Based Upon Repeat Pattern (BURP): an algorithm to characterize the long-term evolution of Staphylococcus aureus populations based on spa polymorphisms

Mellmann A, Weniger T, Berssenbrügge C, Rothgänger J, Sammeth M, Stoye J, Harmsen D (2007)
BMC MICROBIOLOGY 7(1): 98.

Download
Es wurde kein Volltext hochgeladen. Nur Publikationsnachweis!
Zeitschriftenaufsatz | Veröffentlicht | Englisch
Autor
; ; ; ; ; ;
Abstract / Bemerkung
Background: For typing of Staphylococcus aureus, DNA sequencing of the repeat region of the protein A ( spa) gene is a well established discriminatory method for outbreak investigations. Recently, it was hypothesized that this region also reflects long-term epidemiology. However, no automated and objective algorithm existed to cluster different repeat regions. In this study, the Based Upon Repeat Pattern ( BURP) implementation that is a heuristic variant of the newly described EDSI algorithm was investigated to infer the clonal relatedness of different spa types. For calibration of BURP parameters, 400 representative S. aureus strains with different spa types were characterized by MLST and clustered using eBURST as "gold standard" for their phylogeny. Typing concordance analysis between eBURST and BURP clustering ( spa-CC) were performed using all possible BURP parameters to determine their optimal combination. BURP was subsequently evaluated with a strain collection reflecting the breadth of diversity of S. aureus (JCM 2002; 40: 4544). Results: In total, the 400 strains exhibited 122 different MLST types. eBURST grouped them into 23 clonal complexes (CC; 354 isolates) and 33 singletons (46 isolates). BURP clustering of spa types using all possible parameter combinations and subsequent comparison with eBURST CCs resulted in concordances ranging from 8.2 to 96.2%. However, 96.2% concordance was reached only if spa types shorter than 8 repeats were excluded, which resulted in 37% excluded spa types. Therefore, the optimal combination of the BURP parameters was "exclude spa types shorter than 5 repeats" and "cluster spa types into spa-CC if cost distances are less than 4" exhibiting 95.3% concordance to eBURST. This algorithm identified 24 spa-CCs, 40 singletons, and excluded only 7.8% spa types. Analyzing the natural population with these parameters, the comparison of whole-genome micro-array groupings ( at the level of 0.31 Pearson correlation index) and spa-CCs gave a concordance of 87.1%; BURP spa-CCs vs. manually grouped spa types resulted in 95.7% concordance. Conclusion: BURP is the first automated and objective tool to infer clonal relatedness from spa repeat regions. It is able to extract an evolutionary signal rather congruent to MLST and micro-array data.
Erscheinungsjahr
Zeitschriftentitel
BMC MICROBIOLOGY
Band
7
Ausgabe
1
Seite(n)
98
ISSN
PUB-ID

Zitieren

Mellmann A, Weniger T, Berssenbrügge C, et al. Based Upon Repeat Pattern (BURP): an algorithm to characterize the long-term evolution of Staphylococcus aureus populations based on spa polymorphisms. BMC MICROBIOLOGY. 2007;7(1):98.
Mellmann, A., Weniger, T., Berssenbrügge, C., Rothgänger, J., Sammeth, M., Stoye, J., & Harmsen, D. (2007). Based Upon Repeat Pattern (BURP): an algorithm to characterize the long-term evolution of Staphylococcus aureus populations based on spa polymorphisms. BMC MICROBIOLOGY, 7(1), 98. doi:10.1186/1471-2180-7-98
Mellmann, A., Weniger, T., Berssenbrügge, C., Rothgänger, J., Sammeth, M., Stoye, J., and Harmsen, D. (2007). Based Upon Repeat Pattern (BURP): an algorithm to characterize the long-term evolution of Staphylococcus aureus populations based on spa polymorphisms. BMC MICROBIOLOGY 7, 98.
Mellmann, A., et al., 2007. Based Upon Repeat Pattern (BURP): an algorithm to characterize the long-term evolution of Staphylococcus aureus populations based on spa polymorphisms. BMC MICROBIOLOGY, 7(1), p 98.
A. Mellmann, et al., “Based Upon Repeat Pattern (BURP): an algorithm to characterize the long-term evolution of Staphylococcus aureus populations based on spa polymorphisms”, BMC MICROBIOLOGY, vol. 7, 2007, pp. 98.
Mellmann, A., Weniger, T., Berssenbrügge, C., Rothgänger, J., Sammeth, M., Stoye, J., Harmsen, D.: Based Upon Repeat Pattern (BURP): an algorithm to characterize the long-term evolution of Staphylococcus aureus populations based on spa polymorphisms. BMC MICROBIOLOGY. 7, 98 (2007).
Mellmann, Alexander, Weniger, Thomas, Berssenbrügge, Christoph, Rothgänger, Jörg, Sammeth, Michael, Stoye, Jens, and Harmsen, Dag. “Based Upon Repeat Pattern (BURP): an algorithm to characterize the long-term evolution of Staphylococcus aureus populations based on spa polymorphisms”. BMC MICROBIOLOGY 7.1 (2007): 98.

124 Zitationen in Europe PMC

Daten bereitgestellt von Europe PubMed Central.

