72 Publikationen
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2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2957996Wibberg D, Genzel F, Verwaaijen B, Blom J, Rupp O, Goesmann A, Zrenner R, Grosch R, Pühler A, Schlüter A (2021)PUB | PDF | DOI | WoS | PubMed | Europe PMC
Genome Analyses of the Less Aggressive Rhizoctonia solani AG1-IB Isolates 1/2/21 and O8/2 Compared to the Reference AG1-IB Isolate 7/3/14.
Journal of Fungi 7(10): 832. -
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2906720Nguyen TV, Wibberg D, Battenberg K, Blom J, Vanden Heuvel B, Berry AM, Kalinowski J, Pawlowski K (2016)PUB | DOI | WoS | PubMed | Europe PMC
An assemblage of Frankia Cluster II strains from California contains the canonical nod genes and also the sulfotransferase gene nodH.
BMC Genomics 17(1): 796. -
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2904976Blifernez-Klassen O, Wibberg D, Winkler A, Blom J, Goesmann A, Kalinowski J, Kruse O (2016)PUB | PDF | DOI | WoS | PubMed | Europe PMC
Complete Chloroplast and Mitochondrial Genome Sequences of the Hydrocarbon Oil-Producing Green MicroalgaBotryococcus brauniiRace B (Showa).
Genome Announcements 4(3): e00524-16. -
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2731279Huja S, Oren Y, Trost E, Brzuszkiewicz E, Biran D, Blom J, Goesmann A, Gottschalk G, Hacker J, Ron EZ, Dobrindt U (2015)PUB | DOI | WoS | PubMed | Europe PMC
Genomic Avenue to Avian Colisepticemia.
mBio 6(1): e01681-14. -
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2761035Arnold M, Wibberg D, Blom J, Schatschneider S, Winkler A, Kutter Y, Rückert C, Albersmeier A, Albaum S, Goesmann A, Zange S, Heesemann J, Pühler A, Hogardt M, Vorhölter F-J (2015)PUB | DOI | WoS | PubMed | Europe PMC
Draft Genome Sequence of Pseudomonas aeruginosa Strain WS136, a Highly Cytotoxic ExoS-Positive Wound Isolate Recovered from Pyoderma Gangrenosum.
Genome announcements 3(4): e00680-15. -
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2651944Tielen P, Wibberg D, Blom J, Rosin N, Meyer A-K, Bunk B, Schobert M, Tüpker R, Schatschneider S, Rückert C, Albersmeier A, Goesmann A, Vorhölter F-J, Jahn D, Pühler A (2014)PUB | DOI | PubMed | Europe PMC
Genome Sequence of the Small-Colony Variant Pseudomonas aeruginosa MH27, Isolated from a Chronic Urethral Catheter Infection.
Genome announcements 2(1). -
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2658539Smits THM, Guerrero-Prieto VM, Hernández-Escarcega G, Blom J, Goesmann A, Rezzonico F, Duffy B, Stockwell VO (2014)PUB | DOI | PubMed | Europe PMC
Whole-Genome Sequencing of Erwinia amylovora Strains from Mexico Detects Single Nucleotide Polymorphisms in rpsL Conferring Streptomycin Resistance and in the avrRpt2 Effector Altering Host Interactions.
Genome announcements 2(1). -
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2672926Wibberg D, Tielen P, Blom J, Rosin N, Schobert M, Tüpker R, Schatschneider S, Spilker D, Albersmeier A, Goesmann A, Vorhölter F-J, Pühler A, Jahn D (2014)PUB | PDF | DOI | PubMed | Europe PMC
Genome Sequence of the Acute Urethral Catheter Isolate Pseudomonas aeruginosa MH38.
