Whole-genome sequence of the bovine blood fluke Schistosoma bovis supports interspecific hybridization with S. haematobium
Oey H, Zakrzewski M, Gravermann K, Young ND, Korhonen PK, Gobert GN, Nawaratna S, Hasan S, Martínez DM, You H, Lavin M, et al. (2019)
PLOS Pathogens 15(1): e1007513.
Zeitschriftenaufsatz
| Veröffentlicht | Englisch
Download
Es wurden keine Dateien hochgeladen. Nur Publikationsnachweis!
Autor*in
Oey, Harald;
Zakrzewski, Martha;
Gravermann, Kerstin;
Young, Neil D.;
Korhonen, Pasi K.;
Gobert, Geoffrey N.;
Nawaratna, Sujeevi;
Hasan, Shibab;
Martínez, David M.;
You, Hong;
Lavin, Martin;
Jones, Malcolm
Alle
Alle
Einrichtung
Erscheinungsjahr
2019
Zeitschriftentitel
PLOS Pathogens
Band
15
Ausgabe
1
Art.-Nr.
e1007513
ISSN
1553-7366
Page URI
https://pub.uni-bielefeld.de/record/2932884
Zitieren
Oey H, Zakrzewski M, Gravermann K, et al. Whole-genome sequence of the bovine blood fluke Schistosoma bovis supports interspecific hybridization with S. haematobium. PLOS Pathogens. 2019;15(1): e1007513.
Oey, H., Zakrzewski, M., Gravermann, K., Young, N. D., Korhonen, P. K., Gobert, G. N., Nawaratna, S., et al. (2019). Whole-genome sequence of the bovine blood fluke Schistosoma bovis supports interspecific hybridization with S. haematobium. PLOS Pathogens, 15(1), e1007513. doi:10.1371/journal.ppat.1007513
Oey, Harald, Zakrzewski, Martha, Gravermann, Kerstin, Young, Neil D., Korhonen, Pasi K., Gobert, Geoffrey N., Nawaratna, Sujeevi, et al. 2019. “Whole-genome sequence of the bovine blood fluke Schistosoma bovis supports interspecific hybridization with S. haematobium”. PLOS Pathogens 15 (1): e1007513.
Oey, H., Zakrzewski, M., Gravermann, K., Young, N. D., Korhonen, P. K., Gobert, G. N., Nawaratna, S., Hasan, S., Martínez, D. M., You, H., et al. (2019). Whole-genome sequence of the bovine blood fluke Schistosoma bovis supports interspecific hybridization with S. haematobium. PLOS Pathogens 15:e1007513.
Oey, H., et al., 2019. Whole-genome sequence of the bovine blood fluke Schistosoma bovis supports interspecific hybridization with S. haematobium. PLOS Pathogens, 15(1): e1007513.
H. Oey, et al., “Whole-genome sequence of the bovine blood fluke Schistosoma bovis supports interspecific hybridization with S. haematobium”, PLOS Pathogens, vol. 15, 2019, : e1007513.
Oey, H., Zakrzewski, M., Gravermann, K., Young, N.D., Korhonen, P.K., Gobert, G.N., Nawaratna, S., Hasan, S., Martínez, D.M., You, H., Lavin, M., Jones, M., Ragan, M.A., Stoye, J., Oleaga, A., Emery, A.M., Webster, B., Rollinson, D., Gasser, R.B., McManus, D.P., Krause, L.: Whole-genome sequence of the bovine blood fluke Schistosoma bovis supports interspecific hybridization with S. haematobium. PLOS Pathogens. 15, : e1007513 (2019).
Oey, Harald, Zakrzewski, Martha, Gravermann, Kerstin, Young, Neil D., Korhonen, Pasi K., Gobert, Geoffrey N., Nawaratna, Sujeevi, Hasan, Shibab, Martínez, David M., You, Hong, Lavin, Martin, Jones, Malcolm, Ragan, Mark A., Stoye, Jens, Oleaga, Ana, Emery, Aidan M., Webster, Bonnie, Rollinson, David, Gasser, Robin B., McManus, Donald P., and Krause, Lutz. “Whole-genome sequence of the bovine blood fluke Schistosoma bovis supports interspecific hybridization with S. haematobium”. PLOS Pathogens 15.1 (2019): e1007513.
1 Zitation in Europe PMC
Daten bereitgestellt von Europe PubMed Central.
Long-read sequencing reveals a 4.4 kb tandem repeat region in the mitogenome of Echinococcus granulosus (sensu stricto) genotype G1.
