Divide-and-conquer multiple alignment with segment-based constraints

Sammeth M, Morgenstern B, Stoye J (2003)
BIOINFORMATICS 19(Suppl 2): ii189-ii195.

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Abstract / Bemerkung
A large number of methods for multiple sequence alignment are currenty available. Recent benchmarking tests demonstrated that strengths and drawbacks of these methods differ substantially. Global strategies can be outperformed by approaches based on local similarities and vice versa, depending on the characteristics of the input sequences. In recent years, mixed approaches that include both global and local features have shown promising results. Herein, we introduce a new algorithm for multiple sequence alignment that integrates the global divide-and-conquer approach with the local segment-based approach, thereby combining the strengths of those two strategies.
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BIOINFORMATICS
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19
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Suppl 2
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ii189-ii195
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Sammeth M, Morgenstern B, Stoye J. Divide-and-conquer multiple alignment with segment-based constraints. BIOINFORMATICS. 2003;19(Suppl 2):ii189-ii195.
Sammeth, M., Morgenstern, B., & Stoye, J. (2003). Divide-and-conquer multiple alignment with segment-based constraints. BIOINFORMATICS, 19(Suppl 2), ii189-ii195. doi:10.1093/bioinformatics/btg1077
Sammeth, M., Morgenstern, B., and Stoye, J. (2003). Divide-and-conquer multiple alignment with segment-based constraints. BIOINFORMATICS 19, ii189-ii195.
Sammeth, M., Morgenstern, B., & Stoye, J., 2003. Divide-and-conquer multiple alignment with segment-based constraints. BIOINFORMATICS, 19(Suppl 2), p ii189-ii195.
M. Sammeth, B. Morgenstern, and J. Stoye, “Divide-and-conquer multiple alignment with segment-based constraints”, BIOINFORMATICS, vol. 19, 2003, pp. ii189-ii195.
Sammeth, M., Morgenstern, B., Stoye, J.: Divide-and-conquer multiple alignment with segment-based constraints. BIOINFORMATICS. 19, ii189-ii195 (2003).
Sammeth, Michael, Morgenstern, Burkhard, and Stoye, Jens. “Divide-and-conquer multiple alignment with segment-based constraints”. BIOINFORMATICS 19.Suppl 2 (2003): ii189-ii195.
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6 Zitationen in Europe PMC

Daten bereitgestellt von Europe PubMed Central.

RE-MuSiC: a tool for multiple sequence alignment with regular expression constraints.
Chung YS, Lee WH, Tang CY, Lu CL., Nucleic Acids Res 35(web server issue), 2007
PMID: 17488842
Global multiple-sequence alignment with repeats.
Sammeth M, Heringa J., Proteins 64(1), 2006
PMID: 16609972
Multiple sequence alignment with user-defined constraints at GOBICS.
Morgenstern B, Werner N, Prohaska SJ, Steinkamp R, Schneider I, Subramanian AR, Stadler PF, Weyer-Menkhoff J., Bioinformatics 21(7), 2005
PMID: 15546937
DIALIGN: multiple DNA and protein sequence alignment at BiBiServ.
Morgenstern B., Nucleic Acids Res 32(web server issue), 2004
PMID: 15215344
A novel method for multiple alignment of sequences with repeated and shuffled elements.
Raphael B, Zhi D, Tang H, Pevzner P., Genome Res 14(11), 2004
PMID: 15520295

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