Genome announcements 2(2): e00161-14. -
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2582332Guimarães LC, Soares SC, Albersmeier A, Blom J, Jaenicke S, Azevedo V, Soriano F, Tauch A, Trost E (2013)PUB | DOI | PubMed | Europe PMC
Complete Genome Sequence of Corynebacterium urealyticum Strain DSM 7111, Isolated from a 9-Year-Old Patient with Alkaline-Encrusted Cystitis.
Genome announcements 1(3): e00264-13. -
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2552500Soares SC, Silva A, Trost E, Blom J, Ramos R, Carneiro A, Ali A, Santos AR, Pinto AC, Diniz C, Barbosa EGV, Dorella FA, Aburjaile F, Rocha FS, Nascimento KKF, Guimares LC, Almeida S, Hassan SS, Bakhtiar SM, Pereira UP, Abreu VAC, Schneider MPC, Miyoshi A, Tauch A, Azevedo V (2013)PUB | DOI | WoS | PubMed | Europe PMC
The Pan-Genome of the Animal Pathogen Corynebacterium pseudotuberculosis Reveals Differences in Genome Plasticity between the Biovar ovis and equi Strains.
PLoS ONE 8(1): e53818. -
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2635520Dam B, Dam S, Blom J, Liesack W (2013)PUB | DOI | WoS | PubMed | Europe PMC
Genome Analysis Coupled with Physiological Studies Reveals a Diverse Nitrogen Metabolism in Methylocystis sp Strain SC2.
Plos One 8(10): e74767. -
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2637220Wu H, Qiao J, Blom J, Rückert C, Reva O, Gao X, Borriss R (2013)PUB | DOI | PubMed | Europe PMC
The Rhizobacterium Bacillus amyloliquefaciens subsp. plantarum NAU-B3 Contains a Large Inversion within the Central Portion of the Genome.
Genome announcements 1(6): e00941-13. -
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2607974Niu B, Vater J, Rückert C, Blom J, Lehmann M, Ru J-J, Chen X-H, Wang Q, Borriss R (2013)PUB | DOI | WoS | PubMed | Europe PMC
Polymyxin P is the active principle in suppressing phytopathogenic Erwinia spp. by the biocontrol rhizobacterium Paenibacillus polymyxa M-1.
BMC microbiology 13(1): 137. -
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2555342He P, Hao K, Blom J, Rückert C, Vater J, Mao Z, Wu Y, Hou M, He P, He Y, Borriss R (2013)PUB | DOI | WoS | PubMed | Europe PMC
Genome sequence of the plant growth promoting strain Bacillus amyloliquefaciens subsp. plantarum B9601-Y2 and expression of mersacidin and other secondary metabolites.
Journal of biotechnology 164(2): 281-291. -
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2602756Smits THM, Rezzonico F, López MM, Blom J, Goesmann A, Frey JE, Duffy B (2013)PUB | DOI | WoS | PubMed | Europe PMC
Phylogenetic position and virulence apparatus of the pear flower necrosis pathogen Erwinia piriflorinigrans CFBP 5888(T) as assessed by comparative genomics.
Systematic and applied microbiology 36(7): 449-456. -
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2633427Wibberg D, Blom J, Rückert C, Winkler A, Albersmeier A, Pühler A, Schlüter A, Scharf BE (2013)PUB | DOI | WoS | PubMed | Europe PMC
Draft Genome Sequence of Sinorhizobium meliloti RU11/001, a model organism for flagellum structure, motility and chemotaxis.
Journal of Biotechnology 168(4): 731-733. -
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2622238Barbe S, Llop P, Blom J, Cabrefiga J, Goesmann A, Duffy B, Montesinos E, Smits THM, Lopez MM (2013)PUB | DOI | WoS
Complete sequence of Erwinia piriflorinigrans plasmids pEPIR37 and pEPIR5 and role of pEPIR37 in pathogen virulence.
