72 Publikationen

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  • [72]
    2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2957996 OA
    Wibberg, D., Genzel, F., Verwaaijen, B., Blom, J., Rupp, O., Goesmann, A., Zrenner, R., Grosch, R., Pühler, A., Schlüter, A.: Genome Analyses of the Less Aggressive Rhizoctonia solani AG1-IB Isolates 1/2/21 and O8/2 Compared to the Reference AG1-IB Isolate 7/3/14. Journal of Fungi. 7, : 832 (2021).
    PUB | PDF | DOI | WoS | PubMed | Europe PMC
     
  • [71]
    2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2909153 OA
    Yu, J., Blom, J., Sczyrba, A., Goesmann, A.: Rapid protein alignment in the cloud: HAMOND combines fast DIAMOND alignments with Hadoop parallelism. Journal of Biotechnology. 257, 58-60 (2017).
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  • [70]
    2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2906720
    Nguyen, T.V., Wibberg, D., Battenberg, K., Blom, J., Vanden Heuvel, B., Berry, A.M., Kalinowski, J., Pawlowski, K.: An assemblage of Frankia Cluster II strains from California contains the canonical nod genes and also the sulfotransferase gene nodH. BMC Genomics. 17, : 796 (2016).
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [69]
    2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2904976 OA
    Blifernez-Klassen, O., Wibberg, D., Winkler, A., Blom, J., Goesmann, A., Kalinowski, J., Kruse, O.: Complete Chloroplast and Mitochondrial Genome Sequences of the Hydrocarbon Oil-Producing Green MicroalgaBotryococcus brauniiRace B (Showa). Genome Announcements. 4, : e00524-16 (2016).
    PUB | PDF | DOI | WoS | PubMed | Europe PMC
     
  • [68]
    2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2731279
    Huja, S., Oren, Y., Trost, E., Brzuszkiewicz, E., Biran, D., Blom, J., Goesmann, A., Gottschalk, G., Hacker, J., Ron, E.Z., Dobrindt, U.: Genomic Avenue to Avian Colisepticemia. mBio. 6, : e01681-14 (2015).
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  • [67]
    2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2761035
    Arnold, M., Wibberg, D., Blom, J., Schatschneider, S., Winkler, A., Kutter, Y., Rückert, C., Albersmeier, A., Albaum, S., Goesmann, A., Zange, S., Heesemann, J., Pühler, A., Hogardt, M., Vorhölter, F.-J.: Draft Genome Sequence of Pseudomonas aeruginosa Strain WS136, a Highly Cytotoxic ExoS-Positive Wound Isolate Recovered from Pyoderma Gangrenosum. Genome announcements. 3, : e00680-15 (2015).
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [66]
    2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2651944
    Tielen, P., Wibberg, D., Blom, J., Rosin, N., Meyer, A.-K., Bunk, B., Schobert, M., Tüpker, R., Schatschneider, S., Rückert, C., Albersmeier, A., Goesmann, A., Vorhölter, F.-J., Jahn, D., Pühler, A.: Genome Sequence of the Small-Colony Variant Pseudomonas aeruginosa MH27, Isolated from a Chronic Urethral Catheter Infection. Genome announcements. 2, (2014).
    PUB | DOI | PubMed | Europe PMC
     
  • [65]
    2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2658539
    Smits, T.H.M., Guerrero-Prieto, V.M., Hernández-Escarcega, G., Blom, J., Goesmann, A., Rezzonico, F., Duffy, B., Stockwell, V.O.: Whole-Genome Sequencing of Erwinia amylovora Strains from Mexico Detects Single Nucleotide Polymorphisms in rpsL Conferring Streptomycin Resistance and in the avrRpt2 Effector Altering Host Interactions. Genome announcements. 2, (2014).
    PUB | DOI | PubMed | Europe PMC
     
  • [64]
    2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2672926 OA
    Wibberg, D., Tielen, P., Blom, J., Rosin, N., Schobert, M., Tüpker, R., Schatschneider, S., Spilker, D., Albersmeier, A., Goesmann, A., Vorhölter, F.-J., Pühler, A., Jahn, D.: Genome Sequence of the Acute Urethral Catheter Isolate Pseudomonas aeruginosa MH38. Genome announcements. 2, : e00161-14 (2014).
