PUB - Publikationen an der Universität Bielefeld

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3319 Einträge gefunden, die diesen Artikel zitieren von denen 10 angezeigt werden

Basic local alignment search tool.
Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ., J. Mol. Biol. 215(3), 1990
PMID: 2231712

Pathogenicity and other genomic islands in plant pathogenic bacteria.
Arnold DL, Pitman A, Jackson RW., Mol. Plant Pathol. 4(5), 2003
PMID: IND43615000

Ausubel, 1987

Xanthan gum biosynthesis and application: a biochemical/genetic perspective.
Becker A, Katzen F, Puhler A, Ielpi L., Appl. Microbiol. Biotechnol. 50(2), 1998
PMID: 9763683

MBA: a literature mining system for extracting biomedical abbreviations.
Xu Y, Wang Z, Lei Y, Zhao Y, Xue Y., BMC Bioinformatics 10(), 2009
PMID: 19134199

Two new complete genome sequences offer insight into host and tissue specificity of plant pathogenic Xanthomonas spp.
Bogdanove AJ, Koebnik R, Lu H, Furutani A, Angiuoli SV, Patil PB, Van Sluys MA, Ryan RP, Meyer DF, Han SW, Aparna G, Rajaram M, Delcher AL, Phillippy AM, Puiu D, Schatz MC, Shumway M, Sommer DD, Trapnell C, Benahmed F, Dimitrov G, Madupu R, Radune D, Sullivan S, Jha G, Ishihara H, Lee SW, Pandey A, Sharma V, Sriariyanun M, Szurek B, Vera-Cruz CM, Dorman KS, Ronald PC, Verdier V, Dow JM, Sonti RV, Tsuge S, Brendel VP, Rabinowicz PD, Leach JE, White FF, Salzberg SL., J. Bacteriol. 193(19), 2011
PMID: 21784931

Capturing heterosis in forage crop cultivar development
Brummer, Crop Sci 39(), 1999

Regulation and secretion of Xanthomonas virulence factors.
Buttner D, Bonas U., FEMS Microbiol. Rev. 34(2), 2009
PMID: 19925633

Type III protein secretion in plant pathogenic bacteria.
Buttner D, He SY., Plant Physiol. 150(4), 2009
PMID: 19458111

Functional analysis of HrpF, a putative type III translocon protein from Xanthomonas campestris pv. vesicatoria.
Buttner D, Nennstiel D, Klusener B, Bonas U., J. Bacteriol. 184(9), 2002
PMID: 11948151

Characterization of the nonconserved hpaB-hrpF region in the hrp pathogenicity island from Xanthomonas campestris pv. vesicatoria
Büttner, Mol. Plant-Microbe Interact 20(), 2007

Molecular analysis of the hrp gene cluster in Xanthomonas oryzae pathovar oryzae KACC10859.
Cho HJ, Park YJ, Noh TH, Kim YT, Kim JG, Song ES, Lee DH, Lee BM., Microb. Pathog. 44(6), 2007
PMID: 18313258

Comparison of the genomes of two Xanthomonas pathogens with differing host specificities.
da Silva AC, Ferro JA, Reinach FC, Farah CS, Furlan LR, Quaggio RB, Monteiro-Vitorello CB, Van Sluys MA, Almeida NF, Alves LM, do Amaral AM, Bertolini MC, Camargo LE, Camarotte G, Cannavan F, Cardozo J, Chambergo F, Ciapina LP, Cicarelli RM, Coutinho LL, Cursino-Santos JR, El-Dorry H, Faria JB, Ferreira AJ, Ferreira RC, Ferro MI, Formighieri EF, Franco MC, Greggio CC, Gruber A, Katsuyama AM, Kishi LT, Leite RP, Lemos EG, Lemos MV, Locali EC, Machado MA, Madeira AM, Martinez-Rossi NM, Martins EC, Meidanis J, Menck CF, Miyaki CY, Moon DH, Moreira LM, Novo MT, Okura VK, Oliveira MC, Oliveira VR, Pereira HA, Rossi A, Sena JA, Silva C, de Souza RF, Spinola LA, Takita MA, Tamura RE, Teixeira EC, Tezza RI, Trindade dos Santos M, Truffi D, Tsai SM, White FF, Setubal JC, Kitajima JP., Nature 417(6887), 2002
PMID: 12024217

