Whole-genome sequence of the bovine blood fluke Schistosoma bovis supports interspecific hybridization with S. haematobium

Oey H, Zakrzewski M, Gravermann K, Young ND, Korhonen PK, Gobert GN, Nawaratna S, Hasan S, Martínez DM, You H, Lavin M, et al. (2019)
PLOS Pathogens 15(1): e1007513.

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Oey H, Zakrzewski M, Gravermann K, et al. Whole-genome sequence of the bovine blood fluke Schistosoma bovis supports interspecific hybridization with S. haematobium. PLOS Pathogens. 2019;15(1): e1007513.
Oey, H., Zakrzewski, M., Gravermann, K., Young, N. D., Korhonen, P. K., Gobert, G. N., Nawaratna, S., et al. (2019). Whole-genome sequence of the bovine blood fluke Schistosoma bovis supports interspecific hybridization with S. haematobium. PLOS Pathogens, 15(1), e1007513. doi:10.1371/journal.ppat.1007513
Oey, H., Zakrzewski, M., Gravermann, K., Young, N. D., Korhonen, P. K., Gobert, G. N., Nawaratna, S., Hasan, S., Martínez, D. M., You, H., et al. (2019). Whole-genome sequence of the bovine blood fluke Schistosoma bovis supports interspecific hybridization with S. haematobium. PLOS Pathogens 15:e1007513.
Oey, H., et al., 2019. Whole-genome sequence of the bovine blood fluke Schistosoma bovis supports interspecific hybridization with S. haematobium. PLOS Pathogens, 15(1): e1007513.
H. Oey, et al., “Whole-genome sequence of the bovine blood fluke Schistosoma bovis supports interspecific hybridization with S. haematobium”, PLOS Pathogens, vol. 15, 2019, : e1007513.
Oey, H., Zakrzewski, M., Gravermann, K., Young, N.D., Korhonen, P.K., Gobert, G.N., Nawaratna, S., Hasan, S., Martínez, D.M., You, H., Lavin, M., Jones, M., Ragan, M.A., Stoye, J., Oleaga, A., Emery, A.M., Webster, B., Rollinson, D., Gasser, R.B., McManus, D.P., Krause, L.: Whole-genome sequence of the bovine blood fluke Schistosoma bovis supports interspecific hybridization with S. haematobium. PLOS Pathogens. 15, : e1007513 (2019).
Oey, Harald, Zakrzewski, Martha, Gravermann, Kerstin, Young, Neil D., Korhonen, Pasi K., Gobert, Geoffrey N., Nawaratna, Sujeevi, Hasan, Shibab, Martínez, David M., You, Hong, Lavin, Martin, Jones, Malcolm, Ragan, Mark A., Stoye, Jens, Oleaga, Ana, Emery, Aidan M., Webster, Bonnie, Rollinson, David, Gasser, Robin B., McManus, Donald P., and Krause, Lutz. “Whole-genome sequence of the bovine blood fluke Schistosoma bovis supports interspecific hybridization with S. haematobium”. PLOS Pathogens 15.1 (2019): e1007513.

66 References

Daten bereitgestellt von Europe PubMed Central.