Plant Pathology 62(4): 786-798. -
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2558460Roetzer A, Diel R, Kohl TA, Rückert C, Nübel U, Blom J, Wirth T, Jaenicke S, Schuback S, Rüsch-Gerdes S, Supply P, Kalinowski J, Niemann S (2013)PUB | DOI | WoS | PubMed | Europe PMC
Whole Genome Sequencing versus Traditional Genotyping for Investigation of a Mycobacterium tuberculosis Outbreak: A Longitudinal Molecular Epidemiological Study.
PLoS medicine 10(2): e1001387. -
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2576539Wichmann F, Vorhölter F-J, Hersemann L, Widmer F, Blom J, Niehaus K, Reinhard S, Conradin C, Kölliker R (2013)PUB | DOI | WoS | PubMed | Europe PMC
The noncanonical type III secretion system of Xanthomonas translucens pv. graminis is essential for forage grass infection.
Molecular plant pathology 14(6): 576-588. -
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2635526Koeck DE, Wibberg D, Koellmeier T, Blom J, Jaenicke S, Winkler A, Albersmeier A, Zverlov VV, Pühler A, Schwarz WH, Schlüter A (2013)PUB | DOI | WoS | PubMed | Europe PMC
Draft genome sequence of the cellulolytic Clostridium thermocellum wild-type strain BC1 playing a role in cellulosic biomass degradation.
Journal of Biotechnology 168(1): 62-63. -
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2557938Mann RA, Smits THM, Bühlmann A, Blom J, Goesmann A, Frey JE, Plummer KM, Beer SV, Luck J, Duffy B, Rodoni B (2013)PUB | DOI | WoS | PubMed | Europe PMC
Comparative Genomics of 12 Strains of Erwinia amylovora Identifies a Pan-Genome with a Large Conserved Core.
PLOS ONE 8(2): e55644. -
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2548286Luque-Almagro VM, Acera F, Igeño MI, Wibberg D, Roldán MD, Sáez LP, Hennig M, Quesada A, Huertas MJ, Blom J, Merchán F, Escribano MP, Jaenicke S, Estepa J, Guijo MI, Martínez-Luque M, Macías D, Szczepanowski R, Becerra G, Ramirez S, Carmona MI, Gutiérrez O, Manso I, Pühler A, Castillo F, Moreno-Vivián C, Schlüter A, Blasco R (2013)PUB | DOI | WoS | PubMed | Europe PMC
Draft whole genome sequence of the cyanide-degrading bacterium Pseudomonas pseudoalcaligenes CECT5344.
Environmental Microbiology 15(1): 253-270. -
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2553455De Maayer P, Chan W-Y, Blom J, Venter SN, Duffy B, Smits THM, Coutinho TA (2012)PUB | DOI | WoS | PubMed | Europe PMC
The large universal Pantoea plasmid LPP-1 plays a major role in biological and ecological diversification.
Bmc Genomics 13(1): 625. -
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2498160Schröder J, Maus I, Meyer K, Wördemann S, Blom J, Jaenicke S, Schneider J, Trost E, Tauch A (2012)PUB | PDF | DOI | WoS | PubMed | Europe PMC
Complete genome sequence, lifestyle, and multi-drug resistance of the human pathogen Corynebacterium resistens DSM 45100 isolated from blood samples of a leukemia patient.
BMC Genomics 13(1): 141. -
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2513347Trost E, Blom J, de Castro Soares S, Huang I-H, Al-Dilaimi A, Schröder J, Jaenicke S, Dorella FA, Rocha FS, Miyoshi A, Azevedo V, Schneider MP, Silva A, Camello TC, Sabbadini PS, Santos CS, Santos LS, Hirata RJ, Mattos-Guaraldi AL, Efstratiou A, Schmitt MP, Ton-That H, Tauch A (2012)PUB | DOI | WoS | PubMed | Europe PMC
Pangenomic Study of Corynebacterium diphtheriae That Provides Insights into the Genomic Diversity of Pathogenic Isolates from Cases of Classical Diphtheria, Endocarditis, and Pneumonia.