The Type III secretion system of Xanthomonas fuscans subsp. fuscans is involved in the phyllosphere colonization process and in transmission to seeds of susceptible beans.
Darsonval A, Darrasse A, Meyer D, Demarty M, Durand K, Bureau C, Manceau C, Jacques MA., Appl. Environ. Microbiol. 74(9), 2008
PMID: 18326683

Identifying bacterial genes and endosymbiont DNA with Glimmer.
Delcher AL, Bratke KA, Powers EC, Salzberg SL., Bioinformatics 23(6), 2007
PMID: 17237039

Genomic islands in pathogenic and environmental microorganisms.
Dobrindt U, Hochhut B, Hentschel U, Hacker J., Nat. Rev. Microbiol. 2(5), 2004
PMID: 15100694

Pathogenic variation among the causal agents of bacterial wilt of forage grasses
Egli, J. Phytopathol 104(), 1982

Bacterial wilt, a new forage grass disease
Egli, J. Phytopathol 82(), 1975

Sequence and expression analysis of the hrpB pathogenicity operon of Xanthomonas campestris pv. vesicatoria which encodes eight proteins with similarity to components of the Hrp, Ysc, Spa, and Fli secretion systems
Fenselau, Mol. Plant-Microbe Interact 8(), 1995

Identification of novel type III secretion effectors in Xanthomonas oryzae pv. oryzae
Furutani, Mol. Plant-Microbe Interact 22(), 2009

Bacterial type III secretion systems are ancient and evolved by multiple horizontal-transfer events.
Gophna U, Ron EZ, Graur D., Gene 312(), 2003
PMID: 12909351

Type III effector proteins from the plant pathogen Xanthomonas and their role in the interaction with the host plant.
Gurlebeck D, Thieme F, Bonas U., J. Plant Physiol. 163(3), 2005
PMID: 16386329

A ‘repertoire for repertoire’ hypothesis: repertoires of type three effectors are candidate determinants of host specificity in Xanthomonas
Hajri, PLoS ONE 4(), 2009

BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT
Hall, Nucleic Acids Symp. Ser 41(), 1999

Comparison of 16S ribosomal DNA sequences of all Xanthomonas species.
Hauben L, Vauterin L, Swings J, Moore ER., Int. J. Syst. Bacteriol. 47(2), 1997
PMID: 9103617

PCR-mediated recombination and mutagenesis. SOEing together tailor-made genes.
Horton RM., Mol. Biotechnol. 3(2), 1995
PMID: 7620981

A lego system for conditional inference
Hothorn, Am. Stat 60(), 2006

Prodigal: prokaryotic gene recognition and translation initiation site identification.
Hyatt D, Chen GL, Locascio PF, Land ML, Larimer FW, Hauser LJ., BMC Bioinformatics 11(), 2010
PMID: 20211023

Construction and characterization of a hrpG mutant rendering constitutive expression of hrp genes in Xanthomonas campestris pv. campestris
Jiang, Prog. Nat. Sci 16(), 2006

The plant immune system.
Jones JD, Dangl JL., Nature 444(7117), 2006
PMID: 17108957

A wide-host-range suicide vector for improving reverse genetics in gram-negative bacteria: inactivation of the blaA gene of Yersinia enterocolitica.
Kaniga K, Delor I, Cornelis GR., Gene 109(1), 1991
PMID: 1756974

How Xanthomonas type III effectors manipulate the host plant.
Kay S, Bonas U., Curr. Opin. Microbiol. 12(1), 2009
PMID: 19168386

