A Unified Approach for Reconstructing Ancient Gene Clusters
Stoye J, Wittler R (2009)
IEEE/ACM Transactions on Computational Biology and Bioinformatics 6(3): 387-400.
Zeitschriftenaufsatz
| Veröffentlicht | Englisch
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Autor*in
Einrichtung
Stichworte
gene order;
Comparative genomics;
gene cluster;
gene cluster;
reconstruction;
phylogeny;
parsimony;
consistency
Erscheinungsjahr
2009
Zeitschriftentitel
IEEE/ACM Transactions on Computational Biology and Bioinformatics
Band
6
Ausgabe
3
Seite(n)
387-400
ISSN
1545-5963
Page URI
https://pub.uni-bielefeld.de/record/1591507
Zitieren
Stoye J, Wittler R. A Unified Approach for Reconstructing Ancient Gene Clusters. IEEE/ACM Transactions on Computational Biology and Bioinformatics. 2009;6(3):387-400.
Stoye, J., & Wittler, R. (2009). A Unified Approach for Reconstructing Ancient Gene Clusters. IEEE/ACM Transactions on Computational Biology and Bioinformatics, 6(3), 387-400. https://doi.org/10.1109/TCBB.2008.135
Stoye, Jens, and Wittler, Roland. 2009. “A Unified Approach for Reconstructing Ancient Gene Clusters”. IEEE/ACM Transactions on Computational Biology and Bioinformatics 6 (3): 387-400.
Stoye, J., and Wittler, R. (2009). A Unified Approach for Reconstructing Ancient Gene Clusters. IEEE/ACM Transactions on Computational Biology and Bioinformatics 6, 387-400.
Stoye, J., & Wittler, R., 2009. A Unified Approach for Reconstructing Ancient Gene Clusters. IEEE/ACM Transactions on Computational Biology and Bioinformatics, 6(3), p 387-400.
J. Stoye and R. Wittler, “A Unified Approach for Reconstructing Ancient Gene Clusters”, IEEE/ACM Transactions on Computational Biology and Bioinformatics, vol. 6, 2009, pp. 387-400.
Stoye, J., Wittler, R.: A Unified Approach for Reconstructing Ancient Gene Clusters. IEEE/ACM Transactions on Computational Biology and Bioinformatics. 6, 387-400 (2009).
Stoye, Jens, and Wittler, Roland. “A Unified Approach for Reconstructing Ancient Gene Clusters”. IEEE/ACM Transactions on Computational Biology and Bioinformatics 6.3 (2009): 387-400.
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Daten bereitgestellt von European Bioinformatics Institute (EBI)
9 Zitationen in Europe PMC
Daten bereitgestellt von Europe PubMed Central.
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PMID: 26887011
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PMID: 26887011
On the identification of conflicting contiguities in ancestral genome reconstruction.
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PMID: 24106802
Ouangraoua A, Raffinot M., J Comput Biol 21(1), 2014
PMID: 24106802
Overview of tomato (Solanum lycopersicum) candidate pathogen recognition genes reveals important Solanum R locus dynamics.
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PMID: 23163550
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PMID: 23163550
Rearrangement-based phylogeny using the Single-Cut-or-Join operation.
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PMID: 23702549
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PMID: 23702549
Linearization of ancestral multichromosomal genomes.
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PMID: 23281593
Maňuch J, Patterson M, Wittler R, Chauve C, Tannier E., BMC Bioinformatics 13 Suppl 19(), 2012
PMID: 23281593
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PMID: 21685079
Gavranović H, Chauve C, Salse J, Tannier E., Bioinformatics 27(13), 2011
PMID: 21685079
Consistency of sequence-based gene clusters.
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PMID: 21899413
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PMID: 21899413
Consistency-based detection of potential tumor-specific deletions in matched normal/tumor genomes.
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PMID: 22152084
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PMID: 22152084
Minimal conflicting sets for the consecutive ones property in ancestral genome reconstruction.
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PMID: 20874402
Chauve C, Hausd UU, Stephen T, You VP., J Comput Biol 17(9), 2010
PMID: 20874402
26 References
Daten bereitgestellt von Europe PubMed Central.
Identifying conserved gene clusters in the presence of homology families.
He X, Goldwasser MH., J. Comput. Biol. 12(6), 2005
PMID: 16108708
He X, Goldwasser MH., J. Comput. Biol. 12(6), 2005
PMID: 16108708
AUTHOR UNKNOWN, 0
Gene context conservation of a higher order than operons.
Lathe WC 3rd, Snel B, Bork P., Trends Biochem. Sci. 25(10), 2000
PMID: 11050428
Lathe WC 3rd, Snel B, Bork P., Trends Biochem. Sci. 25(10), 2000
PMID: 11050428
Evolution of gene order conservation in prokaryotes.