    PUB | PDF | DOI | PubMed | Europe PMC
     
  • [63]
    2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2582332
    Guimarães, L.C., Soares, S.C., Albersmeier, A., Blom, J., Jaenicke, S., Azevedo, V., Soriano, F., Tauch, A., Trost, E.: Complete Genome Sequence of Corynebacterium urealyticum Strain DSM 7111, Isolated from a 9-Year-Old Patient with Alkaline-Encrusted Cystitis. Genome announcements. 1, : e00264-13 (2013).
    PUB | DOI | PubMed | Europe PMC
     
  • [62]
    2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2552500
    Soares, S.C., Silva, A., Trost, E., Blom, J., Ramos, R., Carneiro, A., Ali, A., Santos, A.R., Pinto, A.C., Diniz, C., Barbosa, E.G.V., Dorella, F.A., Aburjaile, F., Rocha, F.S., Nascimento, K.K.F., Guimares, L.C., Almeida, S., Hassan, S.S., Bakhtiar, S.M., Pereira, U.P., Abreu, V.A.C., Schneider, M.P.C., Miyoshi, A., Tauch, A., Azevedo, V.: The Pan-Genome of the Animal Pathogen Corynebacterium pseudotuberculosis Reveals Differences in Genome Plasticity between the Biovar ovis and equi Strains. PLoS ONE. 8, : e53818 (2013).
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [61]
    2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2635520
    Dam, B., Dam, S., Blom, J., Liesack, W.: Genome Analysis Coupled with Physiological Studies Reveals a Diverse Nitrogen Metabolism in Methylocystis sp Strain SC2. Plos One. 8, : e74767 (2013).
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [60]
    2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2637220
    Wu, H., Qiao, J., Blom, J., Rückert, C., Reva, O., Gao, X., Borriss, R.: The Rhizobacterium Bacillus amyloliquefaciens subsp. plantarum NAU-B3 Contains a Large Inversion within the Central Portion of the Genome. Genome announcements. 1, e00941-13 (2013).
    PUB | DOI | PubMed | Europe PMC
     
  • [59]
    2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2607974
    Niu, B., Vater, J., Rückert, C., Blom, J., Lehmann, M., Ru, J.-J., Chen, X.-H., Wang, Q., Borriss, R.: Polymyxin P is the active principle in suppressing phytopathogenic Erwinia spp. by the biocontrol rhizobacterium Paenibacillus polymyxa M-1. BMC microbiology. 13, : 137 (2013).
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  • [58]
    2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2555342
    He, P., Hao, K., Blom, J., Rückert, C., Vater, J., Mao, Z., Wu, Y., Hou, M., He, P., He, Y., Borriss, R.: Genome sequence of the plant growth promoting strain Bacillus amyloliquefaciens subsp. plantarum B9601-Y2 and expression of mersacidin and other secondary metabolites. Journal of biotechnology. 164, 281-291 (2013).
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  • [57]
    2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2602756
    Smits, T.H.M., Rezzonico, F., López, M.M., Blom, J., Goesmann, A., Frey, J.E., Duffy, B.: Phylogenetic position and virulence apparatus of the pear flower necrosis pathogen Erwinia piriflorinigrans CFBP 5888(T) as assessed by comparative genomics. Systematic and applied microbiology. 36, 449-456 (2013).
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  • [56]
    2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2633427
    Wibberg, D., Blom, J., Rückert, C., Winkler, A., Albersmeier, A., Pühler, A., Schlüter, A., Scharf, B.E.: Draft Genome Sequence of Sinorhizobium meliloti RU11/001, a model organism for flagellum structure, motility and chemotaxis. Journal of Biotechnology. 168, 731-733 (2013).
