The Solution Space of Sorting by DCJ

Dias Vieira Braga M, Stoye J (2010)
Journal of Computational Biology 17(9): 1145-1165.

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Zeitschriftenaufsatz | Veröffentlicht | Englisch
Erscheinungsjahr
Zeitschriftentitel
Journal of Computational Biology
Band
17
Ausgabe
9
Seite(n)
1145-1165
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eISSN
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Dias Vieira Braga M, Stoye J. The Solution Space of Sorting by DCJ. Journal of Computational Biology. 2010;17(9):1145-1165.
Dias Vieira Braga, M., & Stoye, J. (2010). The Solution Space of Sorting by DCJ. Journal of Computational Biology, 17(9), 1145-1165. doi:10.1089/cmb.2010.0109
Dias Vieira Braga, M., and Stoye, J. (2010). The Solution Space of Sorting by DCJ. Journal of Computational Biology 17, 1145-1165.
Dias Vieira Braga, M., & Stoye, J., 2010. The Solution Space of Sorting by DCJ. Journal of Computational Biology, 17(9), p 1145-1165.
M. Dias Vieira Braga and J. Stoye, “The Solution Space of Sorting by DCJ”, Journal of Computational Biology, vol. 17, 2010, pp. 1145-1165.
Dias Vieira Braga, M., Stoye, J.: The Solution Space of Sorting by DCJ. Journal of Computational Biology. 17, 1145-1165 (2010).
Dias Vieira Braga, Marília, and Stoye, Jens. “The Solution Space of Sorting by DCJ”. Journal of Computational Biology 17.9 (2010): 1145-1165.

22 Zitationen in Europe PMC

Daten bereitgestellt von Europe PubMed Central.

Finding local genome rearrangements.
Simonaitis P, Swenson KM., Algorithms Mol Biol 13(), 2018
PMID: 29755580
On the rank-distance median of 3 permutations.
Chindelevitch L, Pereira Zanetti JP, Meidanis J., BMC Bioinformatics 19(suppl 6), 2018
PMID: 29745865
EqualTDRL: illustrating equivalent tandem duplication random loss rearrangements.
Hartmann T, Bernt M, Middendorf M., BMC Bioinformatics 19(1), 2018
PMID: 29843612
Genomic Distance with High Indel Costs.
da Silva PH, Machado R, Dantas S, Braga MDV., IEEE/ACM Trans Comput Biol Bioinform 14(3), 2017
PMID: 28113562
Approximating the DCJ distance of balanced genomes in linear time.
Rubert DP, Feijão P, Braga MDV, Stoye J, Martinez FHV., Algorithms Mol Biol 12(), 2017
PMID: 28293275
Implicit Transpositions in DCJ Scenarios.
Avdeyev P, Jiang S, Alekseyev MA., Front Genet 8(), 2017
PMID: 29312438
eSTGt: a programming and simulation environment for population dynamics.
Spiro A, Shapiro E., BMC Bioinformatics 17(1), 2016
PMID: 27117841
Models and algorithms for genome rearrangement with positional constraints.
Swenson KM, Simonaitis P, Blanchette M., Algorithms Mol Biol 11(), 2016
PMID: 27190550
Fast ancestral gene order reconstruction of genomes with unequal gene content.
Feijão P, Araujo E., BMC Bioinformatics 17(suppl 14), 2016
PMID: 28185578
Genome rearrangements with indels in intergenes restrict the scenario space.
Bulteau L, Fertin G, Tannier E., BMC Bioinformatics 17(suppl 14), 2016
PMID: 28185582
Reconstruction of ancestral gene orders using intermediate genomes.
Feijão P., BMC Bioinformatics 16 Suppl 14(), 2015
PMID: 26451811
DCJ-Indel sorting revisited.
Compeau PE., Algorithms Mol Biol 8(1), 2013
PMID: 23452758
Extending the algebraic formalism for genome rearrangements to include linear chromosomes.
Feijão P, Meidanis J., IEEE/ACM Trans Comput Biol Bioinform 10(4), 2013
PMID: 24334378
DCJ-indel and DCJ-substitution distances with distinct operation costs.
da Silva PH, Machado R, Dantas S, Braga MD., Algorithms Mol Biol 8(1), 2013
PMID: 23879938
On the inversion-indel distance.
Willing E, Zaccaria S, Braga MD, Stoye J., BMC Bioinformatics 14 Suppl 15(), 2013
PMID: 24564182
Sorting genomes with rearrangements and segmental duplications through trajectory graphs.
Shao M, Lin Y, Moret B., BMC Bioinformatics 14 Suppl 15(), 2013
PMID: 24564345
Sampling solution traces for the problem of sorting permutations by signed reversals.
Baudet C, Dias Z, Sagot MF., Algorithms Mol Biol 7(1), 2012
PMID: 22704580
Restricted DCJ-indel model: sorting linear genomes with DCJ and indels.
da Silva PH, Machado R, Dantas S, Braga MD., BMC Bioinformatics 13 Suppl 19(), 2012
PMID: 23281630
Promoting ranking diversity for genomics search with relevance-novelty combined model.
Yin X, Li Z, Huang JX, Hu X., BMC Bioinformatics 12 Suppl 5(), 2011
PMID: 21989180
Double cut and join with insertions and deletions.
Braga MD, Willing E, Stoye J., J Comput Biol 18(9), 2011
PMID: 21899423
Genomic distance under gene substitutions.
Braga MD, Machado R, Ribeiro LC, Stoye J., BMC Bioinformatics 12 Suppl 9(), 2011
PMID: 22151231
On the weight of indels in genomic distances.
Braga MD, Machado R, Ribeiro LC, Stoye J., BMC Bioinformatics 12 Suppl 9(), 2011
PMID: 22151784

12 References

Daten bereitgestellt von Europe PubMed Central.

Breakpoint graphs and ancestral genome reconstructions.
Alekseyev MA, Pevzner PA., Genome Res. 19(5), 2009
PMID: 19218533

Bergeron, Proc. JOBIM 2002(), 2002

AUTHOR UNKNOWN, 0
Exploring the solution space of sorting by reversals, with experiments and an application to evolution.
Braga MD, Sagot MF, Scornavacca C, Tannier E., IEEE/ACM Trans Comput Biol Bioinform 5(3), 2008
PMID: 18670039

Braga, Lect. Notes Bioinform. 5817(), 2009

AUTHOR UNKNOWN, 0

Hannenhalli, Proc. FOCS 1995(), 1995

Ouangraoua, Lect. Notes Bioinform. 5817(), 2010

AUTHOR UNKNOWN, 0
An algorithm to enumerate sorting reversals for signed permutations.
Siepel AC., J. Comput. Biol. 10(3-4), 2003
PMID: 12935346
Multichromosomal median and halving problems under different genomic distances.
Tannier E, Zheng C, Sankoff D., BMC Bioinformatics 10(), 2009
PMID: 19386099
Efficient sorting of genomic permutations by translocation, inversion and block interchange.
Yancopoulos S, Attie O, Friedberg R., Bioinformatics 21(16), 2005
PMID: 15951307

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