Kinkar L, Korhonen PK, Cai H, Gauci CG, Lightowlers MW, Saarma U, Jenkins DJ, Li J, Li J, Young ND, Gasser RB., Parasit Vectors 12(1), 2019
PMID: 31097022
Kinkar L, Korhonen PK, Cai H, Gauci CG, Lightowlers MW, Saarma U, Jenkins DJ, Li J, Li J, Young ND, Gasser RB., Parasit Vectors 12(1), 2019
PMID: 31097022
66 References
Daten bereitgestellt von Europe PubMed Central.
Schistosomiasis.
McManus DP, Dunne DW, Sacko M, Utzinger J, Vennervald BJ, Zhou XN., Nat Rev Dis Primers 4(1), 2018
PMID: 30093684
McManus DP, Dunne DW, Sacko M, Utzinger J, Vennervald BJ, Zhou XN., Nat Rev Dis Primers 4(1), 2018
PMID: 30093684
Chasing helminths and their economic impact on farmed ruminants.
Charlier J, van der Voort M, Kenyon F, Skuce P, Vercruysse J., Trends Parasitol. 30(7), 2014
PMID: 24888669
Charlier J, van der Voort M, Kenyon F, Skuce P, Vercruysse J., Trends Parasitol. 30(7), 2014
PMID: 24888669
Introgressive hybridization of Schistosoma haematobium group species in Senegal: species barrier break down between ruminant and human schistosomes.
Webster BL, Diaw OT, Seye MM, Webster JP, Rollinson D., PLoS Negl Trop Dis 7(4), 2013
PMID: 23593513
Webster BL, Diaw OT, Seye MM, Webster JP, Rollinson D., PLoS Negl Trop Dis 7(4), 2013
PMID: 23593513
Outbreak of urogenital schistosomiasis in Corsica (France): an epidemiological case study.
Boissier J, Grech-Angelini S, Webster BL, Allienne JF, Huyse T, Mas-Coma S, Toulza E, Barre-Cardi H, Rollinson D, Kincaid-Smith J, Oleaga A, Galinier R, Foata J, Rognon A, Berry A, Mouahid G, Henneron R, Mone H, Noel H, Mitta G., Lancet Infect Dis 16(8), 2016
PMID: 27197551
Boissier J, Grech-Angelini S, Webster BL, Allienne JF, Huyse T, Mas-Coma S, Toulza E, Barre-Cardi H, Rollinson D, Kincaid-Smith J, Oleaga A, Galinier R, Foata J, Rognon A, Berry A, Mouahid G, Henneron R, Mone H, Noel H, Mitta G., Lancet Infect Dis 16(8), 2016
PMID: 27197551
A wake up call for urinary schistosomiasis: reconciling research effort with public health importance.
Rollinson D., Parasitology 136(12), 2009
PMID: 19627633
Rollinson D., Parasitology 136(12), 2009
PMID: 19627633
A review of human carcinogens--Part B: biological agents.
Bouvard V, Baan R, Straif K, Grosse Y, Secretan B, El Ghissassi F, Benbrahim-Tallaa L, Guha N, Freeman C, Galichet L, Cogliano V; WHO International Agency for Research on Cancer Monograph Working Group, Schulz TF, Mueller N, Grulich A, Sitas F, Polman K, Chen CJ, Fang YY, Herrero R, Vennervald BJ, Mahieux R, Megraud F, Zoulim F, Blum H, zur Hausen H, Banks L, Carbone A, Serraino D, Matsuoka M, Hong ST, Kew MC, de Sanjose S, Ernberg I, Sripa B, Hall A, Forman D, Newton R, Cesarman E, Dittmer D, Fontham ET, Lambert PF, Moss S, Murphy E, Schiffman M, Stuver S, Whitby D, Munoz N., Lancet Oncol. 10(4), 2009
PMID: 19350698
Bouvard V, Baan R, Straif K, Grosse Y, Secretan B, El Ghissassi F, Benbrahim-Tallaa L, Guha N, Freeman C, Galichet L, Cogliano V; WHO International Agency for Research on Cancer Monograph Working Group, Schulz TF, Mueller N, Grulich A, Sitas F, Polman K, Chen CJ, Fang YY, Herrero R, Vennervald BJ, Mahieux R, Megraud F, Zoulim F, Blum H, zur Hausen H, Banks L, Carbone A, Serraino D, Matsuoka M, Hong ST, Kew MC, de Sanjose S, Ernberg I, Sripa B, Hall A, Forman D, Newton R, Cesarman E, Dittmer D, Fontham ET, Lambert PF, Moss S, Murphy E, Schiffman M, Stuver S, Whitby D, Munoz N., Lancet Oncol. 10(4), 2009
PMID: 19350698
Association between genital schistosomiasis and HIV in rural Zimbabwean women.