Predictors of colonization with Staphylococcus species among patients scheduled for cardiac and orthopedic interventions at tertiary care hospitals in north-eastern Germany-a prevalence screening study.
Neidhart S, Zaatreh S, Klinder A, Redanz S, Spitzmüller R, Holtfreter S, Warnke P, Alozie A, Henck V, Göhler A, Ellenrieder M, AbouKoura M, Divchev D, Gümbel D, Napp M, Steinhoff G, Nienaber C, Ekkernkamp A, Mittelmeier W, Güthoff C, Podbielski A, Stengel D, Bader R., Eur J Clin Microbiol Infect Dis 37(4), 2018
PMID: 29270860
Longitudinal Case Series of Staphylococcus aureus Colonization and Infection in Two Cohorts of Rural Iowans.
Smith TC, Hellwig EJ, Wardyn SE, Kates AE, Thapaliya D., Microb Drug Resist 24(4), 2018
PMID: 29298107
Spa type distribution in MRSA and MSSA bacteremias and association of spa clonal complexes with the clinical characteristics of bacteremia.
Jokinen E, Lindholm L, Huttunen R, Huhtala H, Vuento R, Vuopio J, Syrjänen J., Eur J Clin Microbiol Infect Dis 37(5), 2018
PMID: 29428976
Emergence and spread of worldwide Staphylococcus aureus clones among cystic fibrosis patients.
Garbacz K, Piechowicz L, Podkowik M, Mroczkowska A, Empel J, Bania J., Infect Drug Resist 11(), 2018
PMID: 29503574
Molecular Epidemiology of Multidrug-Resistant Bacteria Isolated from Libyan and Syrian Patients with War Injuries in Two Bundeswehr Hospitals in Germany.
Frickmann H, Köller T, Hagen RM, Ebert KP, Müller M, Wenzel W, Gatzer R, Schotte U, Binder A, Skusa R, Warnke P, Podbielski A, Rückert C, Kreikemeyer B., Eur J Microbiol Immunol (Bp) 8(1), 2018
PMID: 29760959
Staphylococcus aureus in the nose and throat of Iowan families.
Hanson BM, Kates AE, O'Malley SM, Mills E, Herwaldt LA, Torner JC, Dawson JD, Farina SA, Klostermann C, Wu JY, Quick MK, Forshey BM, Smith TC., Epidemiol Infect 146(14), 2018
PMID: 29932041
Livestock-associated Staphylococcus aureus on Polish pig farms.
Mroczkowska A, Żmudzki J, Marszałek N, Orczykowska-Kotyna M, Komorowska I, Nowak A, Grzesiak A, Czyżewska-Dors E, Dors A, Pejsak Z, Hryniewicz W, Wyszomirski T, Empel J., PLoS One 12(2), 2017
PMID: 28151984
Prevalence and molecular characterization of Staphylococcus aureus in commercially available meat over a one-year period in Iowa, USA.
Thapaliya D, Forshey BM, Kadariya J, Quick MK, Farina S, O' Brien A, Nair R, Nworie A, Hanson B, Kates A, Wardyn S, Smith TC., Food Microbiol 65(), 2017
PMID: 28399994
Molecular Characterization of Community Acquired Staphylococcus aureus Bacteremia in Young Children in Southern Mozambique, 2001-2009.
Vubil D, Garrine M, Ruffing U, Acácio S, Sigaúque B, Alonso PL, von Müller L, Herrmann M, Mandomando I., Front Microbiol 8(), 2017
PMID: 28522992
Emerging multidrug-resistant Bengal Bay clone ST772-MRSA-V in Norway: molecular epidemiology 2004-2014.
Blomfeldt A, Larssen KW, Moghen A, Gabrielsen C, Elstrøm P, Aamot HV, Jørgensen SB., Eur J Clin Microbiol Infect Dis 36(10), 2017
PMID: 28555401
Environmental surveillance identifies multiple introductions of MRSA CC398 in an Equine Veterinary Hospital in the UK, 2011-2016.
Bortolami A, Williams NJ, McGowan CM, Kelly PG, Archer DC, Corrò M, Pinchbeck G, Saunders CJ, Timofte D., Sci Rep 7(1), 2017
PMID: 28710350
Multidrug and Mupirocin Resistance in Environmental Methicillin-Resistant Staphylococcus aureus (MRSA) Isolates from Homes of People Diagnosed with Community-Onset MRSA Infection.
Shahbazian JH, Hahn PD, Ludwig S, Ferguson J, Baron P, Christ A, Spicer K, Tolomeo P, Torrie AM, Bilker WB, Cluzet VC, Hu B, Julian K, Nachamkin I, Rankin SC, Morris DO, Lautenbach E, Davis MF., Appl Environ Microbiol 83(22), 2017
PMID: 28939607
First Report of cfr-Carrying Plasmids in the Pandemic Sequence Type 22 Methicillin-Resistant Staphylococcus aureus Staphylococcal Cassette Chromosome mec Type IV Clone.
Shore AC, Lazaris A, Kinnevey PM, Brennan OM, Brennan GI, O'Connell B, Feßler AT, Schwarz S, Coleman DC., Antimicrob Agents Chemother 60(5), 2016
PMID: 26953212
The recombination dynamics of Staphylococcus aureus inferred from spA gene.
Santos-Júnior CD, Veríssimo A, Costa J., BMC Microbiol 16(1), 2016
PMID: 27400707
Prevalence of nasal colonisation by methicillin-sensitive and methicillin-resistant Staphylococcus aureus among healthcare workers and students in Madagascar.
Hogan B, Rakotozandrindrainy R, Al-Emran H, Dekker D, Hahn A, Jaeger A, Poppert S, Frickmann H, Hagen RM, Micheel V, Crusius S, Heriniaina JN, Rakotondrainiarivelo JP, Razafindrabe T, May J, Schwarz NG., BMC Infect Dis 16(1), 2016
PMID: 27526771
MRSA Prevalence and Associated Risk Factors among Health-Care Workers in Non-outbreak Situations in the Dutch-German EUREGIO.
Sassmannshausen R, Deurenberg RH, Köck R, Hendrix R, Jurke A, Rossen JW, Friedrich AW., Front Microbiol 7(), 2016
PMID: 27597843
