Phylogenetic Comparative Assembly
Husemann P, Stoye J (2009)
In: Proc. of WABI 2009. LNBI, 5724. 145-156.
Konferenzbeitrag
| Veröffentlicht | Englisch
Download
Es wurden keine Dateien hochgeladen. Nur Publikationsnachweis!
Autor*in
Einrichtung
Erscheinungsjahr
2009
Titel des Konferenzbandes
Proc. of WABI 2009
Serien- oder Zeitschriftentitel
LNBI
Band
5724
Seite(n)
145-156
Konferenz
WABI 2009
Konferenzort
Philadelphia, USA
Konferenzdatum
2009-09-12
Page URI
https://pub.uni-bielefeld.de/record/1893884
Zitieren
Husemann P, Stoye J. Phylogenetic Comparative Assembly. In: Proc. of WABI 2009. LNBI. Vol 5724. 2009: 145-156.
Husemann, P., & Stoye, J. (2009). Phylogenetic Comparative Assembly. Proc. of WABI 2009, LNBI, 5724, 145-156. https://doi.org/10.1007/978-3-642-04241-6_13
Husemann, Peter, and Stoye, Jens. 2009. “Phylogenetic Comparative Assembly”. In Proc. of WABI 2009, 5724:145-156. LNBI.
Husemann, P., and Stoye, J. (2009). “Phylogenetic Comparative Assembly” in Proc. of WABI 2009 LNBI, vol. 5724, 145-156.
Husemann, P., & Stoye, J., 2009. Phylogenetic Comparative Assembly. In Proc. of WABI 2009. LNBI. no.5724 pp. 145-156.
P. Husemann and J. Stoye, “Phylogenetic Comparative Assembly”, Proc. of WABI 2009, LNBI, vol. 5724, 2009, pp.145-156.
Husemann, P., Stoye, J.: Phylogenetic Comparative Assembly. Proc. of WABI 2009. LNBI. 5724, p. 145-156. (2009).
Husemann, Peter, and Stoye, Jens. “Phylogenetic Comparative Assembly”. Proc. of WABI 2009. 2009.Vol. 5724. LNBI. 145-156.
7 Zitationen in Europe PMC
Daten bereitgestellt von Europe PubMed Central.
Phylogenetic signal from rearrangements in 18 Anopheles species by joint scaffolding extant and ancestral genomes.
Anselmetti Y, Duchemin W, Tannier E, Chauve C, Bérard S., BMC Genomics 19(suppl 2), 2018
PMID: 29764366
Anselmetti Y, Duchemin W, Tannier E, Chauve C, Bérard S., BMC Genomics 19(suppl 2), 2018
PMID: 29764366
The inference of gene trees with species trees.
Szöllősi GJ, Tannier E, Daubin V, Boussau B., Syst Biol 64(1), 2015
PMID: 25070970
Szöllősi GJ, Tannier E, Daubin V, Boussau B., Syst Biol 64(1), 2015
PMID: 25070970
MeDuSa: a multi-draft based scaffolder.
Bosi E, Donati B, Galardini M, Brunetti S, Sagot MF, Lió P, Crescenzi P, Fani R, Fondi M., Bioinformatics 31(15), 2015
PMID: 25810435
Bosi E, Donati B, Galardini M, Brunetti S, Sagot MF, Lió P, Crescenzi P, Fani R, Fondi M., Bioinformatics 31(15), 2015
PMID: 25810435
Ancestral gene synteny reconstruction improves extant species scaffolding.
Anselmetti Y, Berry V, Chauve C, Chateau A, Tannier E, Bérard S., BMC Genomics 16 Suppl 10(), 2015
PMID: 26450761
Anselmetti Y, Berry V, Chauve C, Chateau A, Tannier E, Bérard S., BMC Genomics 16 Suppl 10(), 2015
PMID: 26450761
FPSAC: fast phylogenetic scaffolding of ancient contigs.
Rajaraman A, Tannier E, Chauve C., Bioinformatics 29(23), 2013
PMID: 24068034
Rajaraman A, Tannier E, Chauve C., Bioinformatics 29(23), 2013
PMID: 24068034
Comparative genomics approach to detecting split-coding regions in a low-coverage genome: lessons from the chimaera Callorhinchus milii (Holocephali, Chondrichthyes).