Fundamentals of sequencing of difficult templates--an overview.
Kieleczawa J., J Biomol Tech 17(3), 2006
PMID: 16870712

Xanthomonas T3S Effector XopN Suppresses PAMP-Triggered Immunity and Interacts with a Tomato Atypical Receptor-Like Kinase and TFT1.
Kim JG, Li X, Roden JA, Taylor KW, Aakre CD, Su B, Lalonde S, Kirik A, Chen Y, Baranage G, McLane H, Martin GB, Mudgett MB., Plant Cell 21(4), 2009
PMID: 19366901

Genetic diversity and pathogenicity of the grass pathogen Xanthomonas translucens pv. graminis.
Kolliker R, Kraehenbuehl R, Boller B, Widmer F., Syst. Appl. Microbiol. 29(2), 2005
PMID: 16464692

GISMO--gene identification using a support vector machine for ORF classification.
Krause L, McHardy AC, Nattkemper TW, Puhler A, Stoye J, Meyer F., Nucleic Acids Res. 35(2), 2006
PMID: 17175534

Clustal W and Clustal X version 2.0.
Larkin MA, Blackshields G, Brown NP, Chenna R, McGettigan PA, McWilliam H, Valentin F, Wallace IM, Wilm A, Lopez R, Thompson JD, Gibson TJ, Higgins DG., Bioinformatics 23(21), 2007
PMID: 17846036

The genome sequence of Xanthomonas oryzae pathovar oryzae KACC10331, the bacterial blight pathogen of rice.
Lee BM, Park YJ, Park DS, Kang HW, Kim JG, Song ES, Park IC, Yoon UH, Hahn JH, Koo BS, Lee GB, Kim H, Park HS, Yoon KO, Kim JH, Jung CH, Koh NH, Seo JS, Go SJ., Nucleic Acids Res. 33(2), 2005
PMID: 15673718

Leyns, 1993

REGANOR: a gene prediction server for prokaryotic genomes and a database of high quality gene predictions for prokaryotes.
Linke B, McHardy AC, Neuweger H, Krause L, Meyer F., Appl. Bioinformatics 5(3), 2006
PMID: 16922601

Histological investigations on the pathogenesis of Xanthomonas campestris pv. graminis to Lolium multiflorum
Masuch, EPPO Bull 19(), 1989

The conserved Xanthomonas campestris pv. vesicatoria effector protein XopX is a virulence factor and suppresses host defense in Nicotiana benthamiana.
Metz M, Dahlbeck D, Morales CQ, Al Sady B, Clark ET, Staskawicz BJ., Plant J. 41(6), 2005
PMID: 15743446

GenDB--an open source genome annotation system for prokaryote genomes.
Meyer F, Goesmann A, McHardy AC, Bartels D, Bekel T, Clausen J, Kalinowski J, Linke B, Rupp O, Giegerich R, Puhler A., Nucleic Acids Res. 31(8), 2003
PMID: 12682369

Interactions between Xanthomonas campestris pv. graminis strains and meadow fescue and Italian rye grass cultivars.
Michel VV., Plant Dis. 85(5), 2001
PMID: IND23218129

Comparative analyses of Xanthomonas and Xylella complete genomes.
Moreira LM, De Souza RF, Digiampietri LA, Da Silva AC, Setubal JC., OMICS 9(1), 2005
PMID: 15805778

Novel insights into the genomic basis of citrus canker based on the genome sequences of two strains of Xanthomonas fuscans subsp. aurantifolii.
Moreira LM, Almeida NF Jr, Potnis N, Digiampietri LA, Adi SS, Bortolossi JC, da Silva AC, da Silva AM, de Moraes FE, de Oliveira JC, de Souza RF, Facincani AP, Ferraz AL, Ferro MI, Furlan LR, Gimenez DF, Jones JB, Kitajima EW, Laia ML, Leite RP Jr, Nishiyama MY, Rodrigues Neto J, Nociti LA, Norman DJ, Ostroski EH, Pereira HA Jr, Staskawicz BJ, Tezza RI, Ferro JA, Vinatzer BA, Setubal JC., BMC Genomics 11(), 2010
PMID: 20388224