Journal of bacteriology 194(12): 3199-3215. -
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2490949Zschuttig A, Zimmermann K, Blom J, Goesmann A, Pohlmann C, Gunzer F (2012)PUB | DOI | WoS | PubMed | Europe PMC
Identification and Characterization of Microcin S, a New Antibacterial Peptide Produced by Probiotic Escherichia coli G3/10.
PLoS ONE 7(3): e33351. -
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2530221Jankowitsch F, Schwarz J, Rückert C, Gust B, Szczepanowski R, Blom J, Pelzer S, Kalinowski J, Mack M (2012)PUB | DOI | WoS | PubMed | Europe PMC
The genome sequence of the bacterium Streptomyces davawensis JCM 4913 and heterologous production of the unique antibiotic roseoflavin.
Journal of bacteriology 194(24): 6818-6827. -
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2527519Ruijter JM, Pfaffl MW, Zhao S, Spiess AN, Boggy G, Blom J, Rutledge RG, Sisti D, Lievens A, De Preter K, Derveaux S, Hellemans J, Vandesompele J (2012)PUB | DOI | WoS | PubMed | Europe PMC
Evaluation of qPCR curve analysis methods for reliable biomarker discovery: Bias, resolution, precision, and implications.
Methods. A companion to methods in enzymology (San Diego, Calif.) 59(1): 32-46. -
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2490535Heinl S, Wibberg D, Eikmeyer FG, Szczepanowski R, Blom J, Linke B, Goesmann A, Grabherr R, Schwab H, Pühler A, Schlüter A (2012)PUB | DOI | WoS | PubMed | Europe PMC
Insights into the completely annotated genome of Lactobacillus buchneri CD034, a strain isolated from stable grass silage.
Journal of Biotechnology 161(2): 153-166. -
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2513256Filippini M, Qi W, Blom J, Goesmann A, Smits THM, Bagheri HC (2012)PUB | DOI | WoS | PubMed | Europe PMC
Genome Sequence of Fibrella aestuarina BUZ 2T, a Filamentous Marine Bacterium.
Journal of bacteriology 194(13): 3555. -
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2487853Brankatschk K, Blom J, Goesmann A, Smits THM, Duffy B (2012)PUB | DOI | WoS | PubMed | Europe PMC
Comparative genomic analysis of Salmonella enterica subsp. enterica serovar Weltevreden foodborne strains with other serovars.
International journal of food microbiology 155(3): 247-256. -
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2486204Blom J, Rückert C, Niu B, Wang Q, Borriss R (2012)PUB | DOI | WoS | PubMed | Europe PMC
The Complete Genome of Bacillus amyloliquefaciens subsp. plantarum CAU B946 Contains a Gene Cluster for Nonribosomal Synthesis of Iturin A.
Journal of bacteriology 194(7): 1845-1846. -
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2544774Schneider J, Andrea H, Blom J, Jaenicke S, Rückert C, Schorsch C, Szczepanowski R, Farwick M, Goesmann A, Pühler A, Schaffer S, Tauch A, Köhler T, Brinkrolf K (2012)PUB | DOI | WoS | PubMed | Europe PMC
Draft Genome Sequence of Wickerhamomyces ciferrii NRRL Y-1031 F-60-10.
Eukaryotic Cell 11(12): 1582-1583. -
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2501081De Maayer P, Chan WY, Rezzonico F, Bühlmann A, Venter SN, Blom J, Goesmann A, Frey JE, Smits THM, Duffy B, Coutinho TA (2012)PUB | DOI | WoS | PubMed | Europe PMC | GenBank
Complete genome sequence of clinical isolate Pantoea ananatis LMG 5342.
Journal of Bacteriology 194(6): 1615-1616. -
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2542210Parreira VR, Costa M, Eikmeyer FG, Blom J, Prescott JF (2012)PUB | DOI | WoS | PubMed | Europe PMC
Sequence of Two Plasmids from Clostridium perfringens Chicken Necrotic Enteritis Isolates and Comparison with C. perfringens Conjugative Plasmids.