Dessimoz C, Zoller S, Manousaki T, Qiu H, Meyer A, Kuraku S., Brief Bioinform 12(5), 2011
PMID: 21712341
Dessimoz C, Zoller S, Manousaki T, Qiu H, Meyer A, Kuraku S., Brief Bioinform 12(5), 2011
PMID: 21712341
r2cat: synteny plots and comparative assembly.
Husemann P, Stoye J., Bioinformatics 26(4), 2010
PMID: 20015948
Husemann P, Stoye J., Bioinformatics 26(4), 2010
PMID: 20015948
23 References
Daten bereitgestellt von Europe PubMed Central.
A strategy of DNA sequencing employing computer programs.
Staden R., Nucleic Acids Res. 6(7), 1979
PMID: 461197
Staden R., Nucleic Acids Res. 6(7), 1979
PMID: 461197
Shotgun DNA sequencing using cloned DNase I-generated fragments.
Anderson S., Nucleic Acids Res. 9(13), 1981
PMID: 6269069
Anderson S., Nucleic Acids Res. 9(13), 1981
PMID: 6269069
The impact of next-generation sequencing technology on genetics.
Mardis ER., Trends Genet. 24(3), 2008
PMID: 18262675
Mardis ER., Trends Genet. 24(3), 2008
PMID: 18262675
Bioinformatics challenges of new sequencing technology.
Pop M, Salzberg SL., Trends Genet. 24(3), 2008
PMID: 18262676
Pop M, Salzberg SL., Trends Genet. 24(3), 2008
PMID: 18262676
DNA sequencing with chain-terminating inhibitors.
Sanger F, Nicklen S, Coulson AR., Proc. Natl. Acad. Sci. U.S.A. 74(12), 1977
PMID: 271968
Sanger F, Nicklen S, Coulson AR., Proc. Natl. Acad. Sci. U.S.A. 74(12), 1977
PMID: 271968
Projector 2: contig mapping for efficient gap-closure of prokaryotic genome sequence assemblies.
van Hijum SA, Zomer AL, Kuipers OP, Kok J., Nucleic Acids Res. 33(Web Server issue), 2005
PMID: 15980536
van Hijum SA, Zomer AL, Kuipers OP, Kok J., Nucleic Acids Res. 33(Web Server issue), 2005
PMID: 15980536
Basic local alignment search tool.
Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ., J. Mol. Biol. 215(3), 1990
PMID: 2231712
Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ., J. Mol. Biol. 215(3), 1990
PMID: 2231712
OSLay: optimal syntenic layout of unfinished assemblies.
Richter DC, Schuster SC, Huson DH., Bioinformatics 23(13), 2007
PMID: 17463020
Richter DC, Schuster SC, Huson DH., Bioinformatics 23(13), 2007
PMID: 17463020
Consed: a graphical tool for sequence finishing.
Gordon D, Abajian C, Green P., Genome Res. 8(3), 1998
PMID: 9521923
Gordon D, Abajian C, Green P., Genome Res. 8(3), 1998
PMID: 9521923
A new pheromone trail-based genetic algorithm for comparative genome assembly.
Zhao F, Zhao F, Li T, Bryant DA., Nucleic Acids Res. 36(10), 2008
PMID: 18445633
Zhao F, Zhao F, Li T, Bryant DA., Nucleic Acids Res. 36(10), 2008
PMID: 18445633
Efficient q-gram filters for finding all epsilon-matches over a given length.
Rasmussen KR, Stoye J, Myers EW., J. Comput. Biol. 13(2), 2006
PMID: 16597241
Rasmussen KR, Stoye J, Myers EW., J. Comput. Biol. 13(2), 2006
PMID: 16597241
Fast Algorithms for Geometric Traveling Salesman Problems
AUTHOR UNKNOWN, 1992
AUTHOR UNKNOWN, 1992
The lifestyle of Corynebacterium urealyticum derived from its complete genome sequence established by pyrosequencing.