Identification and functional study of type III-A CRISPR-Cas systems in clinical isolates of Staphylococcus aureus.
Cao L, Gao CH, Zhu J, Zhao L, Wu Q, Li M, Sun B., Int J Med Microbiol 306(8), 2016
PMID: 27600408
HIV and colonization with Staphylococcus aureus in two maximum-security prisons in New York State.
Befus MB, Miko BA, Herzig CT, Keleekai N, Mukherjee DV, Larson E, Lowy FD., J Infect 73(6), 2016
PMID: 27592264
Molecular Epidemiology of Staphylococcus aureus in the General Population in Northeast Germany: Results of the Study of Health in Pomerania (SHIP-TREND-0).
Holtfreter S, Grumann D, Balau V, Barwich A, Kolata J, Goehler A, Weiss S, Holtfreter B, Bauerfeind SS, Döring P, Friebe E, Haasler N, Henselin K, Kühn K, Nowotny S, Radke D, Schulz K, Schulz SR, Trübe P, Vu CH, Walther B, Westphal S, Cuny C, Witte W, Völzke H, Grabe HJ, Kocher T, Steinmetz I, Bröker BM., J Clin Microbiol 54(11), 2016
PMID: 27605711
Antibiotic resistance and clonal diversity of invasive Staphylococcus aureus in the rural Ashanti Region, Ghana.
Dekker D, Wolters M, Mertens E, Boahen KG, Krumkamp R, Eibach D, Schwarz NG, Adu-Sarkodie Y, Rohde H, Christner M, Marks F, Sarpong N, May J., BMC Infect Dis 16(1), 2016
PMID: 27899074
Characterization of Methicillin-Resistant Staphylococcus aureus Isolated from Healthy Turkeys and Broilers Using DNA Microarrays.
El-Adawy H, Ahmed M, Hotzel H, Monecke S, Schulz J, Hartung J, Ehricht R, Neubauer H, Hafez HM., Front Microbiol 7(), 2016
PMID: 28066346
In vivo attenuation and genetic evolution of a ST247-SCCmecI MRSA clone after 13 years of pathogenic bronchopulmonary colonization in a patient with cystic fibrosis: implications of the innate immune response.
López-Collazo E, Jurado T, de Dios Caballero J, Pérez-Vázquez M, Vindel A, Hernández-Jiménez E, Tamames J, Cubillos-Zapata C, Manrique M, Tobes R, Máiz L, Cantón R, Baquero F, Del Campo R., Mucosal Immunol 8(2), 2015
PMID: 25118167
Ensuring backwards compatibility: traditional genotyping efforts in the era of whole genome sequencing.
Bletz S, Mellmann A, Rothgänger J, Harmsen D., Clin Microbiol Infect 21(4), 2015
PMID: 25658529
Skin and soft tissue infections in intercontinental travellers and the import of multi-resistant Staphylococcus aureus to Europe.
Nurjadi D, Friedrich-Jänicke B, Schäfer J, Van Genderen PJ, Goorhuis A, Perignon A, Neumayr A, Mueller A, Kantele A, Schunk M, Gascon J, Stich A, Hatz C, Caumes E, Grobusch MP, Fleck R, Mockenhaupt FP, Zanger P., Clin Microbiol Infect 21(6), 2015
PMID: 25753191
Low anti-staphylococcal IgG responses in granulomatosis with polyangiitis patients despite long-term Staphylococcus aureus exposure.
Glasner C, van Timmeren MM, Stobernack T, Omansen TF, Raangs EC, Rossen JW, de Goffau MC, Arends JP, Kampinga GA, Koedijk DG, Neef J, Buist G, Tavakol M, van Wamel WJ, Rutgers A, Stegeman CA, Kallenberg CG, Heeringa P, van Dijl JM., Sci Rep 5(), 2015
PMID: 25641235
State-wide surveillance of antibiotic resistance patterns and spa types of methicillin-resistant Staphylococcus aureus from blood cultures in North Rhine-Westphalia, 2011-2013.
Cuny C, Layer F, Werner G, Harmsen D, Daniels-Haardt I, Jurke A, Mellmann A, Witte W, Köck R., Clin Microbiol Infect 21(8), 2015
PMID: 25704447
Epidemiological and biological determinants of Staphylococcus aureus clinical infection in New York State maximum security prisons.
Miko BA, Befus M, Herzig CT, Mukherjee DV, Apa ZL, Bai RY, Tanner JP, Gage D, Genovese M, Koenigsmann CJ, Larson EL, Lowy FD., Clin Infect Dis 61(2), 2015
PMID: 25810281
Molecular characterization of methicillin-resistant Staphylococcus aureus (MRSA) nasal colonization and infection isolates in a Veterans Affairs hospital.
Eko KE, Forshey BM, Carrel M, Schweizer ML, Perencevich EN, Smith TC., Antimicrob Resist Infect Control 4(), 2015
PMID: 25838886
Swine Farming Is a Risk Factor for Infection With and High Prevalence of Carriage of Multidrug-Resistant Staphylococcus aureus.
Wardyn SE, Forshey BM, Farina SA, Kates AE, Nair R, Quick MK, Wu JY, Hanson BM, O'Malley SM, Shows HW, Heywood EM, Beane-Freeman LE, Lynch CF, Carrel M, Smith TC., Clin Infect Dis 61(1), 2015
PMID: 25931444
Population Structure and Oxacillin Resistance of Staphylococcus aureus from Pigs and Pork Meat in South-West of Poland.
Krupa P, Bystroń J, Podkowik M, Empel J, Mroczkowska A, Bania J., Biomed Res Int 2015(), 2015
PMID: 26064878
Screening agars for MRSA: evaluation of a stepwise diagnostic approach with two different selective agars for the screening for methicillin-resistant Staphylococcus aureus (MRSA).
Micheel V, Hogan B, Köller T, Warnke P, Crusius S, Hinz R, Hagen RM, Schwarz NG, Frickmann H., Mil Med Res 2(), 2015
PMID: 26199735
Prevalence and molecular epidemiology of Staphylococcus aureus in Swedish nursing homes - as revealed in the SHADES study.