Kjetland EF, Ndhlovu PD, Gomo E, Mduluza T, Midzi N, Gwanzura L, Mason PR, Sandvik L, Friis H, Gundersen SG., AIDS 20(4), 2006
PMID: 16470124
Kjetland EF, Ndhlovu PD, Gomo E, Mduluza T, Midzi N, Gwanzura L, Mason PR, Sandvik L, Friis H, Gundersen SG., AIDS 20(4), 2006
PMID: 16470124
Hybrids between Schistosoma haematobium and S. mattheei and their identification by isoelectric focusing of enzymes.
Wright CA, Ross GC., Trans. R. Soc. Trop. Med. Hyg. 74(3), 1980
PMID: 7434427
Wright CA, Ross GC., Trans. R. Soc. Trop. Med. Hyg. 74(3), 1980
PMID: 7434427
Schistosomiasis collection at NHM (SCAN).
Emery AM, Allan FE, Rabone ME, Rollinson D., Parasit Vectors 5(), 2012
PMID: 22943137
Emery AM, Allan FE, Rabone ME, Rollinson D., Parasit Vectors 5(), 2012
PMID: 22943137
Exploring genome characteristics and sequence quality without a reference.
Simpson JT., Bioinformatics 30(9), 2014
PMID: 24443382
Simpson JT., Bioinformatics 30(9), 2014
PMID: 24443382
GenomeScope: fast reference-free genome profiling from short reads.
Vurture GW, Sedlazeck FJ, Nattestad M, Underwood CJ, Fang H, Gurtowski J, Schatz MC., Bioinformatics 33(14), 2017
PMID: 28369201
Vurture GW, Sedlazeck FJ, Nattestad M, Underwood CJ, Fang H, Gurtowski J, Schatz MC., Bioinformatics 33(14), 2017
PMID: 28369201
A systematically improved high quality genome and transcriptome of the human blood fluke Schistosoma mansoni.
Protasio AV, Tsai IJ, Babbage A, Nichol S, Hunt M, Aslett MA, De Silva N, Velarde GS, Anderson TJ, Clark RC, Davidson C, Dillon GP, Holroyd NE, LoVerde PT, Lloyd C, McQuillan J, Oliveira G, Otto TD, Parker-Manuel SJ, Quail MA, Wilson RA, Zerlotini A, Dunne DW, Berriman M., PLoS Negl Trop Dis 6(1), 2012
PMID: 22253936
Protasio AV, Tsai IJ, Babbage A, Nichol S, Hunt M, Aslett MA, De Silva N, Velarde GS, Anderson TJ, Clark RC, Davidson C, Dillon GP, Holroyd NE, LoVerde PT, Lloyd C, McQuillan J, Oliveira G, Otto TD, Parker-Manuel SJ, Quail MA, Wilson RA, Zerlotini A, Dunne DW, Berriman M., PLoS Negl Trop Dis 6(1), 2012
PMID: 22253936
The genome of the blood fluke Schistosoma mansoni.
Berriman M, Haas BJ, LoVerde PT, Wilson RA, Dillon GP, Cerqueira GC, Mashiyama ST, Al-Lazikani B, Andrade LF, Ashton PD, Aslett MA, Bartholomeu DC, Blandin G, Caffrey CR, Coghlan A, Coulson R, Day TA, Delcher A, DeMarco R, Djikeng A, Eyre T, Gamble JA, Ghedin E, Gu Y, Hertz-Fowler C, Hirai H, Hirai Y, Houston R, Ivens A, Johnston DA, Lacerda D, Macedo CD, McVeigh P, Ning Z, Oliveira G, Overington JP, Parkhill J, Pertea M, Pierce RJ, Protasio AV, Quail MA, Rajandream MA, Rogers J, Sajid M, Salzberg SL, Stanke M, Tivey AR, White O, Williams DL, Wortman J, Wu W, Zamanian M, Zerlotini A, Fraser-Liggett CM, Barrell BG, El-Sayed NM., Nature 460(7253), 2009
PMID: 19606141
Berriman M, Haas BJ, LoVerde PT, Wilson RA, Dillon GP, Cerqueira GC, Mashiyama ST, Al-Lazikani B, Andrade LF, Ashton PD, Aslett MA, Bartholomeu DC, Blandin G, Caffrey CR, Coghlan A, Coulson R, Day TA, Delcher A, DeMarco R, Djikeng A, Eyre T, Gamble JA, Ghedin E, Gu Y, Hertz-Fowler C, Hirai H, Hirai Y, Houston R, Ivens A, Johnston DA, Lacerda D, Macedo CD, McVeigh P, Ning Z, Oliveira G, Overington JP, Parkhill J, Pertea M, Pierce RJ, Protasio AV, Quail MA, Rajandream MA, Rogers J, Sajid M, Salzberg SL, Stanke M, Tivey AR, White O, Williams DL, Wortman J, Wu W, Zamanian M, Zerlotini A, Fraser-Liggett CM, Barrell BG, El-Sayed NM., Nature 460(7253), 2009
PMID: 19606141
Whole-genome sequence of Schistosoma haematobium.