Schistosomiasis.
McManus DP, Dunne DW, Sacko M, Utzinger J, Vennervald BJ, Zhou XN., Nat Rev Dis Primers 4(1), 2018
PMID: 30093684
Chasing helminths and their economic impact on farmed ruminants.
Charlier J, van der Voort M, Kenyon F, Skuce P, Vercruysse J., Trends Parasitol. 30(7), 2014
PMID: 24888669
Schistosomiasis in cattle.
De Bont J, Vercruysse J., Adv. Parasitol. 41(), 1998
PMID: 9734296
Outbreak of urogenital schistosomiasis in Corsica (France): an epidemiological case study.
Boissier J, Grech-Angelini S, Webster BL, Allienne JF, Huyse T, Mas-Coma S, Toulza E, Barre-Cardi H, Rollinson D, Kincaid-Smith J, Oleaga A, Galinier R, Foata J, Rognon A, Berry A, Mouahid G, Henneron R, Mone H, Noel H, Mitta G., Lancet Infect Dis 16(8), 2016
PMID: 27197551
A review of human carcinogens--Part B: biological agents.
Bouvard V, Baan R, Straif K, Grosse Y, Secretan B, El Ghissassi F, Benbrahim-Tallaa L, Guha N, Freeman C, Galichet L, Cogliano V; WHO International Agency for Research on Cancer Monograph Working Group, Schulz TF, Mueller N, Grulich A, Sitas F, Polman K, Chen CJ, Fang YY, Herrero R, Vennervald BJ, Mahieux R, Megraud F, Zoulim F, Blum H, zur Hausen H, Banks L, Carbone A, Serraino D, Matsuoka M, Hong ST, Kew MC, de Sanjose S, Ernberg I, Sripa B, Hall A, Forman D, Newton R, Cesarman E, Dittmer D, Fontham ET, Lambert PF, Moss S, Murphy E, Schiffman M, Stuver S, Whitby D, Munoz N., Lancet Oncol. 10(4), 2009
PMID: 19350698
Association between genital schistosomiasis and HIV in rural Zimbabwean women.
Kjetland EF, Ndhlovu PD, Gomo E, Mduluza T, Midzi N, Gwanzura L, Mason PR, Sandvik L, Friis H, Gundersen SG., AIDS 20(4), 2006
PMID: 16470124
Schistosomiasis collection at NHM (SCAN).
Emery AM, Allan FE, Rabone ME, Rollinson D., Parasit Vectors 5(), 2012
PMID: 22943137
GenomeScope: fast reference-free genome profiling from short reads.
Vurture GW, Sedlazeck FJ, Nattestad M, Underwood CJ, Fang H, Gurtowski J, Schatz MC., Bioinformatics 33(14), 2017
PMID: 28369201
A systematically improved high quality genome and transcriptome of the human blood fluke Schistosoma mansoni.
Protasio AV, Tsai IJ, Babbage A, Nichol S, Hunt M, Aslett MA, De Silva N, Velarde GS, Anderson TJ, Clark RC, Davidson C, Dillon GP, Holroyd NE, LoVerde PT, Lloyd C, McQuillan J, Oliveira G, Otto TD, Parker-Manuel SJ, Quail MA, Wilson RA, Zerlotini A, Dunne DW, Berriman M., PLoS Negl Trop Dis 6(1), 2012
PMID: 22253936
The genome of the blood fluke Schistosoma mansoni.
Berriman M, Haas BJ, LoVerde PT, Wilson RA, Dillon GP, Cerqueira GC, Mashiyama ST, Al-Lazikani B, Andrade LF, Ashton PD, Aslett MA, Bartholomeu DC, Blandin G, Caffrey CR, Coghlan A, Coulson R, Day TA, Delcher A, DeMarco R, Djikeng A, Eyre T, Gamble JA, Ghedin E, Gu Y, Hertz-Fowler C, Hirai H, Hirai Y, Houston R, Ivens A, Johnston DA, Lacerda D, Macedo CD, McVeigh P, Ning Z, Oliveira G, Overington JP, Parkhill J, Pertea M, Pierce RJ, Protasio AV, Quail MA, Rajandream MA, Rogers J, Sajid M, Salzberg SL, Stanke M, Tivey AR, White O, Williams DL, Wortman J, Wu W, Zamanian M, Zerlotini A, Fraser-Liggett CM, Barrell BG, El-Sayed NM., Nature 460(7253), 2009
PMID: 19606141
Whole-genome sequence of Schistosoma haematobium.
Young ND, Jex AR, Li B, Liu S, Yang L, Xiong Z, Li Y, Cantacessi C, Hall RS, Xu X, Chen F, Wu X, Zerlotini A, Oliveira G, Hofmann A, Zhang G, Fang X, Kang Y, Campbell BE, Loukas A, Ranganathan S, Rollinson D, Rinaldi G, Brindley PJ, Yang H, Wang J, Wang J, Gasser RB., Nat. Genet. 44(2), 2012
PMID: 22246508
The Schistosoma japonicum genome reveals features of host-parasite interplay.
Schistosoma japonicum Genome Sequencing and Functional Analysis Consortium, Zhou Y, Zheng H, Chen Y, Zhang L, Wang K, Guo J, Huang Z, Zhang B, Huang W, Jin K, Dou T, Hasegawa M, Wang L, Zhang Y, Zhou J, Tao L, Cao Z, Li Y, Vinar T, Brejova B, Brown D, Li M, Miller DJ, Blair D, Zhong Y, Chen Z, Liu F, Hu W, Wang ZQ, Zhang QH, Song HD, Chen S, Xu X, Xu B, Ju C, Huang Y, Brindley PJ, McManus DP, Feng Z, Han ZG, Lu G, Ren S, Wang Y, Gu W, Kang H, Chen J, Chen X, Chen S, Wang L, Yan J, Wang B, Lv X, Jin L, Wang B, Pu S, Zhang X, Zhang W, Hu Q, Zhu G, Wang J, Yu J, Wang J, Yang H, Ning Z, Beriman M, Wei CL, Ruan Y, Zhao G, Wang S, Liu F, Zhou Y, Wang ZQ, Lu G, Zheng H, Brindley PJ, McManus DP, Blair D, Zhang QH, Zhong Y, Wang S, Han ZG, Chen Z, Wang S, Han ZG, Chen Z., Nature 460(7253), 2009
PMID: 19606140
A revision of the interrelationships of Schistosoma including the recently described Schistosoma guineensis.
Webster BL, Southgate VR, Littlewood DT., Int. J. Parasitol. 36(8), 2006
PMID: 16730013
Integrated genome analysis suggests that most conserved non-coding sequences are regulatory factor binding sites.
Hemberg M, Gray JM, Cloonan N, Kuersten S, Grimmond S, Greenberg ME, Kreiman G., Nucleic Acids Res. 40(16), 2012
PMID: 22684627
Ultraconserved elements in the human genome.
Bejerano G, Pheasant M, Makunin I, Stephen S, Kent WJ, Mattick JS, Haussler D., Science 304(5675), 2004
PMID: 15131266
Arrays of ultraconserved non-coding regions span the loci of key developmental genes in vertebrate genomes.
Sandelin A, Bailey P, Bruce S, Engstrom PG, Klos JM, Wasserman WW, Ericson J, Lenhard B., BMC Genomics 5(1), 2004
PMID: 15613238
Whole genome amplification and exome sequencing of archived schistosome miracidia.
Le Clec'h W, Chevalier FD, McDew-White M, Allan F, Webster BL, Gouvras AN, Kinunghi S, Tchuem Tchuente LA, Garba A, Mohammed KA, Ame SM, Webster JP, Rollinson D, Emery AM, Anderson TJC., Parasitology 145(13), 2018
PMID: 29806576
The Genome Analysis Toolkit: a MapReduce framework for analyzing next-generation DNA sequencing data.
McKenna A, Hanna M, Banks E, Sivachenko A, Cibulskis K, Kernytsky A, Garimella K, Altshuler D, Gabriel S, Daly M, DePristo MA., Genome Res. 20(9), 2010
PMID: 20644199