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  • [55]
    2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2622238
    Barbe, S., Llop, P., Blom, J., Cabrefiga, J., Goesmann, A., Duffy, B., Montesinos, E., Smits, T.H.M., Lopez, M.M.: Complete sequence of Erwinia piriflorinigrans plasmids pEPIR37 and pEPIR5 and role of pEPIR37 in pathogen virulence. Plant Pathology. 62, 786-798 (2013).
    PUB | DOI | WoS
     
  • [54]
    2013 | Bielefelder E-Dissertation | PUB-ID: 2604883 OA
    Blom, J.: Comparative genomics on gene and single nucleotide level. Universitätsbibliothek, Bielefeld (2013).
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  • [53]
    2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2558460
    Roetzer, A., Diel, R., Kohl, T.A., Rückert, C., Nübel, U., Blom, J., Wirth, T., Jaenicke, S., Schuback, S., Rüsch-Gerdes, S., Supply, P., Kalinowski, J., Niemann, S.: Whole Genome Sequencing versus Traditional Genotyping for Investigation of a Mycobacterium tuberculosis Outbreak: A Longitudinal Molecular Epidemiological Study. PLoS medicine. 10, : e1001387 (2013).
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  • [52]
    2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2576539
    Wichmann, F., Vorhölter, F.-J., Hersemann, L., Widmer, F., Blom, J., Niehaus, K., Reinhard, S., Conradin, C., Kölliker, R.: The noncanonical type III secretion system of Xanthomonas translucens pv. graminis is essential for forage grass infection. Molecular plant pathology. 14, 576-588 (2013).
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  • [51]
    2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2635526
    Koeck, D.E., Wibberg, D., Koellmeier, T., Blom, J., Jaenicke, S., Winkler, A., Albersmeier, A., Zverlov, V.V., Pühler, A., Schwarz, W.H., Schlüter, A.: Draft genome sequence of the cellulolytic Clostridium thermocellum wild-type strain BC1 playing a role in cellulosic biomass degradation. Journal of Biotechnology. 168, 62-63 (2013).
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  • [50]
    2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2557938
    Mann, R.A., Smits, T.H.M., Bühlmann, A., Blom, J., Goesmann, A., Frey, J.E., Plummer, K.M., Beer, S.V., Luck, J., Duffy, B., Rodoni, B.: Comparative Genomics of 12 Strains of Erwinia amylovora Identifies a Pan-Genome with a Large Conserved Core. PLOS ONE. 8, : e55644 (2013).
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  • [49]
    2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2548286
    Luque-Almagro, V.M., Acera, F., Igeño, M.I., Wibberg, D., Roldán, M.D., Sáez, L.P., Hennig, M., Quesada, A., Huertas, M.J., Blom, J., Merchán, F., Escribano, M.P., Jaenicke, S., Estepa, J., Guijo, M.I., Martínez-Luque, M., Macías, D., Szczepanowski, R., Becerra, G., Ramirez, S., Carmona, M.I., Gutiérrez, O., Manso, I., Pühler, A., Castillo, F., Moreno-Vivián, C., Schlüter, A., Blasco, R.: Draft whole genome sequence of the cyanide-degrading bacterium Pseudomonas pseudoalcaligenes CECT5344. Environmental Microbiology. 15, 253-270 (2013).
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  • [48]
    2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2553455
    De Maayer, P., Chan, W.-Y., Blom, J., Venter, S.N., Duffy, B., Smits, T.H.M., Coutinho, T.A.: The large universal Pantoea plasmid LPP-1 plays a major role in biological and ecological diversification. Bmc Genomics. 13, : 625 (2012).
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  • [47]
    2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2498160 OA
    Schröder, J., Maus, I., Meyer, K., Wördemann, S., Blom, J., Jaenicke, S., Schneider, J., Trost, E., Tauch, A.: Complete genome sequence, lifestyle, and multi-drug resistance of the human pathogen Corynebacterium resistens DSM 45100 isolated from blood samples of a leukemia patient. BMC Genomics. 13, : 141 (2012).