A simple cipher governs DNA recognition by TAL effectors.
Moscou MJ, Bogdanove AJ., Science 326(5959), 2009
PMID: 19933106

Molecular signals required for type III secretion and translocation of the Xanthomonas campestris AvrBs2 protein to pepper plants
Mudgett, Proc. Natl. Acad. Sci. USA 97(), 2000

A newly discovered post-translational modification--the acetylation of serine and threonine residues.
Mukherjee S, Hao YH, Orth K., Trends Biochem. Sci. 32(5), 2007
PMID: 17412595

cDNA-AFLP analysis unravels a genome-wide hrpG-regulon in the plant pathogen Xanthomonas campestris pv. vesicatoria.
Noel L, Thieme F, Nennstiel D, Bonas U., Mol. Microbiol. 41(6), 2001
PMID: 11580833

Two novel type III-secreted proteins of Xanthomonas campestris pv. vesicatoria are encoded within the hrp pathogenicity island.
Noel L, Thieme F, Nennstiel D, Bonas U., J. Bacteriol. 184(5), 2002
PMID: 11844763

XopC and XopJ, two novel type III effector proteins from Xanthomonas campestris pv. vesicatoria.
Noel L, Thieme F, Gabler J, Buttner D, Bonas U., J. Bacteriol. 185(24), 2003
PMID: 14645268

Genome sequence of Xanthomonas oryzae pv. oryzae suggests contribution of large numbers of effector genes and insertion sequences to its race diversity
Ochiai, Japan Agric. Research Quart. 39(), 2005

Site-directed gene replacement of the phytopathogen Xanthomonas axonopodis pv. citri.
Oshiro EE, Nepomuceno RS, Faria JB, Ferreira LC, Ferreira RC., J. Microbiol. Methods 65(1), 2005
PMID: 16087261

Phylogenetic structure of Xanthomonas determined by comparison of gyrB sequences.
Parkinson N, Cowie C, Heeney J, Stead D., Int. J. Syst. Evol. Microbiol. 59(Pt 2), 2009
PMID: 19196764

The role of horizontal transfer in the evolution of a highly variable lipopolysaccharide biosynthesis locus in xanthomonads that infect rice, citrus and crucifers.
Patil PB, Bogdanove AJ, Sonti RV., BMC Evol. Biol. 7(), 2007
PMID: 18053269

Two distinct modes of nucleosome modulation associated with different degrees of dependence of nucleosome positioning on the underlying DNA sequence.
Dai Z, Dai X, Xiang Q, Feng J, Wang J, Deng Y, He C., BMC Genomics 10(), 2009
PMID: 19134214

Comparative and functional genomic analyses of the pathogenicity of phytopathogen Xanthomonas campestris pv. campestris
Qian, Genome Resi 15(), 2005

A genetic screen to isolate type III effectors translocated into pepper cells during Xanthomonas infection
Roden, Proc. Natl. Acad. Sci. USA 101(), 2004

A single plant resistance gene promoter engineered to recognize multiple TAL effectors from disparate pathogens
Römer, Proc. Natl. Acad. Sci. USA 106(), 2009

Recognition of AvrBs3-like proteins is mediated by specific binding to promoters of matching pepper Bs3 alleles.
Romer P, Strauss T, Hahn S, Scholze H, Morbitzer R, Grau J, Bonas U, Lahaye T., Plant Physiol. 150(4), 2009
PMID: 19448036

HrpB2 and HrpF from Xanthomonas are type III-secreted proteins and essential for pathogenicity and recognition by the host plant.
Rossier O, Van den Ackerveken G, Bonas U., Mol. Microbiol. 38(4), 2000
PMID: 11115117