Tauch A, Trost E, Tilker A, Ludewig U, Schneiker S, Goesmann A, Arnold W, Bekel T, Brinkrolf K, Brune I, Gotker S, Kalinowski J, Kamp PB, Lobo FP, Viehoever P, Weisshaar B, Soriano F, Droge M, Puhler A., J. Biotechnol. 136(1-2), 2008
PMID: 18367281
Tauch A, Trost E, Tilker A, Ludewig U, Schneiker S, Goesmann A, Arnold W, Bekel T, Brinkrolf K, Brune I, Gotker S, Kalinowski J, Kamp PB, Lobo FP, Viehoever P, Weisshaar B, Soriano F, Droge M, Puhler A., J. Biotechnol. 136(1-2), 2008
PMID: 18367281
Ultrafast pyrosequencing of Corynebacterium kroppenstedtii DSM44385 revealed insights into the physiology of a lipophilic corynebacterium that lacks mycolic acids.
Tauch A, Schneider J, Szczepanowski R, Tilker A, Viehoever P, Gartemann KH, Arnold W, Blom J, Brinkrolf K, Brune I, Gotker S, Weisshaar B, Goesmann A, Droge M, Puhler A., J. Biotechnol. 136(1-2), 2008
PMID: 18430482
Tauch A, Schneider J, Szczepanowski R, Tilker A, Viehoever P, Gartemann KH, Arnold W, Blom J, Brinkrolf K, Brune I, Gotker S, Weisshaar B, Goesmann A, Droge M, Puhler A., J. Biotechnol. 136(1-2), 2008
PMID: 18430482
Database resources of the National Center for Biotechnology Information.
Wheeler DL, Chappey C, Lash AE, Leipe DD, Madden TL, Schuler GD, Tatusova TA, Rapp BA., Nucleic Acids Res. 28(1), 2000
PMID: 10592169
Wheeler DL, Chappey C, Lash AE, Leipe DD, Madden TL, Schuler GD, Tatusova TA, Rapp BA., Nucleic Acids Res. 28(1), 2000
PMID: 10592169
EDGAR: a software framework for the comparative analysis of prokaryotic genomes.
Blom J, Albaum SP, Doppmeier D, Puhler A, Vorholter FJ, Zakrzewski M, Goesmann A., BMC Bioinformatics 10(), 2009
PMID: 19457249
Blom J, Albaum SP, Doppmeier D, Puhler A, Vorholter FJ, Zakrzewski M, Goesmann A., BMC Bioinformatics 10(), 2009
PMID: 19457249
The neighbor-joining method: a new method for reconstructing phylogenetic trees.
Saitou N, Nei M., Mol. Biol. Evol. 4(4), 1987
PMID: 3447015
Saitou N, Nei M., Mol. Biol. Evol. 4(4), 1987
PMID: 3447015
Versatile and open software for comparing large genomes.
Kurtz S, Phillippy A, Delcher AL, Smoot M, Shumway M, Antonescu C, Salzberg SL., Genome Biol. 5(2), 2004
PMID: 14759262
Kurtz S, Phillippy A, Delcher AL, Smoot M, Shumway M, Antonescu C, Salzberg SL., Genome Biol. 5(2), 2004
PMID: 14759262
Improved tools for biological sequence comparison.
Pearson WR, Lipman DJ., Proc. Natl. Acad. Sci. U.S.A. 85(8), 1988
PMID: 3162770
Pearson WR, Lipman DJ., Proc. Natl. Acad. Sci. U.S.A. 85(8), 1988
PMID: 3162770
An Open Graph Visualization System and Its Applications to Software Engineering
AUTHOR UNKNOWN, 1999
AUTHOR UNKNOWN, 1999
PHY.FI: fast and easy online creation and manipulation of phylogeny color figures.
Fredslund J., BMC Bioinformatics 7(), 2006
PMID: 16792795
Fredslund J., BMC Bioinformatics 7(), 2006
PMID: 16792795
Export
Markieren/ Markierung löschen
Markierte Publikationen
Web of Science
Dieser Datensatz im Web of Science®Quellen
PMID: 20047659
PubMed | Europe PMC
Suchen in
Google Scholar