AUTHOR UNKNOWN, 2017
Schistosomiasis vaccines: where do we stand?
Tebeje BM, Harvie M, You H, Loukas A, McManus DP., Parasit Vectors 9(1), 2016
PMID: 27716365
Advancing a vaccine to prevent human schistosomiasis.
Merrifield M, Hotez PJ, Beaumier CM, Gillespie P, Strych U, Hayward T, Bottazzi ME., Vaccine 34(26), 2016
PMID: 27036511
Constraining the Deep Origin of Parasitic Flatworms and Host-Interactions with Fossil Evidence.
De Baets K, Dentzien-Dias P, Upeniece I, Verneau O, Donoghue PC., Adv. Parasitol. 90(), 2015
PMID: 26597066
Schistosoma mansoni and Biomphalaria: past history and future trends.
Morgan JA, Dejong RJ, Snyder SD, Mkoji GM, Loker ES., Parasitology 123 Suppl(), 2001
PMID: 11769285
Evidence of intestinal parasites of dinosaurs.
Poinar G Jr, Boucot AJ., Parasitology 133(Pt 2), 2006
PMID: 16623965
Trace Fossil Evidence of Trematode-Bivalve Parasite-Host Interactions in Deep Time.
Huntley JW, De Baets K., Adv. Parasitol. 90(), 2015
PMID: 26597068
Intracellular promiscuity in Schistosoma mansoni: nuclear transcribed DNA sequences are part of a mitochondrial minisatellite region.
Pena HB, de Souza CP, Simpson AJ, Pena SD., Proc. Natl. Acad. Sci. U.S.A. 92(3), 1995
PMID: 7846078
Mitochondrial gene content, arrangement and composition compared in African and Asian schistosomes.
Le TH, Humair PF, Blair D, Agatsuma T, Littlewood DT, McManus DP., Mol. Biochem. Parasitol. 117(1), 2001
PMID: 11551632