Communication with a growing family: diffusible signal factor (DSF) signaling in bacteria
Ryan, Trends Microbioli 19(), 2011

Pathogenomics of Xanthomonas: understanding bacterium-plant interactions.
Ryan RP, Vorholter FJ, Potnis N, Jones JB, Van Sluys MA, Bogdanove AJ, Dow JM., Nat. Rev. Microbiol. 9(5), 2011
PMID: 21478901

Genome sequence of the plant pathogen Ralstonia solanacearum.
Salanoubat M, Genin S, Artiguenave F, Gouzy J, Mangenot S, Arlat M, Billault A, Brottier P, Camus JC, Cattolico L, Chandler M, Choisne N, Claudel-Renard C, Cunnac S, Demange N, Gaspin C, Lavie M, Moisan A, Robert C, Saurin W, Schiex T, Siguier P, Thebault P, Whalen M, Wincker P, Levy M, Weissenbach J, Boucher CA., Nature 415(6871), 2002
PMID: 11823852

Strand bias structure in mouse DNA gives a glimpse of how chromatin structure affects gene expression.
Evans KJ., BMC Genomics 9(), 2008
PMID: 18194530

Genome-enabled determination of amino acid biosynthesis in Xanthomonas campestris pv. campestris and identification of biosynthetic pathways for alanine, glycine, and isoleucine by 13C-isotopologue profiling.
Schatschneider S, Vorholter FJ, Ruckert C, Becker A, Eisenreich W, Puhler A, Niehaus K., Mol. Genet. Genomics 286(3-4), 2011
PMID: 21853248

The complete genome sequence of the acarbose producer Actinoplanes sp. SE50/110.
Schwientek P, Szczepanowski R, Ruckert C, Kalinowski J, Klein A, Selber K, Wehmeier UF, Stoye J, Puhler A., BMC Genomics 13(), 2012
PMID: 22443545

Mutagenesis of 18 type III effectors reveals virulence function of XopZ(PXO99) in Xanthomonas oryzae pv. oryzae
Song, Mol. Plant-Microbe Interact 23(), 2010

Genome-wide sequencing data reveals virulence factors implicated in banana Xanthomonas wilt.
Studholme DJ, Kemen E, MacLean D, Schornack S, Aritua V, Thwaites R, Grant M, Smith J, Jones JD., FEMS Microbiol. Lett. 310(2), 2010
PMID: 20695894

Draft Genome Sequences of Xanthomonas sacchari and Two Banana-Associated Xanthomonads Reveal Insights into the Xanthomonas Group 1 Clade.
Studholme DJ, Wasukira A, Paszkiewicz K, Aritua V, Thwaites R, Smith J, Grant M., Genes (Basel) 2(4), 2011
PMID: 24710305

Characterization of the hrpF pathogenicity peninsula of Xanthomonas oryzae pv. oryzae
Sugio, Mol. Plant-Microbe Interact 18(), 2005

Type III secretion-dependent host defence elicitation and type III secretion-independent growth within leaves by Xanthomonas campestris pv. campestris.
Sun W, Liu L, Bent AF., Mol. Plant Pathol. 12(8), 2011
PMID: 21726374

Spontaneous and induced mutations in a single open reading frame alter both virulence and avirulence in Xanthomonas campestris pv. vesicatoria avrBs2.
Swords KM, Dahlbeck D, Kearney B, Roy M, Staskawicz BJ., J. Bacteriol. 178(15), 1996
PMID: 8755898

The, 2008

Insights into genome plasticity and pathogenicity of the plant pathogenic bacterium Xanthomonas campestris pv. vesicatoria revealed by the complete genome sequence.
Thieme F, Koebnik R, Bekel T, Berger C, Boch J, Buttner D, Caldana C, Gaigalat L, Goesmann A, Kay S, Kirchner O, Lanz C, Linke B, McHardy AC, Meyer F, Mittenhuber G, Nies DH, Niesbach-Klosgen U, Patschkowski T, Ruckert C, Rupp O, Schneiker S, Schuster SC, Vorholter FJ, Weber E, Puhler A, Bonas U, Bartels D, Kaiser O., J. Bacteriol. 187(21), 2005
PMID: 16237009