Young ND, Jex AR, Li B, Liu S, Yang L, Xiong Z, Li Y, Cantacessi C, Hall RS, Xu X, Chen F, Wu X, Zerlotini A, Oliveira G, Hofmann A, Zhang G, Fang X, Kang Y, Campbell BE, Loukas A, Ranganathan S, Rollinson D, Rinaldi G, Brindley PJ, Yang H, Wang J, Wang J, Gasser RB., Nat. Genet. 44(2), 2012
PMID: 22246508
Young ND, Jex AR, Li B, Liu S, Yang L, Xiong Z, Li Y, Cantacessi C, Hall RS, Xu X, Chen F, Wu X, Zerlotini A, Oliveira G, Hofmann A, Zhang G, Fang X, Kang Y, Campbell BE, Loukas A, Ranganathan S, Rollinson D, Rinaldi G, Brindley PJ, Yang H, Wang J, Wang J, Gasser RB., Nat. Genet. 44(2), 2012
PMID: 22246508
The Schistosoma japonicum genome reveals features of host-parasite interplay.
Schistosoma japonicum Genome Sequencing and Functional Analysis Consortium, Zhou Y, Zheng H, Chen Y, Zhang L, Wang K, Guo J, Huang Z, Zhang B, Huang W, Jin K, Dou T, Hasegawa M, Wang L, Zhang Y, Zhou J, Tao L, Cao Z, Li Y, Vinar T, Brejova B, Brown D, Li M, Miller DJ, Blair D, Zhong Y, Chen Z, Liu F, Hu W, Wang ZQ, Zhang QH, Song HD, Chen S, Xu X, Xu B, Ju C, Huang Y, Brindley PJ, McManus DP, Feng Z, Han ZG, Lu G, Ren S, Wang Y, Gu W, Kang H, Chen J, Chen X, Chen S, Wang L, Yan J, Wang B, Lv X, Jin L, Wang B, Pu S, Zhang X, Zhang W, Hu Q, Zhu G, Wang J, Yu J, Wang J, Yang H, Ning Z, Beriman M, Wei CL, Ruan Y, Zhao G, Wang S, Liu F, Zhou Y, Wang ZQ, Lu G, Zheng H, Brindley PJ, McManus DP, Blair D, Zhang QH, Zhong Y, Wang S, Han ZG, Chen Z, Wang S, Han ZG, Chen Z., Nature 460(7253), 2009
PMID: 19606140
Schistosoma japonicum Genome Sequencing and Functional Analysis Consortium, Zhou Y, Zheng H, Chen Y, Zhang L, Wang K, Guo J, Huang Z, Zhang B, Huang W, Jin K, Dou T, Hasegawa M, Wang L, Zhang Y, Zhou J, Tao L, Cao Z, Li Y, Vinar T, Brejova B, Brown D, Li M, Miller DJ, Blair D, Zhong Y, Chen Z, Liu F, Hu W, Wang ZQ, Zhang QH, Song HD, Chen S, Xu X, Xu B, Ju C, Huang Y, Brindley PJ, McManus DP, Feng Z, Han ZG, Lu G, Ren S, Wang Y, Gu W, Kang H, Chen J, Chen X, Chen S, Wang L, Yan J, Wang B, Lv X, Jin L, Wang B, Pu S, Zhang X, Zhang W, Hu Q, Zhu G, Wang J, Yu J, Wang J, Yang H, Ning Z, Beriman M, Wei CL, Ruan Y, Zhao G, Wang S, Liu F, Zhou Y, Wang ZQ, Lu G, Zheng H, Brindley PJ, McManus DP, Blair D, Zhang QH, Zhong Y, Wang S, Han ZG, Chen Z, Wang S, Han ZG, Chen Z., Nature 460(7253), 2009
PMID: 19606140
A revision of the interrelationships of Schistosoma including the recently described Schistosoma guineensis.