AUTHOR UNKNOWN, 0
De novo assembly of human genomes with massively parallel short read sequencing.
Li R, Zhu H, Ruan J, Qian W, Fang X, Shi Z, Li Y, Li S, Shan G, Kristiansen K, Li S, Yang H, Wang J, Wang J., Genome Res. 20(2), 2009
PMID: 20019144
CEGMA: a pipeline to accurately annotate core genes in eukaryotic genomes.
Parra G, Bradnam K, Korf I., Bioinformatics 23(9), 2007
PMID: 17332020
Using the miraEST assembler for reliable and automated mRNA transcript assembly and SNP detection in sequenced ESTs.
Chevreux B, Pfisterer T, Drescher B, Driesel AJ, Muller WE, Wetter T, Suhai S., Genome Res. 14(6), 2004
PMID: 15140833
GAM-NGS: genomic assemblies merger for next generation sequencing.
Vicedomini R, Vezzi F, Scalabrin S, Arvestad L, Policriti A., BMC Bioinformatics 14 Suppl 7(), 2013
PMID: 23815503
Canu: scalable and accurate long-read assembly via adaptive k-mer weighting and repeat separation.
Koren S, Walenz BP, Berlin K, Miller JR, Bergman NH, Phillippy AM., Genome Res. 27(5), 2017
PMID: 28298431
Fast gapped-read alignment with Bowtie 2.
Langmead B, Salzberg SL., Nat. Methods 9(4), 2012
PMID: 22388286

AUTHOR UNKNOWN, 0

AUTHOR UNKNOWN, 0
MAKER: an easy-to-use annotation pipeline designed for emerging model organism genomes.
Cantarel BL, Korf I, Robb SM, Parra G, Ross E, Moore B, Holt C, Sanchez Alvarado A, Yandell M., Genome Res. 18(1), 2007
PMID: 18025269
AUGUSTUS: a web server for gene finding in eukaryotes.
Stanke M, Steinkamp R, Waack S, Morgenstern B., Nucleic Acids Res. 32(Web Server issue), 2004
PMID: 15215400
Gene identification in novel eukaryotic genomes by self-training algorithm.
Lomsadze A, Ter-Hovhannisyan V, Chernoff YO, Borodovsky M., Nucleic Acids Res. 33(20), 2005
PMID: 16314312
UniProt: the universal protein knowledgebase.
The UniProt Consortium., Nucleic Acids Res. 45(D1), 2016
PMID: 27899622
InterProScan 5: genome-scale protein function classification.
Jones P, Binns D, Chang HY, Fraser M, Li W, McAnulla C, McWilliam H, Maslen J, Mitchell A, Nuka G, Pesseat S, Quinn AF, Sangrador-Vegas A, Scheremetjew M, Yong SY, Lopez R, Hunter S., Bioinformatics 30(9), 2014
PMID: 24451626
WEGO: a web tool for plotting GO annotations.
Ye J, Fang L, Zheng H, Zhang Y, Chen J, Zhang Z, Wang J, Li S, Li R, Bolund L, Wang J., Nucleic Acids Res. 34(Web Server issue), 2006
PMID: 16845012
PISCES: a protein sequence culling server.
Wang G, Dunbrack RL Jr., Bioinformatics 19(12), 2003
PMID: 12912846
Automated generation of heuristics for biological sequence comparison.
Slater GS, Birney E., BMC Bioinformatics 6(), 2005
PMID: 15713233
Transcript mapping with high-density oligonucleotide tiling arrays.
Huber W, Toedling J, Steinmetz LM., Bioinformatics 22(16), 2006
PMID: 16787969
Fast and accurate short read alignment with Burrows-Wheeler transform.
Li H, Durbin R., Bioinformatics 25(14), 2009
PMID: 19451168
A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff: SNPs in the genome of Drosophila melanogaster strain w1118; iso-2; iso-3.
Cingolani P, Platts A, Wang le L, Coon M, Nguyen T, Wang L, Land SJ, Lu X, Ruden DM., Fly (Austin) 6(2), 2012
PMID: 22728672
BreakDancer: Identification of Genomic Structural Variation from Paired-End Read Mapping.
Fan X, Abbott TE, Larson D, Chen K., Curr Protoc Bioinformatics 45(), 2014
PMID: 25152801
Integrative genomics viewer.
Robinson JT, Thorvaldsdottir H, Winckler W, Guttman M, Lander ES, Getz G, Mesirov JP., Nat. Biotechnol. 29(1), 2011
PMID: 21221095
Basic local alignment search tool.
Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ., J. Mol. Biol. 215(3), 1990
PMID: 2231712
trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses.
Capella-Gutierrez S, Silla-Martinez JM, Gabaldon T., Bioinformatics 25(15), 2009
PMID: 19505945

AUTHOR UNKNOWN, 2005
PAML 4: phylogenetic analysis by maximum likelihood.
Yang Z., Mol. Biol. Evol. 24(8), 2007
PMID: 17483113

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