Stark L, Olofsson M, Löfgren S, Mölstad S, Lindgren PE, Matussek A., Epidemiol Infect 142(6), 2014
PMID: 23962597
Methicillin-resistant Staphylococcus aureus carrying the mecC gene: emergence in Spain and report of a fatal case of bacteraemia.
García-Garrote F, Cercenado E, Marín M, Bal M, Trincado P, Corredoira J, Ballesteros C, Pita J, Alonso P, Vindel A., J Antimicrob Chemother 69(1), 2014
PMID: 23975743
Staphylococcus aureus nasal carriage among patients and health care workers in São Tomé and Príncipe.
Conceição T, Santos Silva I, de Lencastre H, Aires-de-Sousa M., Microb Drug Resist 20(1), 2014
PMID: 24024594
Population structure of methicillin-susceptible Staphylococcus aureus (MSSA) in Portugal over a 19-year period (1992-2011).
Tavares A, Faria NA, de Lencastre H, Miragaia M., Eur J Clin Microbiol Infect Dis 33(3), 2014
PMID: 24057140
Genetic characterization of Staphylococcus aureus isolates causing bloodstream infections in Austria.
Luxner J, Zarfel G, Johler S, Feierl G, Leitner E, Hoenigl M, Grisold AJ., Diagn Microbiol Infect Dis 78(2), 2014
PMID: 24321355
Molecular epidemiology of Staphyloccocus aureus colonization in the Old Order of Amish of Lancaster County, Pennsylvania, USA.
Roghmann MC, Longinaker N, Croft L, Johnson JK, Lydecker AD, Stine OC., Epidemiol Infect 142(8), 2014
PMID: 24230465
Transmission of Staphylococcus aureus between mothers and infants in an African setting.
Schaumburg F, Alabi AS, Mombo-Ngoma G, Kaba H, Zoleko RM, Diop DA, Mackanga JR, Basra A, Gonzalez R, Menendez C, Grobusch MP, Kremsner PG, Köck R, Peters G, Ramharter M, Becker K., Clin Microbiol Infect 20(6), 2014
PMID: 24118578
A recommendation to perform a blood culture before the administration of intravenous antibiotics increased the detection of Staphylococcus aureus bacteremia.
Jogenfors A, Stark L, Svefors J, Löfgren S, Malmvall BE, Matussek A., Eur J Clin Microbiol Infect Dis 33(5), 2014
PMID: 24249284
Staphylococcus aureus ST398 from slaughter pigs in northeast China.
Yan X, Yu X, Tao X, Zhang J, Zhang B, Dong R, Xue C, Grundmann H, Zhang J., Int J Med Microbiol 304(3-4), 2014
PMID: 24418357
Dynamics of acquisition and loss of carriage of Staphylococcus aureus strains in the community: the effect of clonal complex.
Miller RR, Walker AS, Godwin H, Fung R, Votintseva A, Bowden R, Mant D, Peto TE, Crook DW, Knox K., J Infect 68(5), 2014
PMID: 24393651
Extensive genetic diversity identified among sporadic methicillin-resistant Staphylococcus aureus isolates recovered in Irish hospitals between 2000 and 2012.
Kinnevey PM, Shore AC, Brennan GI, Sullivan DJ, Ehricht R, Monecke S, Coleman DC., Antimicrob Agents Chemother 58(4), 2014
PMID: 24395241
Trends in antimicrobial non-susceptibility in methicillin-resistant Staphylococcus aureus from Germany (2004-2011).
Schaumburg F, Idelevich EA, Peters G, Mellmann A, von Eiff C, Becker K, Study Group., Clin Microbiol Infect 20(9), 2014
PMID: 24372797
Multiple-strain colonization in nasal carriers of Staphylococcus aureus.
Votintseva AA, Miller RR, Fung R, Knox K, Godwin H, Peto TE, Crook DW, Bowden R, Walker AS., J Clin Microbiol 52(4), 2014
PMID: 24501033
Prevalence of Staphylococcus aureus protein A (spa) mutants in the community and hospitals in Oxfordshire.
Votintseva AA, Fung R, Miller RR, Knox K, Godwin H, Wyllie DH, Bowden R, Crook DW, Walker AS., BMC Microbiol 14(), 2014
PMID: 24621342
Emergence of trimethoprim resistance gene dfrG in Staphylococcus aureus causing human infection and colonization in sub-Saharan Africa and its import to Europe.
Nurjadi D, Olalekan AO, Layer F, Shittu AO, Alabi A, Ghebremedhin B, Schaumburg F, Hofmann-Eifler J, Van Genderen PJ, Caumes E, Fleck R, Mockenhaupt FP, Herrmann M, Kern WV, Abdulla S, Grobusch MP, Kremsner PG, Wolz C, Zanger P., J Antimicrob Chemother 69(9), 2014
PMID: 24855123
Molecular characterization of methicillin-resistant Staphylococcus aureus clinical isolates obtained from the Rikers Island Jail System from 2009 to 2013.
Tanner J, Lin Y, Kornblum J, Herzig CT, Bystritsky R, Uhlemann AC, Lowy FD., J Clin Microbiol 52(8), 2014
PMID: 24899033
Emergence of SCCmec type III with variable antimicrobial resistance profiles and spa types among methicillin-resistant Staphylococcus aureus isolated from healthcare- and community-acquired infections in the west of Iran.
Mohammadi S, Sekawi Z, Monjezi A, Maleki MH, Soroush S, Sadeghifard N, Pakzad I, Azizi-Jalilian F, Emaneini M, Asadollahi K, Pourahmad F, Zarrilli R, Taherikalani M., Int J Infect Dis 25(), 2014
PMID: 24909489
Molecular epidemiology of community-associated methicillin-resistant Staphylococcus aureus in Spain: 2004-12.
Vindel A, Trincado P, Cuevas O, Ballesteros C, Bouza E, Cercenado E., J Antimicrob Chemother 69(11), 2014