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  • [46]
    2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2513347
    Trost, E., Blom, J., de Castro Soares, S., Huang, I.-H., Al-Dilaimi, A., Schröder, J., Jaenicke, S., Dorella, F.A., Rocha, F.S., Miyoshi, A., Azevedo, V., Schneider, M.P., Silva, A., Camello, T.C., Sabbadini, P.S., Santos, C.S., Santos, L.S., Hirata, R.J., Mattos-Guaraldi, A.L., Efstratiou, A., Schmitt, M.P., Ton-That, H., Tauch, A.: Pangenomic Study of Corynebacterium diphtheriae That Provides Insights into the Genomic Diversity of Pathogenic Isolates from Cases of Classical Diphtheria, Endocarditis, and Pneumonia. Journal of bacteriology. 194, 3199-3215 (2012).
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  • [45]
    2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2490949
    Zschuttig, A., Zimmermann, K., Blom, J., Goesmann, A., Pohlmann, C., Gunzer, F.: Identification and Characterization of Microcin S, a New Antibacterial Peptide Produced by Probiotic Escherichia coli G3/10. PLoS ONE. 7, : e33351 (2012).
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  • [44]
    2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2530221
    Jankowitsch, F., Schwarz, J., Rückert, C., Gust, B., Szczepanowski, R., Blom, J., Pelzer, S., Kalinowski, J., Mack, M.: The genome sequence of the bacterium Streptomyces davawensis JCM 4913 and heterologous production of the unique antibiotic roseoflavin. Journal of bacteriology. 194, 6818-6827 (2012).
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  • [43]
    2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2527519
    Ruijter, J.M., Pfaffl, M.W., Zhao, S., Spiess, A.N., Boggy, G., Blom, J., Rutledge, R.G., Sisti, D., Lievens, A., De Preter, K., Derveaux, S., Hellemans, J., Vandesompele, J.: Evaluation of qPCR curve analysis methods for reliable biomarker discovery: Bias, resolution, precision, and implications. Methods. A companion to methods in enzymology (San Diego, Calif.). 59, 32-46 (2012).
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [42]
    2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2490535
    Heinl, S., Wibberg, D., Eikmeyer, F.G., Szczepanowski, R., Blom, J., Linke, B., Goesmann, A., Grabherr, R., Schwab, H., Pühler, A., Schlüter, A.: Insights into the completely annotated genome of Lactobacillus buchneri CD034, a strain isolated from stable grass silage. Journal of Biotechnology. 161, 153-166 (2012).
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  • [41]
    2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2513256
    Filippini, M., Qi, W., Blom, J., Goesmann, A., Smits, T.H.M., Bagheri, H.C.: Genome Sequence of Fibrella aestuarina BUZ 2T, a Filamentous Marine Bacterium. Journal of bacteriology. 194, 3555 (2012).
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  • [40]
    2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2487853
    Brankatschk, K., Blom, J., Goesmann, A., Smits, T.H.M., Duffy, B.: Comparative genomic analysis of Salmonella enterica subsp. enterica serovar Weltevreden foodborne strains with other serovars. International journal of food microbiology. 155, 247-256 (2012).
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  • [39]
    2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2486204
    Blom, J., Rückert, C., Niu, B., Wang, Q., Borriss, R.: The Complete Genome of Bacillus amyloliquefaciens subsp. plantarum CAU B946 Contains a Gene Cluster for Nonribosomal Synthesis of Iturin A. Journal of bacteriology. 194, 1845-1846 (2012).
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  • [38]
    2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2544774
    Schneider, J., Andrea, H., Blom, J., Jaenicke, S., Rückert, C., Schorsch, C., Szczepanowski, R., Farwick, M., Goesmann, A., Pühler, A., Schaffer, S., Tauch, A., Köhler, T., Brinkrolf, K.: Draft Genome Sequence of Wickerhamomyces ciferrii NRRL Y-1031 F-60-10. Eukaryotic Cell. 11, 1582-1583 (2012).