PLoS ONE 7(11): e49753. -
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2526269Strobel T, Al-Dilaimi A, Blom J, Gessner A, Kalinowski J, Luzhetska M, Pühler A, Szczepanowski R, Bechthold A, Rückert C (2012)PUB | PDF | DOI | WoS | PubMed | Europe PMC
Complete genome sequence of Saccharothrix espanaensis DSM 44229T and comparison to the other completely sequenced Pseudonocardiaceae.
BMC Genomics 13(1): 465. -
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2529610Schork S, Schlüter A, Blom J, Schneiker-Bekel S, Pühler A, Goesmann A, Frosch M, Schoen C (2012)PUB | DOI | WoS | PubMed | Europe PMC
Genome Sequence of a Neisseria meningitidis Capsule Null Locus Strain from the Clonal Complex of Sequence Type 198.
Journal of Bacteriology 194(18): 5144-5145. -
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2526281Zischka M, Kuenne C, Blom J, Dabrowski PW, Linke B, Hain T, Nitsche A, Goesmann A, Larsen J, Jensen LB, Witte W, Werner G (2012)PUB | DOI | WoS | PubMed | Europe PMC
Complete Genome Sequence of the Porcine Isolate Enterococcus faecalis D32.
Journal of Bacteriology 194(19): 5490-5491. -
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2526298Maus I, Wibberg D, Stantscheff R, Eikmeyer FG, Seffner A, Boelter J, Szczepanowski R, Blom J, Jaenicke S, König H, Pühler A, Schlüter A (2012)PUB | DOI | WoS | PubMed | Europe PMC
Complete Genome Sequence of the Hydrogenotrophic, Methanogenic Archaeon Methanoculleus bourgensis Strain MS2T, Isolated from a Sewage Sludge Digester.
Journal of Bacteriology 194(19): 5487-5488. -
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2502106Hao K, He P, Blom J, Rückert C, Mao Z, Wu Y, He Y, Borriss R (2012)PUB | DOI | WoS | PubMed | Europe PMC
The Genome of Plant Growth-Promoting Bacillus amyloliquefaciens subsp. plantarum Strain YAU B9601-Y2 Contains a Gene Cluster for Mersacidin Synthesis.
Journal of bacteriology 194(12): 3264-3265. -
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2500946Mann RA, Blom J, Bühlmann A, Plummer KM, Beer SV, Luck JE, Goesmann A, Frey JE, Rodoni BC, Duffy B, Smits THM (2012)PUB | DOI | WoS | PubMed | Europe PMC
Comparative analysis of the Hrp pathogenicity island of Rubus- and Spiraeoideae-infecting Erwinia amylovora strains identifies the IT region as a remnant of an integrative conjugative element.
Gene 504(1): 6-12. -
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2394493Hinse D, Vollmer T, Rückert C, Blom J, Kalinowski J, Knabbe C, Dreier J (2011)PUB | DOI | WoS | PubMed | Europe PMC
Complete genome and comparative analysis of Streptococcus gallolyticus subsp gallolyticus, an emerging pathogen of infective endocarditis.
BMC Genomics 12(1): 400. -
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2093398Brankatschk K, Blom J, Goesmann A, Smits THM, Duffy B (2011)PUB | DOI | WoS | PubMed | Europe PMC
Genome of a European Fresh-Vegetable Food Safety Outbreak Strain of Salmonella enterica subsp enterica Serovar Weltevreden.
Journal of Bacteriology 193(8): 2066. -
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2375634Pothier JF, Vorhölter F-J, Blom J, Goesmann A, Pühler A, Smits TH, Duffy B (2011)PUB | DOI | WoS | PubMed | Europe PMC
The ubiquitous plasmid pXap41 in the invasive phytopathogen Xanthomonas arboricola pv. pruni: complete sequence and comparative genomic analysis.
