The Rhizobacterium Bacillus amyloliquefaciens subsp. plantarum NAU-B3 Contains a Large Inversion within the Central Portion of the Genome

Wu H, Qiao J, Blom J, Rückert C, Reva O, Gao X, Borriss R (2013)
Genome announcements 1(6): e00941-13.

Zeitschriftenaufsatz | Veröffentlicht | Englisch
 
Download
Es wurden keine Dateien hochgeladen. Nur Publikationsnachweis!
DOI
Autor*in
Wu, Huijun; Qiao, Junqing; Blom, JochenUniBi; Rückert, ChristianUniBi ; Reva, Oleg; Gao, Xuewen; Borriss, Rainer
Einrichtung
Centrum für Biotechnologie > Institut für Genomforschung und Systembiologie
Centrum für Biotechnologie > Arbeitsgruppe J. Kalinowski
Centrum für Biotechnologie > Arbeitsgruppe A. Goesmann
Centrum für Biotechnologie > Technologieplattformen > Bioinformatics Resource Facility
Technische Fakultät > Computational Genomics
Abstract / Bemerkung
The genome of rhizobacterium Bacillus amyloliquefaciens subsp. plantarum strain NAU-B3 is 4,196,170 bp in size and harbors 4,001 genes. Nine giant gene clusters are dedicated to the nonribosomal synthesis of antimicrobial lipopeptides and polyketides. Remarkably, NAU_B3 contains a large inversion within the central portion of the genome.
Erscheinungsjahr
2013
Zeitschriftentitel
Genome announcements
Band
1
Ausgabe
6
Seite(n)
e00941-13
ISSN
2169-8287
eISSN
2169-8287
Page URI
https://pub.uni-bielefeld.de/record/2637220

Zitieren

Wu H, Qiao J, Blom J, et al. The Rhizobacterium Bacillus amyloliquefaciens subsp. plantarum NAU-B3 Contains a Large Inversion within the Central Portion of the Genome. Genome announcements. 2013;1(6):e00941-13.
Wu, H., Qiao, J., Blom, J., Rückert, C., Reva, O., Gao, X., & Borriss, R. (2013). The Rhizobacterium Bacillus amyloliquefaciens subsp. plantarum NAU-B3 Contains a Large Inversion within the Central Portion of the Genome. Genome announcements, 1(6), e00941-13. doi:10.1128/genomeA.00941-13
Wu, Huijun, Qiao, Junqing, Blom, Jochen, Rückert, Christian, Reva, Oleg, Gao, Xuewen, and Borriss, Rainer. 2013. “The Rhizobacterium Bacillus amyloliquefaciens subsp. plantarum NAU-B3 Contains a Large Inversion within the Central Portion of the Genome”. Genome announcements 1 (6): e00941-13.
Wu, H., Qiao, J., Blom, J., Rückert, C., Reva, O., Gao, X., and Borriss, R. (2013). The Rhizobacterium Bacillus amyloliquefaciens subsp. plantarum NAU-B3 Contains a Large Inversion within the Central Portion of the Genome. Genome announcements 1, e00941-13.
Wu, H., et al., 2013. The Rhizobacterium Bacillus amyloliquefaciens subsp. plantarum NAU-B3 Contains a Large Inversion within the Central Portion of the Genome. Genome announcements, 1(6), p e00941-13.
H. Wu, et al., “The Rhizobacterium Bacillus amyloliquefaciens subsp. plantarum NAU-B3 Contains a Large Inversion within the Central Portion of the Genome”, Genome announcements, vol. 1, 2013, pp. e00941-13.
Wu, H., Qiao, J., Blom, J., Rückert, C., Reva, O., Gao, X., Borriss, R.: The Rhizobacterium Bacillus amyloliquefaciens subsp. plantarum NAU-B3 Contains a Large Inversion within the Central Portion of the Genome. Genome announcements. 1, e00941-13 (2013).
Wu, Huijun, Qiao, Junqing, Blom, Jochen, Rückert, Christian, Reva, Oleg, Gao, Xuewen, and Borriss, Rainer. “The Rhizobacterium Bacillus amyloliquefaciens subsp. plantarum NAU-B3 Contains a Large Inversion within the Central Portion of the Genome”. Genome announcements 1.6 (2013): e00941-13.

3 Zitationen in Europe PMC

Daten bereitgestellt von Europe PubMed Central.

Key Impact of an Uncommon Plasmid on Bacillus amyloliquefaciens subsp. plantarum S499 Developmental Traits and Lipopeptide Production.
Molinatto G, Franzil L, Steels S, Puopolo G, Pertot I, Ongena M., Front Microbiol 8(), 2017
PMID: 28154555
Comparative Genomic Analysis of Bacillus amyloliquefaciens and Bacillus subtilis Reveals Evolutional Traits for Adaptation to Plant-Associated Habitats.
Zhang N, Yang D, Kendall JR, Borriss R, Druzhinina IS, Kubicek CP, Shen Q, Zhang R., Front Microbiol 7(), 2016
PMID: 28066362
A plasmid-born Rap-Phr system regulates surfactin production, sporulation and genetic competence in the heterologous host, Bacillus subtilis OKB105.
Yang Y, Wu HJ, Lin L, Zhu QQ, Borriss R, Gao XW., Appl Microbiol Biotechnol 99(17), 2015
PMID: 25921807

16 References

Daten bereitgestellt von Europe PubMed Central.