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  • [37]
    2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2501081
    De Maayer, P., Chan, W.Y., Rezzonico, F., Bühlmann, A., Venter, S.N., Blom, J., Goesmann, A., Frey, J.E., Smits, T.H.M., Duffy, B., Coutinho, T.A.: Complete genome sequence of clinical isolate Pantoea ananatis LMG 5342. Journal of Bacteriology. 194, 1615-1616 (2012).
    PUB | DOI | WoS | PubMed | Europe PMC | GenBank
     
  • [36]
    2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2542210
    Parreira, V.R., Costa, M., Eikmeyer, F.G., Blom, J., Prescott, J.F.: Sequence of Two Plasmids from Clostridium perfringens Chicken Necrotic Enteritis Isolates and Comparison with C. perfringens Conjugative Plasmids. PLoS ONE. 7, : e49753 (2012).
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  • [35]
    2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2526269 OA
    Strobel, T., Al-Dilaimi, A., Blom, J., Gessner, A., Kalinowski, J., Luzhetska, M., Pühler, A., Szczepanowski, R., Bechthold, A., Rückert, C.: Complete genome sequence of Saccharothrix espanaensis DSM 44229T and comparison to the other completely sequenced Pseudonocardiaceae. BMC Genomics. 13, : 465 (2012).
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  • [34]
    2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2529610
    Schork, S., Schlüter, A., Blom, J., Schneiker-Bekel, S., Pühler, A., Goesmann, A., Frosch, M., Schoen, C.: Genome Sequence of a Neisseria meningitidis Capsule Null Locus Strain from the Clonal Complex of Sequence Type 198. Journal of Bacteriology. 194, 5144-5145 (2012).
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  • [33]
    2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2526281
    Zischka, M., Kuenne, C., Blom, J., Dabrowski, P.W., Linke, B., Hain, T., Nitsche, A., Goesmann, A., Larsen, J., Jensen, L.B., Witte, W., Werner, G.: Complete Genome Sequence of the Porcine Isolate Enterococcus faecalis D32. Journal of Bacteriology. 194, 5490-5491 (2012).
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  • [32]
    2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2526298
    Maus, I., Wibberg, D., Stantscheff, R., Eikmeyer, F.G., Seffner, A., Boelter, J., Szczepanowski, R., Blom, J., Jaenicke, S., König, H., Pühler, A., Schlüter, A.: Complete Genome Sequence of the Hydrogenotrophic, Methanogenic Archaeon Methanoculleus bourgensis Strain MS2T, Isolated from a Sewage Sludge Digester. Journal of Bacteriology. 194, 5487-5488 (2012).
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  • [31]
    2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2502106
    Hao, K., He, P., Blom, J., Rückert, C., Mao, Z., Wu, Y., He, Y., Borriss, R.: The Genome of Plant Growth-Promoting Bacillus amyloliquefaciens subsp. plantarum Strain YAU B9601-Y2 Contains a Gene Cluster for Mersacidin Synthesis. Journal of bacteriology. 194, 3264-3265 (2012).
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [30]
    2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2500946
    Mann, R.A., Blom, J., Bühlmann, A., Plummer, K.M., Beer, S.V., Luck, J.E., Goesmann, A., Frey, J.E., Rodoni, B.C., Duffy, B., Smits, T.H.M.: Comparative analysis of the Hrp pathogenicity island of Rubus- and Spiraeoideae-infecting Erwinia amylovora strains identifies the IT region as a remnant of an integrative conjugative element. Gene. 504, 6-12 (2012).
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  • [29]
    2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2394493
    Hinse, D., Vollmer, T., Rückert, C., Blom, J., Kalinowski, J., Knabbe, C., Dreier, J.: Complete genome and comparative analysis of Streptococcus gallolyticus subsp gallolyticus, an emerging pathogen of infective endocarditis. BMC Genomics. 12, : 400 (2011).
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  • [28]
    2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2093398
    Brankatschk, K., Blom, J., Goesmann, A., Smits, T.H.M., Duffy, B.: Genome of a European Fresh-Vegetable Food Safety Outbreak Strain of Salmonella enterica subsp enterica Serovar Weltevreden. Journal of Bacteriology. 193, 2066 (2011).