New type III effectors from Xanthomonas campestris pv. vesicatoria trigger plant reactions dependent on a conserved N-myristoylation motif
Thieme, Mol. Plant-Microbe Interact 20(), 2007

Comparative genomic analysis of plant-associated bacteria
Van, Annu. Rev. Phytopathol 40(), 2002

Comparison of two Xanthomonas campestris pathovar campestris genomes revealed differences in their gene composition.
Vorholter FJ, Thias T, Meyer F, Bekel T, Kaiser O, Puhler A, Niehaus K., J. Biotechnol. 106(2-3), 2003
PMID: 14651861

The genome of Xanthomonas campestris pv. campestris B100 and its use for the reconstruction of metabolic pathways involved in xanthan biosynthesis.
Vorholter FJ, Schneiker S, Goesmann A, Krause L, Bekel T, Kaiser O, Linke B, Patschkowski T, Ruckert C, Schmid J, Sidhu VK, Sieber V, Tauch A, Watt SA, Weisshaar B, Becker A, Niehaus K, Puhler A., J. Biotechnol. 134(1-2), 2008
PMID: 18304669

Monitoring in planta bacterial infection at both cellular and whole-plant levels using the green fluorescent protein variant GFPuv.
Wang K, Kang L, Anand A, Lazarovits G, Mysore KS., New Phytol. 174(1), 2007
PMID: 17335510

A Pseudomonas syringae pv. tomato DC3000 mutant lacking the type III effector HopQ1-1 is able to cause disease in the model plant Nicotiana benthamiana.
Wei CF, Kvitko BH, Shimizu R, Crabill E, Alfano JR, Lin NC, Martin GB, Huang HC, Collmer A., Plant J. 51(1), 2007
PMID: 17559511

HrpG, a key hrp regulatory protein of Xanthomonas campestris pv. vesicatoria is homologous to two-component response regulators
Wengelnik, Mol. Plant-Microbe Interact 9(), 1996

Mutations in the regulatory gene hrpG of Xanthomonas campestris pv. vesicatoria result in constitutive expression of all hrp genes.
Wengelnik K, Rossier O, Bonas U., J. Bacteriol. 181(21), 1999
PMID: 10542187

Avirulence gene avrRxv from Xanthomonas campestris pv. vesicatoria specifies resistance on tomato line Hawaii-7998
Whalen, Mol. Plant-Microbe Interact 6(), 1993

The type III effectors of Xanthomonas.
White FF, Potnis N, Jones JB, Koebnik R., Mol. Plant Pathol. 10(6), 2009
PMID: 19849782

Phenotypic and molecular genetic characterization indicate no major race-specific interactions between Xanthomonas translucens pv. graminis and Lolium multiflorum
Wichmann F, Muller Hug B, Widmer F, Boller B, Studer B, Kolliker R., Plant Pathol. 60(2), 2011
PMID: IND44501804

Expression of hrpG and activation of response regulator HrpG are controlled by distinct signal cascades in Ralstonia solanacearum
Yoshimochi T, Zhang Y, Kiba A, Hikichi Y, Ohnishi K., J. Gen. Plant Pathol. 75(3), 2009
PMID: IND44212192

Elucidation of the hrp clusters of Xanthomonas oryzae pv. oryzicola that control the hypersensitive response in nonhost tobacco and pathogenicity in susceptible host rice.
Zou LF, Wang XP, Xiang Y, Zhang B, Li YR, Xiao YL, Wang JS, Walmsley AR, Chen GY., Appl. Environ. Microbiol. 72(9), 2006
PMID: 16957248