FEMS Microbiology Letters 323(1): 52-60. -
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2404767Niu B, Rückert C, Blom J, Wang Q, Borriss R (2011)PUB | DOI | Download (ext.) | WoS | PubMed | Europe PMC
The Genome of the Plant Growth-Promoting Rhizobacterium Paenibacillus polymyxa M-1 Contains Nine Sites Dedicated to Nonribosomal Synthesis of Lipopeptides and Polyketides.
Journal of Bacteriology 193(20): 5862-5863. -
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2354731Wibberg D, Blom J, Jaenicke S, Kollin F, Rupp O, Scharf B, Schneiker-Bekel S, Szczepanowski R, Goesmann A, Setubal JC, Schmitt R, Pühler A, Schlüter A (2011)PUB | DOI | WoS | PubMed | Europe PMC
Complete genome sequencing of Agrobacterium sp. H13-3, the former Rhizobium lupini H13-3, reveals a tripartite genome consisting of a circular and a linear chromosome and an accessory plasmid but lacking a tumor-inducing Ti-plasmid.
Journal of Biotechnology 155(1): 50-62. -
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2326511Rückert C, Blom J, Chen XH, Reva O, Borriss R (2011)PUB | DOI | WoS | PubMed | Europe PMC
Genome sequence of B. amyloliquefaciens type strain DSM7(T) reveals differences to plant-associated B. amyloliquefaciens FZB42.
Journal of Biotechnology 155(1): 78-85. -
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2375954Borriss R, Chen X-H, Rückert C, Blom J, Becker A, Baumgarth B, Fan B, Pukall R, Schumann P, Sproer C, Junge H, Vater J, Pühler A, Klenk H-P (2011)PUB | DOI | WoS | PubMed | Europe PMC
Relationship of Bacillus amyloliquefaciens clades associated with strains DSM 7T and FZB42T: a proposal for Bacillus amyloliquefaciens subsp. amyloliquefaciens subsp. nov. and Bacillus amyloliquefaciens subsp. plantarum subsp. nov. based on complete genome sequence comparisons.
Int J Syst Evol Microbiol 61(8): 1786-1801. -
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2472468Llop P, Cabrefiga J, Smits THM, Dreo T, Barbé S, Pulawska J, Bultreys A, Blom J, Duffy B, Montesinos E, Lopez MM (2011)PUB | DOI | WoS | PubMed | Europe PMC
Erwinia amylovora novel plasmid pEI70: Complete sequence, biogeography, and role in aggressiveness in the fire blight phytopathogen.
PLoS one 6(12): e28651. -
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2326445Schneider J, Blom J, Jaenicke S, Linke B, Brinkrolf K, Neuweger H, Tauch A, Goesmann A (2011)PUB | DOI | WoS | PubMed | Europe PMC
RAPYD - Rapid Annotation Platform for Yeast Data.
Journal of Biotechnology 155(1): 118-126. -
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2307104Smits THM, Rezzonico F, Kamber T, Blom J, Goesmann A, Ishimaru CA, Frey JE, Stockwell VO, Duffy B (2011)PUB | DOI | WoS | PubMed | Europe PMC
Metabolic Versatility and Antibacterial Metabolite Biosynthesis Are Distinguishing Genomic Features of the Fire Blight Antagonist Pantoea vagans C9-1.
PLoS ONE 6(7): e22247. -
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2326455Krol E, Blom J, Winnebald J, Berhoerster A, Barnett MJ, Goesmann A, Baumbach J, Becker A (2011)PUB | DOI | WoS | PubMed | Europe PMC
RhizoRegNet-A database of rhizobial transcription factors and regulatory networks.
Journal of Biotechnology 155(1): 127-134. -
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2326518Szczepanowski R, Eikmeyer FG, Harfmann J, Blom J, Rogers LM, Top EM, Schlüter A (2011)PUB | DOI | WoS | PubMed | Europe PMC
Sequencing and comparative analysis of IncP-1 alpha antibiotic resistance plasmids reveal a highly conserved backbone and differences within accessory regions.