PMID: 24990868
Methicillin-sensitive and methicillin-resistant Staphylococcus aureus nasal carriage in a random sample of non-hospitalized adult population in northern Germany.
Mehraj J, Akmatov MK, Strömpl J, Gatzemeier A, Layer F, Werner G, Pieper DH, Medina E, Witte W, Pessler F, Krause G., PLoS One 9(9), 2014
PMID: 25251407
Comparing whole-genome sequencing with Sanger sequencing for spa typing of methicillin-resistant Staphylococcus aureus.
Bartels MD, Petersen A, Worning P, Nielsen JB, Larner-Svensson H, Johansen HK, Andersen LP, Jarløv JO, Boye K, Larsen AR, Westh H., J Clin Microbiol 52(12), 2014
PMID: 25297335
Genotypes and oxacillin resistance of Staphylococcus aureus from chicken and chicken meat in Poland.
Krupa P, Bystroń J, Bania J, Podkowik M, Empel J, Mroczkowska A., Poult Sci 93(12), 2014
PMID: 25352679
Molecular characterization of methicillin-susceptible Staphylococcus aureus clinical isolates in the United States, 2004 to 2010.
Miko BA, Hafer CA, Lee CJ, Sullivan SB, Hackel MA, Johnson BM, Whittier S, Della-Latta P, Uhlemann AC, Lowy FD., J Clin Microbiol 51(3), 2013
PMID: 23284029
Evaluation of multiple-locus variable number of tandem repeats analysis for typing livestock-associated methicillin-resistant Staphylococcus aureus.
Brandt KM, Mellmann A, Ballhausen B, Jenke C, van der Wolf PJ, Broens EM, Becker K, Köck R., PLoS One 8(1), 2013
PMID: 23349886
Livestock-associated methicillin-resistant Staphylococcus aureus (MRSA) as causes of human infection and colonization in Germany.
Köck R, Schaumburg F, Mellmann A, Köksal M, Jurke A, Becker K, Friedrich AW., PLoS One 8(2), 2013
PMID: 23418434
High prevalence of hospital-associated methicillin-resistant Staphylococcus aureus in the community in Portugal: evidence for the blurring of community-hospital boundaries.
Tavares A, Miragaia M, Rolo J, Coelho C, de Lencastre H, CA-MRSA/MSSA working group., Eur J Clin Microbiol Infect Dis 32(10), 2013
PMID: 23604782
Diversity of methicillin-resistant Staphylococcus aureus (MRSA) strains isolated from inpatients of 30 hospitals in Orange County, California.
Hudson LO, Murphy CR, Spratt BG, Enright MC, Elkins K, Nguyen C, Terpstra L, Gombosev A, Kim D, Hannah P, Mikhail L, Alexander R, Moore DF, Huang SS., PLoS One 8(4), 2013
PMID: 23637976
Diversity of methicillin-resistant Staphylococcus aureus strains isolated from residents of 26 nursing homes in Orange County, California.
Hudson LO, Reynolds C, Spratt BG, Enright MC, Quan V, Kim D, Hannah P, Mikhail L, Alexander R, Moore DF, Godoy D, Bishop CJ, Huang SS., J Clin Microbiol 51(11), 2013
PMID: 24025901
Antimicrobial resistance and molecular epidemiology of Staphylococcus aureus from Ulaanbaatar, Mongolia.
Nair R, Hanson BM, Kondratowicz K, Dorjpurev A, Davaadash B, Enkhtuya B, Tundev O, Smith TC., PeerJ 1(), 2013
PMID: 24133636
Molecular characterization of Staphylococcus aureus from outpatients in the Caribbean reveals the presence of pandemic clones.
Uhlemann AC, Dumortier C, Hafer C, Taylor BS, Sánchez J, Rodriguez-Taveras C, Leon P, Rojas R, Olive C, Lowy FD., Eur J Clin Microbiol Infect Dis 31(4), 2012
PMID: 21789605
Positive predictive value of the Xpert MRSA assay diagnostic for universal patient screening at hospital admission: influence of the local ecology.
Roisin S, Laurent C, Nonhoff C, Deplano A, Hallin M, Byl B, Struelens MJ, Denis O., Eur J Clin Microbiol Infect Dis 31(5), 2012
PMID: 21874398
Identification of international circulating lineages of meticillin-resistant Staphylococcus aureus in the north of Spain and their glycopeptide and linezolid susceptibility.
Torres-Sangiao E, Pérez-Castro S, Fernández-Natal MI, Cisterna-Cáncer R, Zapico-González M, Fernández-Pérez B, Ojeda-Fernández E, Nebreda T, Gozalo-Margüello M, Fuster-Foz C, Roiz-Mesones MP, Miguel-Martín MD, Torroba L, Coira-Nieto A, Vasallo-Vidal F, Méndez-Lage S, Prieto-Rodriguez E, Eiros JM, Torres J, Bou G., J Med Microbiol 61(pt 2), 2012
PMID: 21980043
Antimicrobial susceptibility testing and genotypic characterization of Staphylococcus aureus from food and food animals.
Wang X, Meng J, Zhou T, Zhang Y, Yang B, Xi M, Sheng J, Zhi S, Xia X., Foodborne Pathog Dis 9(2), 2012
PMID: 22044289
Highly divergent Staphylococcus aureus isolates from African non-human primates.
Schaumburg F, Alabi AS, Köck R, Mellmann A, Kremsner PG, Boesch C, Becker K, Leendertz FH, Peters G., Environ Microbiol Rep 4(1), 2012
PMID: 23757241
An association between bacterial genotype combined with a high-vancomycin minimum inhibitory concentration and risk of endocarditis in methicillin-resistant Staphylococcus aureus bloodstream infection.
Miller CE, Batra R, Cooper BS, Patel AK, Klein J, Otter JA, Kypraios T, French GL, Tosas O, Edgeworth JD., Clin Infect Dis 54(5), 2012