Webster BL, Southgate VR, Littlewood DT., Int. J. Parasitol. 36(8), 2006
PMID: 16730013
Webster BL, Southgate VR, Littlewood DT., Int. J. Parasitol. 36(8), 2006
PMID: 16730013
Integrated genome analysis suggests that most conserved non-coding sequences are regulatory factor binding sites.
Hemberg M, Gray JM, Cloonan N, Kuersten S, Grimmond S, Greenberg ME, Kreiman G., Nucleic Acids Res. 40(16), 2012
PMID: 22684627
Hemberg M, Gray JM, Cloonan N, Kuersten S, Grimmond S, Greenberg ME, Kreiman G., Nucleic Acids Res. 40(16), 2012
PMID: 22684627
Ultraconserved elements in the human genome.
Bejerano G, Pheasant M, Makunin I, Stephen S, Kent WJ, Mattick JS, Haussler D., Science 304(5675), 2004
PMID: 15131266
Bejerano G, Pheasant M, Makunin I, Stephen S, Kent WJ, Mattick JS, Haussler D., Science 304(5675), 2004
PMID: 15131266
Arrays of ultraconserved non-coding regions span the loci of key developmental genes in vertebrate genomes.
Sandelin A, Bailey P, Bruce S, Engstrom PG, Klos JM, Wasserman WW, Ericson J, Lenhard B., BMC Genomics 5(1), 2004
PMID: 15613238
Sandelin A, Bailey P, Bruce S, Engstrom PG, Klos JM, Wasserman WW, Ericson J, Lenhard B., BMC Genomics 5(1), 2004
PMID: 15613238
Recently integrated Alu retrotransposons are essentially neutral residents of the human genome.
Cordaux R, Lee J, Dinoso L, Batzer MA., Gene 373(), 2006
PMID: 16527433
Cordaux R, Lee J, Dinoso L, Batzer MA., Gene 373(), 2006
PMID: 16527433
Whole genome amplification and exome sequencing of archived schistosome miracidia.
Le Clec'h W, Chevalier FD, McDew-White M, Allan F, Webster BL, Gouvras AN, Kinunghi S, Tchuem Tchuente LA, Garba A, Mohammed KA, Ame SM, Webster JP, Rollinson D, Emery AM, Anderson TJC., Parasitology 145(13), 2018
PMID: 29806576
Le Clec'h W, Chevalier FD, McDew-White M, Allan F, Webster BL, Gouvras AN, Kinunghi S, Tchuem Tchuente LA, Garba A, Mohammed KA, Ame SM, Webster JP, Rollinson D, Emery AM, Anderson TJC., Parasitology 145(13), 2018
PMID: 29806576
The Genome Analysis Toolkit: a MapReduce framework for analyzing next-generation DNA sequencing data.
McKenna A, Hanna M, Banks E, Sivachenko A, Cibulskis K, Kernytsky A, Garimella K, Altshuler D, Gabriel S, Daly M, DePristo MA., Genome Res. 20(9), 2010
PMID: 20644199
McKenna A, Hanna M, Banks E, Sivachenko A, Cibulskis K, Kernytsky A, Garimella K, Altshuler D, Gabriel S, Daly M, DePristo MA., Genome Res. 20(9), 2010
PMID: 20644199
Evolution of sex chromosomes ZW of Schistosoma mansoni inferred from chromosome paint and BAC mapping analyses.
Hirai H, Hirai Y, LoVerde PT., Parasitol. Int. 61(4), 2012
PMID: 22831897
Hirai H, Hirai Y, LoVerde PT., Parasitol. Int. 61(4), 2012
PMID: 22831897
AUTHOR UNKNOWN, 2017
Schistosomiasis vaccines: where do we stand?
Tebeje BM, Harvie M, You H, Loukas A, McManus DP., Parasit Vectors 9(1), 2016
PMID: 27716365
Tebeje BM, Harvie M, You H, Loukas A, McManus DP., Parasit Vectors 9(1), 2016
PMID: 27716365
Advancing a vaccine to prevent human schistosomiasis.