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  • [27]
    2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2375634
    Pothier, J.F., Vorhölter, F.-J., Blom, J., Goesmann, A., Pühler, A., Smits, T.H., Duffy, B.: The ubiquitous plasmid pXap41 in the invasive phytopathogen Xanthomonas arboricola pv. pruni: complete sequence and comparative genomic analysis. FEMS Microbiology Letters. 323, 52-60 (2011).
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  • [26]
    2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2404767
    Niu, B., Rückert, C., Blom, J., Wang, Q., Borriss, R.: The Genome of the Plant Growth-Promoting Rhizobacterium Paenibacillus polymyxa M-1 Contains Nine Sites Dedicated to Nonribosomal Synthesis of Lipopeptides and Polyketides. Journal of Bacteriology. 193, 5862-5863 (2011).
    PUB | DOI | Download (ext.) | WoS | PubMed | Europe PMC
     
  • [25]
    2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2354731
    Wibberg, D., Blom, J., Jaenicke, S., Kollin, F., Rupp, O., Scharf, B., Schneiker-Bekel, S., Szczepanowski, R., Goesmann, A., Setubal, J.C., Schmitt, R., Pühler, A., Schlüter, A.: Complete genome sequencing of Agrobacterium sp. H13-3, the former Rhizobium lupini H13-3, reveals a tripartite genome consisting of a circular and a linear chromosome and an accessory plasmid but lacking a tumor-inducing Ti-plasmid. Journal of Biotechnology. 155, 50-62 (2011).
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  • [24]
    2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2326511
    Rückert, C., Blom, J., Chen, X.H., Reva, O., Borriss, R.: Genome sequence of B. amyloliquefaciens type strain DSM7(T) reveals differences to plant-associated B. amyloliquefaciens FZB42. Journal of Biotechnology. 155, 78-85 (2011).
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  • [23]
    2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2375954
    Borriss, R., Chen, X.-H., Rückert, C., Blom, J., Becker, A., Baumgarth, B., Fan, B., Pukall, R., Schumann, P., Sproer, C., Junge, H., Vater, J., Pühler, A., Klenk, H.-P.: Relationship of Bacillus amyloliquefaciens clades associated with strains DSM 7T and FZB42T: a proposal for Bacillus amyloliquefaciens subsp. amyloliquefaciens subsp. nov. and Bacillus amyloliquefaciens subsp. plantarum subsp. nov. based on complete genome sequence comparisons. Int J Syst Evol Microbiol. 61, 1786-1801 (2011).
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    2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2472468
    Llop, P., Cabrefiga, J., Smits, T.H.M., Dreo, T., Barbé, S., Pulawska, J., Bultreys, A., Blom, J., Duffy, B., Montesinos, E., Lopez, M.M.: Erwinia amylovora novel plasmid pEI70: Complete sequence, biogeography, and role in aggressiveness in the fire blight phytopathogen. PLoS one. 6, : e28651 (2011).
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  • [21]
    2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2326445
    Schneider, J., Blom, J., Jaenicke, S., Linke, B., Brinkrolf, K., Neuweger, H., Tauch, A., Goesmann, A.: RAPYD - Rapid Annotation Platform for Yeast Data. Journal of Biotechnology. 155, 118-126 (2011).
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  • [20]
    2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2307104
    Smits, T.H.M., Rezzonico, F., Kamber, T., Blom, J., Goesmann, A., Ishimaru, C.A., Frey, J.E., Stockwell, V.O., Duffy, B.: Metabolic Versatility and Antibacterial Metabolite Biosynthesis Are Distinguishing Genomic Features of the Fire Blight Antagonist Pantoea vagans C9-1. PLoS ONE. 6, : e22247 (2011).
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  • [19]
    2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2326455
    Krol, E., Blom, J., Winnebald, J., Berhoerster, A., Barnett, M.J., Goesmann, A., Baumbach, J., Becker, A.: RhizoRegNet-A database of rhizobial transcription factors and regulatory networks. Journal of Biotechnology. 155, 127-134 (2011).