PMID: 22186774
Toward an understanding of the evolution of Staphylococcus aureus strain USA300 during colonization in community households.
Uhlemann AC, Kennedy AD, Martens C, Porcella SF, Deleo FR, Lowy FD., Genome Biol Evol 4(12), 2012
PMID: 23104992
Differences in methicillin-resistant Staphylococcus aureus strains isolated from pediatric and adult patients from hospitals in a large county in California.
Hudson LO, Murphy CR, Spratt BG, Enright MC, Terpstra L, Gombosev A, Hannah P, Mikhail L, Alexander R, Moore DF, Huang SS., J Clin Microbiol 50(3), 2012
PMID: 22205805
mecA-positive Staphylococcus aureus with low-level oxacillin MIC in Taiwan.
Chen FJ, Huang IW, Wang CH, Chen PC, Wang HY, Lai JF, Shiau YR, Lauderdale TL, TSAR Hospitals., J Clin Microbiol 50(5), 2012
PMID: 22378906
High genetic diversity among community-associated Staphylococcus aureus in Europe: results from a multicenter study.
Rolo J, Miragaia M, Turlej-Rogacka A, Empel J, Bouchami O, Faria NA, Tavares A, Hryniewicz W, Fluit AC, de Lencastre H, CONCORD Working Group., PLoS One 7(4), 2012
PMID: 22558099
Characterization of Staphylococcus aureus strains associated with food poisoning in Shenzhen, China.
Yan X, Wang B, Tao X, Hu Q, Cui Z, Zhang J, Lin Y, You Y, Shi X, Grundmann H., Appl Environ Microbiol 78(18), 2012
PMID: 22798367
Drug-resistant human Staphylococcus aureus in sanctuary apes pose a threat to endangered wild ape populations.
Schaumburg F, Mugisha L, Peck B, Becker K, Gillespie TR, Peters G, Leendertz FH., Am J Primatol 74(12), 2012
PMID: 22907634
Contribution of selected gene mutations to resistance in clinical isolates of vancomycin-intermediate Staphylococcus aureus.
Hafer C, Lin Y, Kornblum J, Lowy FD, Uhlemann AC., Antimicrob Agents Chemother 56(11), 2012
PMID: 22948864
Elevated serum interleukin-10 at time of hospital admission is predictive of mortality in patients with Staphylococcus aureus bacteremia.
Rose WE, Eickhoff JC, Shukla SK, Pantrangi M, Rooijakkers S, Cosgrove SE, Nizet V, Sakoulas G., J Infect Dis 206(10), 2012
PMID: 22966128
Genotyping of skin and soft tissue infection (SSTI)-associated methicillin-resistant Staphylococcus aureus (MRSA) strains among outpatients in a teaching hospital in Japan: application of a phage-open reading frame typing (POT) kit.
Maeda T, Saga T, Miyazaki T, Kouyama Y, Harada S, Iwata M, Yoshizawa S, Kimura S, Ishii Y, Urita Y, Sugimoto M, Yamaguchi K, Tateda K., J Infect Chemother 18(6), 2012
PMID: 23150115
Rise of CC398 lineage of Staphylococcus aureus among Infective endocarditis isolates revealed by two consecutive population-based studies in France.
Tristan A, Rasigade JP, Ruizendaal E, Laurent F, Bes M, Meugnier H, Lina G, Etienne J, Celard M, Tattevin P, Monecke S, Le Moing V, Vandenesch F, French AEPEI study Group on Infective Endocarditis., PLoS One 7(12), 2012
PMID: 23272091
Evidence of multiple virulence subtypes in nosocomial and community-associated MRSA genotypes in companion animals from the upper midwestern and northeastern United States.
Lin Y, Barker E, Kislow J, Kaldhone P, Stemper ME, Pantrangi M, Moore FM, Hall M, Fritsche TR, Novicki T, Foley SL, Shukla SK., Clin Med Res 9(1), 2011
PMID: 20739580
Molecular analysis of community-acquired methicillin-susceptible and resistant Staphylococcus aureus isolates recovered from bacteraemic and osteomyelitis infections in children from Tunisia.
Kechrid A, Pérez-Vázquez M, Smaoui H, Hariga D, Rodríguez-Baños M, Vindel A, Baquero F, Cantón R, Del Campo R., Clin Microbiol Infect 17(7), 2011
PMID: 20977540
Adapting spa typing for national laboratory-based surveillance of methicillin-resistant Staphylococcus aureus.
Vainio A, Koskela S, Virolainen A, Vuopio J, Salmenlinna S., Eur J Clin Microbiol Infect Dis 30(6), 2011
PMID: 21271269
Staphylococcus aureus host range and human-bovine host shift.
Sakwinska O, Giddey M, Moreillon M, Morisset D, Waldvogel A, Moreillon P., Appl Environ Microbiol 77(17), 2011
PMID: 21742927
Adjusted Wallace coefficient as a measure of congruence between typing methods.
Severiano A, Pinto FR, Ramirez M, Carriço JA., J Clin Microbiol 49(11), 2011
PMID: 21918028
Age- and gender-associated Staphylococcus aureus spa types found among nasal carriers in a general population: the Tromso Staph and Skin Study.
Sangvik M, Olsen RS, Olsen K, Simonsen GS, Furberg AS, Sollid JU., J Clin Microbiol 49(12), 2011
PMID: 21998436
Epidemiology, variable genetic organization and regulation of the EDIN-B toxin in Staphylococcus aureus from bacteraemic patients.
Franke GC, Böckenholt A, Sugai M, Rohde H, Aepfelbacher M., Microbiology 156(pt 3), 2010
PMID: 19875439
Emergence of methicillin-resistant Staphylococcus aureus (MRSA) in different animal species.