Merrifield M, Hotez PJ, Beaumier CM, Gillespie P, Strych U, Hayward T, Bottazzi ME., Vaccine 34(26), 2016
PMID: 27036511
Merrifield M, Hotez PJ, Beaumier CM, Gillespie P, Strych U, Hayward T, Bottazzi ME., Vaccine 34(26), 2016
PMID: 27036511
Constraining the Deep Origin of Parasitic Flatworms and Host-Interactions with Fossil Evidence.
De Baets K, Dentzien-Dias P, Upeniece I, Verneau O, Donoghue PC., Adv. Parasitol. 90(), 2015
PMID: 26597066
De Baets K, Dentzien-Dias P, Upeniece I, Verneau O, Donoghue PC., Adv. Parasitol. 90(), 2015
PMID: 26597066
Evolutionary relationships among the Schistosomatidae (Platyhelminthes:Digenea) and an Asian origin for Schistosoma.
Snyder SD, Loker ES., J. Parasitol. 86(2), 2000
PMID: 10780546
Snyder SD, Loker ES., J. Parasitol. 86(2), 2000
PMID: 10780546
Schistosoma mansoni and Biomphalaria: past history and future trends.
Morgan JA, Dejong RJ, Snyder SD, Mkoji GM, Loker ES., Parasitology 123 Suppl(), 2001
PMID: 11769285
Morgan JA, Dejong RJ, Snyder SD, Mkoji GM, Loker ES., Parasitology 123 Suppl(), 2001
PMID: 11769285
Evidence of intestinal parasites of dinosaurs.
Poinar G Jr, Boucot AJ., Parasitology 133(Pt 2), 2006
PMID: 16623965
Poinar G Jr, Boucot AJ., Parasitology 133(Pt 2), 2006
PMID: 16623965
Trace Fossil Evidence of Trematode-Bivalve Parasite-Host Interactions in Deep Time.
Huntley JW, De Baets K., Adv. Parasitol. 90(), 2015
PMID: 26597068
Huntley JW, De Baets K., Adv. Parasitol. 90(), 2015
PMID: 26597068
The complete mitochondrial genomes of Schistosoma haematobium and Schistosoma spindale and the evolutionary history of mitochondrial genome changes among parasitic flatworms.
Littlewood DT, Lockyer AE, Webster BL, Johnston DA, Le TH., Mol. Phylogenet. Evol. 39(2), 2006
PMID: 16464618
Littlewood DT, Lockyer AE, Webster BL, Johnston DA, Le TH., Mol. Phylogenet. Evol. 39(2), 2006
PMID: 16464618
Intracellular promiscuity in Schistosoma mansoni: nuclear transcribed DNA sequences are part of a mitochondrial minisatellite region.
Pena HB, de Souza CP, Simpson AJ, Pena SD., Proc. Natl. Acad. Sci. U.S.A. 92(3), 1995
PMID: 7846078
Pena HB, de Souza CP, Simpson AJ, Pena SD., Proc. Natl. Acad. Sci. U.S.A. 92(3), 1995
PMID: 7846078
Mitochondrial gene content, arrangement and composition compared in African and Asian schistosomes.
Le TH, Humair PF, Blair D, Agatsuma T, Littlewood DT, McManus DP., Mol. Biochem. Parasitol. 117(1), 2001
PMID: 11551632
Le TH, Humair PF, Blair D, Agatsuma T, Littlewood DT, McManus DP., Mol. Biochem. Parasitol. 117(1), 2001
PMID: 11551632
A fast, lock-free approach for efficient parallel counting of occurrences of k-mers.
Marcais G, Kingsford C., Bioinformatics 27(6), 2011
PMID: 21217122
Marcais G, Kingsford C., Bioinformatics 27(6), 2011
PMID: 21217122
AUTHOR UNKNOWN, 0
De novo assembly of human genomes with massively parallel short read sequencing.
Li R, Zhu H, Ruan J, Qian W, Fang X, Shi Z, Li Y, Li S, Shan G, Kristiansen K, Li S, Yang H, Wang J, Wang J., Genome Res. 20(2), 2009
PMID: 20019144
Li R, Zhu H, Ruan J, Qian W, Fang X, Shi Z, Li Y, Li S, Shan G, Kristiansen K, Li S, Yang H, Wang J, Wang J., Genome Res. 20(2), 2009
PMID: 20019144
CEGMA: a pipeline to accurately annotate core genes in eukaryotic genomes.