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  • [18]
    2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2326518
    Szczepanowski, R., Eikmeyer, F.G., Harfmann, J., Blom, J., Rogers, L.M., Top, E.M., Schlüter, A.: Sequencing and comparative analysis of IncP-1 alpha antibiotic resistance plasmids reveal a highly conserved backbone and differences within accessory regions. Journal of Biotechnology. 155, 95-103 (2011).
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  • [17]
    2011 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2382565
    Borriss, R., Rückert, C., Blom, J., Bezuidt, O., Reva, O., Klenk, H.P.: Whole Genome Sequence Comparisons in Taxonomy. In: Rainey, F. and Oren, A. (eds.) Taxonomy of Prokaryotes (Methods in Microbiology). Methods in microbiology. 38, p. 473. Academic Press,, Waltham, MA, USA (2011).
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  • [16]
    2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2290032
    Joseph, B., Schwarz, R.F., Linke, B., Blom, J., Becker, A., Claus, H., Goesmann, A., Frosch, M., Mueller, T., Vogel, U., Schoen, C.: Virulence Evolution of the Human Pathogen Neisseria meningitidis by Recombination in the Core and Accessory Genome. PLoS ONE. 6, : e18441 (2011).
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  • [15]
    2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2093389
    Schoen, C., Weber-Lehmann, J., Blom, J., Joseph, B., Goesmann, A., Strittmatter, A., Frosch, M.: Whole-Genome Sequence of the Transformable Neisseria meningitidis Serogroup A Strain WUE2594. Journal of Bacteriology. 193, 2064-2065 (2011).
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  • [14]
    2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2289952
    Blom, J., Jakobi, T., Doppmeier, D., Jaenicke, S., Kalinowski, J., Stoye, J., Goesmann, A.: Exact and complete short-read alignment to microbial genomes using Graphics Processing Unit programming. Bioinformatics. 27, 1351-1358 (2011).
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [13]
    2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2289928
    Kant, R., Blom, J., Palva, A., Siezen, R.J., de Vos, W.M.: Comparative genomics of Lactobacillus. Microbial Biotechnology. 4, 323-332 (2011).
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  • [12]
    2011 | Zeitschriftenaufsatz | Im Druck | PUB-ID: 2017892
    Schneiker-Bekel, S., Wibberg, D., Bekel, T., Blom, J., Linke, B., Neuweger, H., Stiens, M., Vorhölter, F.-J., Weidner, S., Goesmann, A., Pühler, A., Schlüter, A.: The complete genome sequence of the dominant Sinorhizobium meliloti field isolate SM11 extends the S. meliloti pan-genome. Journal of Biotechnology. 155, 20-33 (In Press).
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  • [11]
    2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2087955
    Hackl, M., Jakobi, T., Blom, J., Doppmeier, D., Brinkrolf, K., Szczepanowski, R., Bernhart, S.H., Höner zu Siederdissen, C., Bort, J.A.H., Wieser, M., Kunert, R., Jeffs, S., Hofacker, I.L., Goesmann, A., Pühler, A., Borth, N., Grillari, J.: Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering. Journal of Biotechnology. 153, 62-75 (2011).
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  • [10]
    2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2036058
    Margaret, I., Becker, A., Blom, J., Bonilla, I., Goesmann, A., Göttfert, M., Lloret, J., Mittard-Runte, V., Rückert, C., Ruiz-Sainz, J.-E., Vinardell, J.M., Weidner, S.: Symbiotic properties and first analyses of the genomic sequence of the fast growing model strain Sinorhizobium fredii HH103 nodulating soybean. Journal of Biotechnology. 155, 11-19 (2011).
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  • [9]
    2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2003418
    Powney, R., Smits, T.H.M., Sawbridge, T., Frey, B., Blom, J., Frey, J.E., Plummer, K.M., Beer, S.V., Luck, J., Duffy, B., Rodoni, B.: Genome Sequence of an Erwinia amylovora Strain with Pathogenicity Restricted to Rubus Plants. Journal of Bacteriology. 193, 785-786 (2011).