Tamames J., Genome Biol. 2(6), 2001
PMID: 11423009
Tamames J., Genome Biol. 2(6), 2001
PMID: 11423009
Selfish Operons: Horizontal Transfer May Drive the Evolution of Gene Clusters
lawrence, Genetics (), 1996
lawrence, Genetics (), 1996
The Incompatible Desiderata of Gene Cluster Properties
hoberman, Proc Third Research in Computational Molecular Biology (RECOMB) Satellite Workshop Comparative Genomics (RECOMB-CG '05) (), 2005
hoberman, Proc Third Research in Computational Molecular Biology (RECOMB) Satellite Workshop Comparative Genomics (RECOMB-CG '05) (), 2005
bergeron, Bioinformatics Algorithms Techniques and Applications (), 2007
AUTHOR UNKNOWN, 0
AUTHOR UNKNOWN, 0
parida, Pattern Discovery in Bioinformatics Theory and Algorithms (), 2007
AUTHOR UNKNOWN, 0
Conservation of gene order: a fingerprint of proteins that physically interact.
Dandekar T, Snel B, Huynen M, Bork P., Trends Biochem. Sci. 23(9), 1998
PMID: 9787636
Dandekar T, Snel B, Huynen M, Bork P., Trends Biochem. Sci. 23(9), 1998
PMID: 9787636
The use of gene clusters to infer functional coupling.
Overbeek R, Fonstein M, D'Souza M, Pusch GD, Maltsev N., Proc. Natl. Acad. Sci. U.S.A. 96(6), 1999
PMID: 10077608
Overbeek R, Fonstein M, D'Souza M, Pusch GD, Maltsev N., Proc. Natl. Acad. Sci. U.S.A. 96(6), 1999
PMID: 10077608
Database resources of the National Center for Biotechnology Information.
Wheeler DL, Chappey C, Lash AE, Leipe DD, Madden TL, Schuler GD, Tatusova TA, Rapp BA., Nucleic Acids Res. 28(1), 2000
PMID: 10592169
Wheeler DL, Chappey C, Lash AE, Leipe DD, Madden TL, Schuler GD, Tatusova TA, Rapp BA., Nucleic Acids Res. 28(1), 2000
PMID: 10592169
Common intervals and symmetric difference in a model-free phylogenomics, with an application to streptophyte evolution.
Adam Z, Turmel M, Lemieux C, Sankoff D., J. Comput. Biol. 14(4), 2007
PMID: 17572022
Adam Z, Turmel M, Lemieux C, Sankoff D., J. Comput. Biol. 14(4), 2007
PMID: 17572022
A genomic perspective on protein families.
Tatusov RL, Koonin EV, Lipman DJ., Science 278(5338), 1997
PMID: 9381173
Tatusov RL, Koonin EV, Lipman DJ., Science 278(5338), 1997
PMID: 9381173
AUTHOR UNKNOWN, 0
The COG database: an updated version includes eukaryotes.
Tatusov RL, Fedorova ND, Jackson JD, Jacobs AR, Kiryutin B, Koonin EV, Krylov DM, Mazumder R, Mekhedov SL, Nikolskaya AN, Rao BS, Smirnov S, Sverdlov AV, Vasudevan S, Wolf YI, Yin JJ, Natale DA., BMC Bioinformatics 4(), 2003
PMID: 12969510
Tatusov RL, Fedorova ND, Jackson JD, Jacobs AR, Kiryutin B, Koonin EV, Krylov DM, Mazumder R, Mekhedov SL, Nikolskaya AN, Rao BS, Smirnov S, Sverdlov AV, Vasudevan S, Wolf YI, Yin JJ, Natale DA., BMC Bioinformatics 4(), 2003
PMID: 12969510
On the similarity of sets of permutations and its applications to genome comparison.
Bergeron A, Stoye J., J. Comput. Biol. 13(7), 2006
PMID: 17037962
Bergeron A, Stoye J., J. Comput. Biol. 13(7), 2006
PMID: 17037962
AUTHOR UNKNOWN, 0
Organization of a large gene cluster encoding ribosomal proteins in the cyanobacterium Synechococcus sp. strain PCC 6301: comparison of gene clusters among cyanobacteria, eubacteria and chloroplast genomes.
Sugita M, Sugishita H, Fujishiro T, Tsuboi M, Sugita C, Endo T, Sugiura M., Gene 195(1), 1997
PMID: 9300823
Sugita M, Sugishita H, Fujishiro T, Tsuboi M, Sugita C, Endo T, Sugiura M., Gene 195(1), 1997
PMID: 9300823
AUTHOR UNKNOWN, 0
hsu, Handbook of Data Structures and Applications (), 2003
Gene proximity analysis across whole genomes via PQ trees.
Landau GM, Parida L, Weimann O., J. Comput. Biol. 12(10), 2005
PMID: 16379535
Landau GM, Parida L, Weimann O., J. Comput. Biol. 12(10), 2005
PMID: 16379535
AUTHOR UNKNOWN, 0
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