Parra G, Bradnam K, Korf I., Bioinformatics 23(9), 2007
PMID: 17332020
Parra G, Bradnam K, Korf I., Bioinformatics 23(9), 2007
PMID: 17332020
Using the miraEST assembler for reliable and automated mRNA transcript assembly and SNP detection in sequenced ESTs.
Chevreux B, Pfisterer T, Drescher B, Driesel AJ, Muller WE, Wetter T, Suhai S., Genome Res. 14(6), 2004
PMID: 15140833
Chevreux B, Pfisterer T, Drescher B, Driesel AJ, Muller WE, Wetter T, Suhai S., Genome Res. 14(6), 2004
PMID: 15140833
GAM-NGS: genomic assemblies merger for next generation sequencing.
Vicedomini R, Vezzi F, Scalabrin S, Arvestad L, Policriti A., BMC Bioinformatics 14 Suppl 7(), 2013
PMID: 23815503
Vicedomini R, Vezzi F, Scalabrin S, Arvestad L, Policriti A., BMC Bioinformatics 14 Suppl 7(), 2013
PMID: 23815503
Canu: scalable and accurate long-read assembly via adaptive k-mer weighting and repeat separation.
Koren S, Walenz BP, Berlin K, Miller JR, Bergman NH, Phillippy AM., Genome Res. 27(5), 2017
PMID: 28298431
Koren S, Walenz BP, Berlin K, Miller JR, Bergman NH, Phillippy AM., Genome Res. 27(5), 2017
PMID: 28298431
Fast gapped-read alignment with Bowtie 2.
Langmead B, Salzberg SL., Nat. Methods 9(4), 2012
PMID: 22388286
Langmead B, Salzberg SL., Nat. Methods 9(4), 2012
PMID: 22388286
AUTHOR UNKNOWN, 0
AUTHOR UNKNOWN, 0
MAKER: an easy-to-use annotation pipeline designed for emerging model organism genomes.
Cantarel BL, Korf I, Robb SM, Parra G, Ross E, Moore B, Holt C, Sanchez Alvarado A, Yandell M., Genome Res. 18(1), 2007
PMID: 18025269
Cantarel BL, Korf I, Robb SM, Parra G, Ross E, Moore B, Holt C, Sanchez Alvarado A, Yandell M., Genome Res. 18(1), 2007
PMID: 18025269
AUGUSTUS: a web server for gene finding in eukaryotes.
Stanke M, Steinkamp R, Waack S, Morgenstern B., Nucleic Acids Res. 32(Web Server issue), 2004
PMID: 15215400
Stanke M, Steinkamp R, Waack S, Morgenstern B., Nucleic Acids Res. 32(Web Server issue), 2004
PMID: 15215400
Gene identification in novel eukaryotic genomes by self-training algorithm.
Lomsadze A, Ter-Hovhannisyan V, Chernoff YO, Borodovsky M., Nucleic Acids Res. 33(20), 2005
PMID: 16314312
Lomsadze A, Ter-Hovhannisyan V, Chernoff YO, Borodovsky M., Nucleic Acids Res. 33(20), 2005
PMID: 16314312
UniProt: the universal protein knowledgebase.
The UniProt Consortium., Nucleic Acids Res. 45(D1), 2016
PMID: 27899622
The UniProt Consortium., Nucleic Acids Res. 45(D1), 2016
PMID: 27899622
BlastKOALA and GhostKOALA: KEGG Tools for Functional Characterization of Genome and Metagenome Sequences.
Kanehisa M, Sato Y, Morishima K., J. Mol. Biol. 428(4), 2015
PMID: 26585406
Kanehisa M, Sato Y, Morishima K., J. Mol. Biol. 428(4), 2015
PMID: 26585406
InterProScan 5: genome-scale protein function classification.
Jones P, Binns D, Chang HY, Fraser M, Li W, McAnulla C, McWilliam H, Maslen J, Mitchell A, Nuka G, Pesseat S, Quinn AF, Sangrador-Vegas A, Scheremetjew M, Yong SY, Lopez R, Hunter S., Bioinformatics 30(9), 2014
PMID: 24451626
Jones P, Binns D, Chang HY, Fraser M, Li W, McAnulla C, McWilliam H, Maslen J, Mitchell A, Nuka G, Pesseat S, Quinn AF, Sangrador-Vegas A, Scheremetjew M, Yong SY, Lopez R, Hunter S., Bioinformatics 30(9), 2014
PMID: 24451626
WEGO: a web tool for plotting GO annotations.