Journal of Biotechnology 155(1): 95-103. -
2011 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2382565Borriss R, Rückert C, Blom J, Bezuidt O, Reva O, Klenk HP (2011)PUB | DOI | WoS
Whole Genome Sequence Comparisons in Taxonomy.
In: Taxonomy of Prokaryotes (Methods in Microbiology). Rainey F, Oren A (Eds); Methods in microbiology, 38. Waltham, MA, USA: Academic Press,: 473. -
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2290032Joseph B, Schwarz RF, Linke B, Blom J, Becker A, Claus H, Goesmann A, Frosch M, Mueller T, Vogel U, Schoen C (2011)PUB | DOI | WoS | PubMed | Europe PMC
Virulence Evolution of the Human Pathogen Neisseria meningitidis by Recombination in the Core and Accessory Genome.
PLoS ONE 6(4): e18441. -
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2093389Schoen C, Weber-Lehmann J, Blom J, Joseph B, Goesmann A, Strittmatter A, Frosch M (2011)PUB | DOI | WoS | PubMed | Europe PMC
Whole-Genome Sequence of the Transformable Neisseria meningitidis Serogroup A Strain WUE2594.
Journal of Bacteriology 193(8): 2064-2065. -
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2289952Blom J, Jakobi T, Doppmeier D, Jaenicke S, Kalinowski J, Stoye J, Goesmann A (2011)PUB | DOI | WoS | PubMed | Europe PMC
Exact and complete short-read alignment to microbial genomes using Graphics Processing Unit programming.
Bioinformatics 27(10): 1351-1358. -
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2289928Kant R, Blom J, Palva A, Siezen RJ, de Vos WM (2011)PUB | DOI | WoS | PubMed | Europe PMC
Comparative genomics of Lactobacillus.
Microbial Biotechnology 4(3): 323-332. -
2011 | Zeitschriftenaufsatz | Im Druck | PUB-ID: 2017892Schneiker-Bekel S, Wibberg D, Bekel T, Blom J, Linke B, Neuweger H, Stiens M, Vorhölter F-J, Weidner S, Goesmann A, Pühler A, Schlüter A (In Press)PUB | DOI | WoS | PubMed | Europe PMC
The complete genome sequence of the dominant Sinorhizobium meliloti field isolate SM11 extends the S. meliloti pan-genome.
Journal of Biotechnology 155(1): 20-33. -
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2087955Hackl M, Jakobi T, Blom J, Doppmeier D, Brinkrolf K, Szczepanowski R, Bernhart SH, Höner zu Siederdissen C, Bort JAH, Wieser M, Kunert R, Jeffs S, Hofacker IL, Goesmann A, Pühler A, Borth N, Grillari J (2011)PUB | DOI | WoS | PubMed | Europe PMC
Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering.
Journal of Biotechnology 153(1-2): 62-75. -
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2036058Margaret I, Becker A, Blom J, Bonilla I, Goesmann A, Göttfert M, Lloret J, Mittard-Runte V, Rückert C, Ruiz-Sainz J-E, Vinardell JM, Weidner S (2011)PUB | DOI | WoS | PubMed | Europe PMC
Symbiotic properties and first analyses of the genomic sequence of the fast growing model strain Sinorhizobium fredii HH103 nodulating soybean.
Journal of Biotechnology 155(1): 11-19. -
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2003418Powney R, Smits THM, Sawbridge T, Frey B, Blom J, Frey JE, Plummer KM, Beer SV, Luck J, Duffy B, Rodoni B (2011)PUB | DOI | WoS | PubMed | Europe PMC
Genome Sequence of an Erwinia amylovora Strain with Pathogenicity Restricted to Rubus Plants.
