Generating benchmarks for multiple sequence alignments and phylogenetic reconstructions
Stoye J, Evers D, Meyer F (1997)
In: Proc. of ISMB 1997. 303-306.
Konferenzbeitrag
| Veröffentlicht | Englisch
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Autor*in
Stoye, JensUniBi 
;
Evers, Dirk;
Meyer, Folker
;
Evers, Dirk;
Meyer, FolkerAbstract / Bemerkung
We present a new probabilistic model of evolution of RNA-, DNA-, or protein-like sequences and a tool rose that implements this model. By insertion, deletion and substitution of characters, a family of sequences is created from a common ancestor. During this artificial evolutionary process, the "true" history is logged and the "correct" multiple sequence alignment is created simultaneously. We also allow for varying rates of mutation within the sequences making it possible to establish so-called sequence motifs. The results are suitable for the evaluation of methods in multiple sequence alignment computation and the prediction of phylogenetic relationships.
Erscheinungsjahr
1997
Titel des Konferenzbandes
Proc. of ISMB 1997
Seite(n)
303-306
Konferenz
ISMB 1997
Konferenzort
Halkidiki, Greece
ISSN
1553-0833
Page URI
https://pub.uni-bielefeld.de/record/1667885
Zitieren
Stoye J, Evers D, Meyer F. Generating benchmarks for multiple sequence alignments and phylogenetic reconstructions. In: Proc. of ISMB 1997. 1997: 303-306.
Stoye, J., Evers, D., & Meyer, F. (1997). Generating benchmarks for multiple sequence alignments and phylogenetic reconstructions. Proc. of ISMB 1997, 303-306.
Stoye, Jens, Evers, Dirk, and Meyer, Folker. 1997. “Generating benchmarks for multiple sequence alignments and phylogenetic reconstructions”. In Proc. of ISMB 1997, 303-306.
Stoye, J., Evers, D., and Meyer, F. (1997). “Generating benchmarks for multiple sequence alignments and phylogenetic reconstructions” in Proc. of ISMB 1997 303-306.
Stoye, J., Evers, D., & Meyer, F., 1997. Generating benchmarks for multiple sequence alignments and phylogenetic reconstructions. In Proc. of ISMB 1997. pp. 303-306.
J. Stoye, D. Evers, and F. Meyer, “Generating benchmarks for multiple sequence alignments and phylogenetic reconstructions”, Proc. of ISMB 1997, 1997, pp.303-306.
Stoye, J., Evers, D., Meyer, F.: Generating benchmarks for multiple sequence alignments and phylogenetic reconstructions. Proc. of ISMB 1997. p. 303-306. (1997).
Stoye, Jens, Evers, Dirk, and Meyer, Folker. “Generating benchmarks for multiple sequence alignments and phylogenetic reconstructions”. Proc. of ISMB 1997. 1997. 303-306.
Daten bereitgestellt von European Bioinformatics Institute (EBI)
7 Zitationen in Europe PMC
Daten bereitgestellt von Europe PubMed Central.
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Earl D, Nguyen N, Hickey G, Harris RS, Fitzgerald S, Beal K, Seledtsov I, Molodtsov V, Raney BJ, Clawson H, Kim J, Kemena C, Chang JM, Erb I, Poliakov A, Hou M, Herrero J, Kent WJ, Solovyev V, Darling AE, Ma J, Notredame C, Brudno M, Dubchak I, Haussler D, Paten B., Genome Res 24(12), 2014
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Upcoming challenges for multiple sequence alignment methods in the high-throughput era.
Kemena C, Notredame C., Bioinformatics 25(19), 2009
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Kemena C, Notredame C., Bioinformatics 25(19), 2009
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MAFFT version 5: improvement in accuracy of multiple sequence alignment.
Katoh K, Kuma K, Toh H, Miyata T., Nucleic Acids Res 33(2), 2005
PMID: 15661851
Katoh K, Kuma K, Toh H, Miyata T., Nucleic Acids Res 33(2), 2005
PMID: 15661851
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Miller W, Makova KD, Nekrutenko A, Hardison RC., Annu Rev Genomics Hum Genet 5(), 2004
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Miller W, Makova KD, Nekrutenko A, Hardison RC., Annu Rev Genomics Hum Genet 5(), 2004
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Pollard DA, Bergman CM, Stoye J, Celniker SE, Eisen MB., BMC Bioinformatics 5(), 2004
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Pollard DA, Bergman CM, Stoye J, Celniker SE, Eisen MB., BMC Bioinformatics 5(), 2004
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Blanchette M, Green ED, Miller W, Haussler D., Genome Res 14(12), 2004
PMID: 15574820
Blanchette M, Green ED, Miller W, Haussler D., Genome Res 14(12), 2004
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MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform.
Katoh K, Misawa K, Kuma K, Miyata T., Nucleic Acids Res 30(14), 2002
PMID: 12136088
Katoh K, Misawa K, Kuma K, Miyata T., Nucleic Acids Res 30(14), 2002
PMID: 12136088
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