Ye J, Fang L, Zheng H, Zhang Y, Chen J, Zhang Z, Wang J, Li S, Li R, Bolund L, Wang J., Nucleic Acids Res. 34(Web Server issue), 2006
PMID: 16845012
Ye J, Fang L, Zheng H, Zhang Y, Chen J, Zhang Z, Wang J, Li S, Li R, Bolund L, Wang J., Nucleic Acids Res. 34(Web Server issue), 2006
PMID: 16845012
PISCES: a protein sequence culling server.
Wang G, Dunbrack RL Jr., Bioinformatics 19(12), 2003
PMID: 12912846
Wang G, Dunbrack RL Jr., Bioinformatics 19(12), 2003
PMID: 12912846
Automated generation of heuristics for biological sequence comparison.
Slater GS, Birney E., BMC Bioinformatics 6(), 2005
PMID: 15713233
Slater GS, Birney E., BMC Bioinformatics 6(), 2005
PMID: 15713233
progressiveMauve: multiple genome alignment with gene gain, loss and rearrangement.
Darling AE, Mau B, Perna NT., PLoS ONE 5(6), 2010
PMID: 20593022
Darling AE, Mau B, Perna NT., PLoS ONE 5(6), 2010
PMID: 20593022
Transcript mapping with high-density oligonucleotide tiling arrays.
Huber W, Toedling J, Steinmetz LM., Bioinformatics 22(16), 2006
PMID: 16787969
Huber W, Toedling J, Steinmetz LM., Bioinformatics 22(16), 2006
PMID: 16787969
MAFFT multiple sequence alignment software version 7: improvements in performance and usability.
Katoh K, Standley DM., Mol. Biol. Evol. 30(4), 2013
PMID: 23329690
Katoh K, Standley DM., Mol. Biol. Evol. 30(4), 2013
PMID: 23329690
Fast and accurate short read alignment with Burrows-Wheeler transform.
Li H, Durbin R., Bioinformatics 25(14), 2009
PMID: 19451168
Li H, Durbin R., Bioinformatics 25(14), 2009
PMID: 19451168
A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff: SNPs in the genome of Drosophila melanogaster strain w1118; iso-2; iso-3.
Cingolani P, Platts A, Wang le L, Coon M, Nguyen T, Wang L, Land SJ, Lu X, Ruden DM., Fly (Austin) 6(2), 2012
PMID: 22728672
Cingolani P, Platts A, Wang le L, Coon M, Nguyen T, Wang L, Land SJ, Lu X, Ruden DM., Fly (Austin) 6(2), 2012
PMID: 22728672
BreakDancer: Identification of Genomic Structural Variation from Paired-End Read Mapping.
Fan X, Abbott TE, Larson D, Chen K., Curr Protoc Bioinformatics 45(), 2014
PMID: 25152801
Fan X, Abbott TE, Larson D, Chen K., Curr Protoc Bioinformatics 45(), 2014
PMID: 25152801
Integrative genomics viewer.
Robinson JT, Thorvaldsdottir H, Winckler W, Guttman M, Lander ES, Getz G, Mesirov JP., Nat. Biotechnol. 29(1), 2011
PMID: 21221095
Robinson JT, Thorvaldsdottir H, Winckler W, Guttman M, Lander ES, Getz G, Mesirov JP., Nat. Biotechnol. 29(1), 2011
PMID: 21221095
Basic local alignment search tool.
Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ., J. Mol. Biol. 215(3), 1990
PMID: 2231712
Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ., J. Mol. Biol. 215(3), 1990
PMID: 2231712
MUSCLE: multiple sequence alignment with high accuracy and high throughput.
Edgar RC., Nucleic Acids Res. 32(5), 2004
PMID: 15034147
Edgar RC., Nucleic Acids Res. 32(5), 2004
PMID: 15034147
trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses.
Capella-Gutierrez S, Silla-Martinez JM, Gabaldon T., Bioinformatics 25(15), 2009
PMID: 19505945
Capella-Gutierrez S, Silla-Martinez JM, Gabaldon T., Bioinformatics 25(15), 2009
PMID: 19505945
AUTHOR UNKNOWN, 2005
PAML 4: phylogenetic analysis by maximum likelihood.
Yang Z., Mol. Biol. Evol. 24(8), 2007
PMID: 17483113
Yang Z., Mol. Biol. Evol. 24(8), 2007
PMID: 17483113
Export
Markieren/ Markierung löschen
Markierte Publikationen
Web of Science
Dieser Datensatz im Web of Science®Quellen
PMID: 30673782
PubMed | Europe PMC
Suchen in
Google Scholar