Cuny C, Friedrich A, Kozytska S, Layer F, Nübel U, Ohlsen K, Strommenger B, Walther B, Wieler L, Witte W., Int J Med Microbiol 300(2-3), 2010
PMID: 20005777
High heterogeneity within methicillin-resistant Staphylococcus aureus ST398 isolates, defined by Cfr9I macrorestriction-pulsed-field gel electrophoresis profiles and spa and SCCmec types.
Argudín MA, Fetsch A, Tenhagen BA, Hammerl JA, Hertwig S, Kowall J, Rodicio MR, Käsbohrer A, Helmuth R, Schroeter A, Mendoza MC, Bräunig J, Appel B, Guerra B., Appl Environ Microbiol 76(3), 2010
PMID: 20023093
Clinical appearance of Staphylococcus aureus spondylodiscitis and molecular characterization of the isolates.
Premru MM, Spik VC, Furlan SL, Zupanc TL., Scand J Infect Dis 42(10), 2010
PMID: 20524787
Panton-Valentine leukocidin-positive Staphylococcus aureus infections in returning travelers.
Tappe D, Schulze MH, Oesterlein A, Turnwald D, Müller A, Vogel U, Stich A., Am J Trop Med Hyg 83(4), 2010
PMID: 20889859
High-throughput typing of Staphylococcus aureus by amplified fragment length polymorphism (AFLP) or multi-locus variable number of tandem repeat analysis (MLVA) reveals consistent strain relatedness.
Melles DC, Schouls L, François P, Herzig S, Verbrugh HA, van Belkum A, Schrenzel J., Eur J Clin Microbiol Infect Dis 28(1), 2009
PMID: 18663501
Spread of invasive Spanish Staphylococcus aureus spa-type t067 associated with a high prevalence of the aminoglycoside-modifying enzyme gene ant(4')-Ia and the efflux pump genes msrA/msrB.
Pérez-Vázquez M, Vindel A, Marcos C, Oteo J, Cuevas O, Trincado P, Bautista V, Grundmann H, Campos J, EARSS Spain spa-typing Group., J Antimicrob Chemother 63(1), 2009
PMID: 18948410
Cross-border comparison of the admission prevalence and clonal structure of meticillin-resistant Staphylococcus aureus.
Köck R, Brakensiek L, Mellmann A, Kipp F, Henderikx M, Harmsen D, Daniels-Haardt I, von Eiff C, Becker K, Hendrix MG, Friedrich AW., J Hosp Infect 71(4), 2009
PMID: 19201056
Genetic determinants of resistance to fusidic acid among clinical bacteremia isolates of Staphylococcus aureus.
Lannergård J, Norström T, Hughes D., Antimicrob Agents Chemother 53(5), 2009
PMID: 19289529
Methicillin-resistant Staphylococcus aureus in Spain: molecular epidemiology and utility of different typing methods.
Vindel A, Cuevas O, Cercenado E, Marcos C, Bautista V, Castellares C, Trincado P, Boquete T, Pérez-Vázquez M, Marín M, Bouza E, Spanish Group for the Study of Staphylococcus., J Clin Microbiol 47(6), 2009
PMID: 19339473
Multiple-locus variable number tandem repeat analysis of Staphylococcus aureus: comparison with pulsed-field gel electrophoresis and spa-typing.
Schouls LM, Spalburg EC, van Luit M, Huijsdens XW, Pluister GN, van Santen-Verheuvel MG, van der Heide HG, Grundmann H, Heck ME, de Neeling AJ., PLoS One 4(4), 2009
PMID: 19343175
Non-spa-typeable clinical Staphylococcus aureus strains are naturally occurring protein A mutants.
Baum C, Haslinger-Löffler B, Westh H, Boye K, Peters G, Neumann C, Kahl BC., J Clin Microbiol 47(11), 2009
PMID: 19759222
The Staphylococcus aureus lineage-specific markers collagen adhesin and toxic shock syndrome toxin 1 distinguish multilocus sequence typing clonal complexes within spa clonal complexes.
Deurenberg RH, Rijnders MI, Sebastian S, Welling MA, Beisser PS, Stobberingh EE., Diagn Microbiol Infect Dis 65(2), 2009
PMID: 19748421
spa Typing of Staphylococcus aureus as a frontline tool in epidemiological typing.
Strommenger B, Braulke C, Heuck D, Schmidt C, Pasemann B, Nübel U, Witte W., J Clin Microbiol 46(2), 2008
PMID: 18032612
Molecular characterization of Staphylococcus aureus bloodstream isolates collected in a Dutch University Hospital between 1999 and 2006.
Nulens E, Stobberingh EE, van Dessel H, Sebastian S, van Tiel FH, Beisser PS, Deurenberg RH., J Clin Microbiol 46(7), 2008
PMID: 18463215
Characterization of clonal relatedness among the natural population of Staphylococcus aureus strains by using spa sequence typing and the BURP (based upon repeat patterns) algorithm.
Mellmann A, Weniger T, Berssenbrügge C, Keckevoet U, Friedrich AW, Harmsen D, Grundmann H., J Clin Microbiol 46(8), 2008
PMID: 18524961
A preliminary guideline for the assignment of methicillin-resistant Staphylococcus aureus to a Canadian pulsed-field gel electrophoresis epidemic type using spa typing.
Golding GR, Campbell JL, Spreitzer DJ, Veyhl J, Surynicz K, Simor A, Mulvey MR, Canadian Nosocomial Infection Surveillance Program., Can J Infect Dis Med Microbiol 19(4), 2008
PMID: 19436507
The evolution of Staphylococcus aureus.
Deurenberg RH, Stobberingh EE., Infect Genet Evol 8(6), 2008
PMID: 18718557
Clusters of infections in horses with MRSA ST1, ST254, and ST398 in a veterinary hospital.
Cuny C, Strommenger B, Witte W, Stanek C., Microb Drug Resist 14(4), 2008
PMID: 19025385