Use of plant-associated Bacillus strains as biofertilizers and biocontrol agents
Borriss R., 2011
Relationship of Bacillus amyloliquefaciens clades associated with strains DSM 7T and FZB42T: a proposal for Bacillus amyloliquefaciens subsp. amyloliquefaciens subsp. nov. and Bacillus amyloliquefaciens subsp. plantarum subsp. nov. based on complete genome sequence comparisons.
Borriss R, Chen XH, Rueckert C, Blom J, Becker A, Baumgarth B, Fan B, Pukall R, Schumann P, Sproer C, Junge H, Vater J, Puhler A, Klenk HP., Int. J. Syst. Evol. Microbiol. 61(Pt 8), 2010
PMID: 20817842
Efficient colonization of plant roots by the plant growth promoting bacterium Bacillus amyloliquefaciens FZB42, engineered to express green fluorescent protein.
Fan B, Chen XH, Budiharjo A, Bleiss W, Vater J, Borriss R., J. Biotechnol. 151(4), 2011
PMID: 21237217
Structural and functional characterization of three polyketide synthase gene clusters in Bacillus amyloliquefaciens FZB 42.
Chen XH, Vater J, Piel J, Franke P, Scholz R, Schneider K, Koumoutsi A, Hitzeroth G, Grammel N, Strittmatter AW, Gottschalk G, Sussmuth RD, Borriss R., J. Bacteriol. 188(11), 2006
PMID: 16707694
Comparative analysis of the complete genome sequence of the plant growth-promoting bacterium Bacillus amyloliquefaciens FZB42.
Chen XH, Koumoutsi A, Scholz R, Eisenreich A, Schneider K, Heinemeyer I, Morgenstern B, Voss B, Hess WR, Reva O, Junge H, Voigt B, Jungblut PR, Vater J, Sussmuth R, Liesegang H, Strittmatter A, Gottschalk G, Borriss R., Nat. Biotechnol. 25(9), 2007
PMID: 17704766
Structural and functional characterization of gene clusters directing nonribosomal synthesis of bioactive cyclic lipopeptides in Bacillus amyloliquefaciens strain FZB42.
Koumoutsi A, Chen XH, Henne A, Liesegang H, Hitzeroth G, Franke P, Vater J, Borriss R., J. Bacteriol. 186(4), 2004
PMID: 14762003
Macrolactin is the polyketide biosynthesis product of the pks2 cluster of Bacillus amyloliquefaciens FZB42.
Schneider K, Chen XH, Vater J, Franke P, Nicholson G, Borriss R, Sussmuth RD., J. Nat. Prod. 70(9), 2007
PMID: 17844999
Tryptophan-dependent production of indole-3-acetic acid (IAA) affects level of plant growth promotion by Bacillus amyloliquefaciens FZB42.
Idris EE, Iglesias DJ, Talon M, Borriss R., Mol. Plant Microbe Interact. 20(6), 2007
PMID: 17555270
More than anticipated - production of antibiotics and other secondary metabolites by Bacillus amyloliquefaciens FZB42.
Chen XH, Koumoutsi A, Scholz R, Borriss R., J. Mol. Microbiol. Biotechnol. 16(1-2), 2008
PMID: 18957859
The complete genome of Bacillus amyloliquefaciens subsp. plantarum CAU B946 contains a gene cluster for nonribosomal synthesis of iturin A.
Blom J, Rueckert C, Niu B, Wang Q, Borriss R., J. Bacteriol. 194(7), 2012
PMID: 22408246
The genome of plant growth-promoting Bacillus amyloliquefaciens subsp. plantarum strain YAU B9601-Y2 contains a gene cluster for mersacidin synthesis.
Hao K, He P, Blom J, Rueckert C, Mao Z, Wu Y, He Y, Borriss R., J. Bacteriol. 194(12), 2012
PMID: 22628498
Draft genome sequence of the biocontrol bacterium Bacillus amyloliquefaciens strain M27.
Lee SY, Kim BY, Ahn JH, Song J, Seol YJ, Kim WG, Weon HY., J. Bacteriol. 194(24), 2012
PMID: 23209201
Genome Sequence of a Plant-Associated Bacterium, Bacillus amyloliquefaciens Strain UCMB5036.
Manzoor S, Niazi A, Bejai S, Meijer J, Bongcam-Rudloff E., Genome Announc 1(2), 2013
PMID: 23516223
Functional analysis and application of the cryptic plasmid pBSG3 harboring the RapQ-PhrQ system in Bacillus amyloliquefaciens B3.
Qiao JQ, Tian DW, Huo R, Wu HJ, Gao XW., Plasmid 65(2), 2010
PMID: 21118702
REGANOR: a gene prediction server for prokaryotic genomes and a database of high quality gene predictions for prokaryotes.
Linke B, McHardy AC, Neuweger H, Krause L, Meyer F., Appl. Bioinformatics 5(3), 2006
PMID: 16922601
GenDB--an open source genome annotation system for prokaryote genomes.
Meyer F, Goesmann A, McHardy AC, Bartels D, Bekel T, Clausen J, Kalinowski J, Linke B, Rupp O, Giegerich R, Puhler A., Nucleic Acids Res. 31(8), 2003
PMID: 12682369
Export

Markieren/ Markierung löschen
Markierte Publikationen

Open Data PUB

Quellen

PMID: 24233590
PubMed | Europe PMC

Suchen in

Google Scholar