Journal of Bacteriology 193(3): 785-786. -
2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1929692Schneider J, Vorhölter F-J, Trost E, Blom J, Musa YR, Neuweger H, Niehaus K, Schatschneider S, Tauch A, Goesmann A (2010)PUB | DOI | WoS | PubMed | Europe PMC
CARMEN - Comparative Analysis and in silico Reconstruction of organism-specific MEtabolic Networks.
Genetics and Molecular Research 9(3): 1660-1672. -
2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1785275Trost E, Götker S, Schneider J, Schneiker-Bekel S, Szczepanowski R, Tilker A, Viehöver P, Arnold W, Bekel T, Blom J, Gartemann K-H, Linke B, Goesmann A, Pühler A, Shukla SK, Tauch A (2010)PUB | PDF | DOI | WoS | PubMed | Europe PMC
Complete genome sequence and lifestyle of black-pigmented Corynebacterium aurimucosum ATCC 700975 (formerly C. nigricans CN-1) isolated from a vaginal swab of a woman with spontaneous abortion.
BMC Genomics 11(1): 91. -
2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1796445Smits THM, Rezzonico F, Kamber T, Blom J, Goesmann A, Frey JE, Duffy B (2010)PUB | DOI | WoS | PubMed | Europe PMC
Complete Genome Sequence of the Fire Blight Pathogen Erwinia amylovora CFBP 1430 and Comparison to Other Erwinia spp.
MOLECULAR PLANT-MICROBE INTERACTIONS 23(4): 384-393. -
2010 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 1894907Mittard-Runte V, Bekel T, Blom J, Dondrup M, Henckel K, Jaenicke S, Krause L, Linke B, Neuweger H, Schneiker-Bekel S, Goesmann A (2010)PUB | DOI
Practical Guide: Genomic Techniques and How to Apply Them to Marine Questions.
In: Introduction to Marine Genomics (Advances in Marine Genomics). Cock JM, Tessmar-Raible K, Boyen C, Viard F (Eds);1. Netherlands: Springer Netherlands: 315-396. -
2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1930110Joseph B, Schneiker-Bekel S, Schramm-Glueck A, Blom J, Claus H, Linke B, Schwarz RF, Becker A, Goesmann A, Frosch M, Schoen C (2010)PUB | DOI | WoS | PubMed | Europe PMC
Comparative Genome Biology of a Serogroup B Carriage and Disease Strain Supports a Polygenic Nature of Meningococcal Virulence.
JOURNAL OF BACTERIOLOGY 192(20): 5363-5377. -
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1783187Blom J, Albaum S, Doppmeier D, Pühler A, Vorhölter F-J, Zakrzewski M, Goesmann A (2009)PUB | PDF | DOI | WoS | PubMed | Europe PMC
EDGAR: a software framework for the comparative analysis of prokaryotic genomes.
BMC Bioinformatics 10(1): 154. -
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1592257Schoen C, Blom J, Claus H, Schramm-Glueck A, Brandt P, Mueller T, Goesmann A, Joseph B, Konietzny S, Kurzai O, Schmitt C, Friedrich T, Linke B, Vogel U, Frosch M (2008)PUB | DOI | WoS | PubMed | Europe PMC | GenBank
Whole-genome comparison of disease and carriage strains provides insights into virulence evolution in Neisseria meningitidis.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 105(9): 3473-3478. -
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1585939Tauch A, Schneider J, Szczepanowski R, Tilker A, Viehöver P, Gartemann K-H, Arnold W, Blom J, Brinkrolf K, Brune I, Goetker S, Weisshaar B, Goesmann A, Droege M, Pühler A (2008)PUB | DOI | WoS | PubMed | Europe PMC
Ultrafast pyrosequencing of Corynebacterium kroppenstedtii DSM44385 revealed insights into the physiology of a lipophilic corynebacterium that lacks mycolic acids.
Journal of Biotechnology 136(1-2): 22-30.