18 References

Daten bereitgestellt von Europe PubMed Central.

How clonal is Staphylococcus aureus?
Feil EJ, Cooper JE, Grundmann H, Robinson DA, Enright MC, Berendt T, Peacock SJ, Smith JM, Murphy M, Spratt BG, Moore CE, Day NP., J. Bacteriol. 185(11), 2003
PMID: 12754228
spa typing method for discriminating among Staphylococcus aureus isolates: implications for use of a single marker to detect genetic micro- and macrovariation.
Koreen L, Ramaswamy SV, Graviss EA, Naidich S, Musser JM, Kreiswirth BN., J. Clin. Microbiol. 42(2), 2004
PMID: 14766855
High interlaboratory reproducibility of DNA sequence-based typing of bacteria in a multicenter study.
Aires-de-Sousa M, Boye K, de Lencastre H, Deplano A, Enright MC, Etienne J, Friedrich A, Harmsen D, Holmes A, Huijsdens XW, Kearns AM, Mellmann A, Meugnier H, Rasheed JK, Spalburg E, Strommenger B, Struelens MJ, Tenover FC, Thomas J, Vogel U, Westh H, Xu J, Witte W., J. Clin. Microbiol. 44(2), 2006
PMID: 16455927
Evaluation of protein A gene polymorphic region DNA sequencing for typing of Staphylococcus aureus strains.
Shopsin B, Gomez M, Montgomery SO, Smith DH, Waddington M, Dodge DE, Bost DA, Riehman M, Naidich S, Kreiswirth BN., J. Clin. Microbiol. 37(11), 1999
PMID: 10523551
Comparing tandem repeats with duplications and excisions of variable degree.
Sammeth M, Stoye J., IEEE/ACM Trans Comput Biol Bioinform 3(4), 2006
PMID: 17085848
Ridom SpaServer
AUTHOR UNKNOWN, 0
Multilocus sequence typing for characterization of methicillin-resistant and methicillin-susceptible clones of Staphylococcus aureus.
Enright MC, Day NP, Davies CE, Peacock SJ, Spratt BG., J. Clin. Microbiol. 38(3), 2000
PMID: 10698988
Typing of methicillin-resistant Staphylococcus aureus in a university hospital setting by using novel software for spa repeat determination and database management.
Harmsen D, Claus H, Witte W, Rothganger J, Claus H, Turnwald D, Vogel U., J. Clin. Microbiol. 41(12), 2003
PMID: 14662923
The IS1167 insertion sequence is a phylogenetically informative marker among isolates of serotype 6B Streptococcus pneumoniae.
Robinson DA, Hollingshead SK, Musser JM, Parkinson AJ, Briles DE, Crain MJ., J. Mol. Evol. 47(2), 1998
PMID: 9694671
Short-sequence DNA repeats in prokaryotic genomes.
van Belkum A, Scherer S, van Alphen L, Verbrugh H., Microbiol. Mol. Biol. Rev. 62(2), 1998
PMID: 9618442
Assignment of Staphylococcus isolates to groups by spa typing, SmaI macrorestriction analysis, and multilocus sequence typing.
Strommenger B, Kettlitz C, Weniger T, Harmsen D, Friedrich AW, Witte W., J. Clin. Microbiol. 44(7), 2006
PMID: 16825376
Automated DNA sequence-based early warning system for the detection of methicillin-resistant Staphylococcus aureus outbreaks.
Mellmann A, Friedrich AW, Rosenkotter N, Rothganger J, Karch H, Reintjes R, Harmsen D., PLoS Med. 3(3), 2006
PMID: 16396609
Evolutionary models of the emergence of methicillin-resistant Staphylococcus aureus.
Robinson DA, Enright MC., Antimicrob. Agents Chemother. 47(12), 2003
PMID: 14638503

Export

Markieren/ Markierung löschen
Markierte Publikationen

Open Data PUB

Web of Science

Dieser Datensatz im Web of Science®

Quellen

PMID: 17967176
PubMed | Europe PMC

Suchen in

Google Scholar