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  • [8]
    2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1929692
    Schneider, J., Vorhölter, F.-J., Trost, E., Blom, J., Musa, Y.R., Neuweger, H., Niehaus, K., Schatschneider, S., Tauch, A., Goesmann, A.: CARMEN - Comparative Analysis and in silico Reconstruction of organism-specific MEtabolic Networks. Genetics and Molecular Research. 9, 1660-1672 (2010).
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  • [7]
    2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1785275 OA
    Trost, E., Götker, S., Schneider, J., Schneiker-Bekel, S., Szczepanowski, R., Tilker, A., Viehöver, P., Arnold, W., Bekel, T., Blom, J., Gartemann, K.-H., Linke, B., Goesmann, A., Pühler, A., Shukla, S.K., Tauch, A.: Complete genome sequence and lifestyle of black-pigmented Corynebacterium aurimucosum ATCC 700975 (formerly C. nigricans CN-1) isolated from a vaginal swab of a woman with spontaneous abortion. BMC Genomics. 11, : 91 (2010).
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    2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1796445
    Smits, T.H.M., Rezzonico, F., Kamber, T., Blom, J., Goesmann, A., Frey, J.E., Duffy, B.: Complete Genome Sequence of the Fire Blight Pathogen Erwinia amylovora CFBP 1430 and Comparison to Other Erwinia spp. MOLECULAR PLANT-MICROBE INTERACTIONS. 23, 384-393 (2010).
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  • [5]
    2010 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 1894907
    Mittard-Runte, V., Bekel, T., Blom, J., Dondrup, M., Henckel, K., Jaenicke, S., Krause, L., Linke, B., Neuweger, H., Schneiker-Bekel, S., Goesmann, A.: Practical Guide: Genomic Techniques and How to Apply Them to Marine Questions. In: Cock, J.M., Tessmar-Raible, K., Boyen, C., and Viard, F. (eds.) Introduction to Marine Genomics (Advances in Marine Genomics). 1, p. 315-396. Springer Netherlands, Netherlands (2010).
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    2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1930110
    Joseph, B., Schneiker-Bekel, S., Schramm-Glueck, A., Blom, J., Claus, H., Linke, B., Schwarz, R.F., Becker, A., Goesmann, A., Frosch, M., Schoen, C.: Comparative Genome Biology of a Serogroup B Carriage and Disease Strain Supports a Polygenic Nature of Meningococcal Virulence. JOURNAL OF BACTERIOLOGY. 192, 5363-5377 (2010).
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  • [3]
    2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1783187 OA
    Blom, J., Albaum, S., Doppmeier, D., Pühler, A., Vorhölter, F.-J., Zakrzewski, M., Goesmann, A.: EDGAR: a software framework for the comparative analysis of prokaryotic genomes. BMC Bioinformatics. 10, : 154 (2009).
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  • [2]
    2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1592257
    Schoen, C., Blom, J., Claus, H., Schramm-Glueck, A., Brandt, P., Mueller, T., Goesmann, A., Joseph, B., Konietzny, S., Kurzai, O., Schmitt, C., Friedrich, T., Linke, B., Vogel, U., Frosch, M.: Whole-genome comparison of disease and carriage strains provides insights into virulence evolution in Neisseria meningitidis. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 105, 3473-3478 (2008).
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    2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1585939
    Tauch, A., Schneider, J., Szczepanowski, R., Tilker, A., Viehöver, P., Gartemann, K.-H., Arnold, W., Blom, J., Brinkrolf, K., Brune, I., Goetker, S., Weisshaar, B., Goesmann, A., Droege, M., Pühler, A.: Ultrafast pyrosequencing of Corynebacterium kroppenstedtii DSM44385 revealed insights into the physiology of a lipophilic corynebacterium that lacks mycolic acids. Journal of Biotechnology. 136, 22-30 (2008).
    PUB | DOI | WoS | PubMed | Europe PMC
     

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