Multiple Sequence Alignment. (). Dept. of Mathematics, Massey University, Palmerston North, New Zealand, 1996 -
1996 | Journal Article | Published | PUB-ID: 1773351A general method for fast multiple sequence alignmentPUB | DOI | WoS | PubMed | Europe PMC
Tönges, Udo, A general method for fast multiple sequence alignment. Gene 172 (1). , 1996 -
1996 | Report | PUB-ID: 1970535Improving the Divide-and-Conquer Approach to Sum-of-Pairs Multiple Sequence AlignmentPUB
Stoye, Jens, Improving the Divide-and-Conquer Approach to Sum-of-Pairs Multiple Sequence Alignment. (). Forschungsschwerpunkt Mathematisierung, Universität Bielefeld, 1996 -
1996 | Report | PUB-ID: 1970537A General Method for Fast Multiple Sequence AlignmentPUB
Tönges, Udo, A General Method for Fast Multiple Sequence Alignment. (). Forschungsschwerpunkt Mathematisierung, Universität Bielefeld, 1996