PUB - Publikationen an der Universität Bielefeld

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• [72]
  

  2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2957996

  Genome Analyses of the Less Aggressive Rhizoctonia solani AG1-IB Isolates 1/2/21 and O8/2 Compared to the Reference AG1-IB Isolate 7/3/14
  Wibberg D, Genzel F, Verwaaijen B, Blom J, Rupp O, Goesmann A, Zrenner R, Grosch R, Pühler A, Schlüter A (2021)
  Journal of Fungi 7(10): 832.

  PUB | PDF | DOI | WoS | PubMed | Europe PMC
   
• [71]
  

  2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2909153

  Rapid protein alignment in the cloud: HAMOND combines fast DIAMOND alignments with Hadoop parallelism
  Yu J, Blom J, Sczyrba A, Goesmann A (2017)
  Journal of Biotechnology 257: 58-60.

  PUB | PDF | DOI | WoS | PubMed | Europe PMC
   
• [70]
  

  2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2906720

  An assemblage of Frankia Cluster II strains from California contains the canonical nod genes and also the sulfotransferase gene nodH
  Nguyen TV, Wibberg D, Battenberg K, Blom J, Vanden Heuvel B, Berry AM, Kalinowski J, Pawlowski K (2016)
  BMC Genomics 17(1): 796.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [69]
  

  2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2904976

  Complete Chloroplast and Mitochondrial Genome Sequences of the Hydrocarbon Oil-Producing Green MicroalgaBotryococcus brauniiRace B (Showa)
  Blifernez-Klassen O, Wibberg D, Winkler A, Blom J, Goesmann A, Kalinowski J, Kruse O (2016)
  Genome Announcements 4(3): e00524-16.

  PUB | PDF | DOI | WoS | PubMed | Europe PMC
   
• [68]
  

  2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2731279

  Genomic Avenue to Avian Colisepticemia
  Huja S, Oren Y, Trost E, Brzuszkiewicz E, Biran D, Blom J, Goesmann A, Gottschalk G, Hacker J, Ron EZ, Dobrindt U (2015)
  mBio 6(1): e01681-14.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [67]
  

  2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2761035

  Draft Genome Sequence of Pseudomonas aeruginosa Strain WS136, a Highly Cytotoxic ExoS-Positive Wound Isolate Recovered from Pyoderma Gangrenosum
  Arnold M, Wibberg D, Blom J, Schatschneider S, Winkler A, Kutter Y, Rückert C, Albersmeier A, Albaum S, Goesmann A, Zange S, et al. (2015)
  Genome announcements 3(4): e00680-15.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [66]
  

  2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2651944

  Genome Sequence of the Small-Colony Variant Pseudomonas aeruginosa MH27, Isolated from a Chronic Urethral Catheter Infection
  Tielen P, Wibberg D, Blom J, Rosin N, Meyer A-K, Bunk B, Schobert M, Tüpker R, Schatschneider S, Rückert C, Albersmeier A, et al. (2014)
  Genome announcements 2(1).

  PUB | DOI | PubMed | Europe PMC
   
• [65]
  

  2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2658539

  Whole-Genome Sequencing of Erwinia amylovora Strains from Mexico Detects Single Nucleotide Polymorphisms in rpsL Conferring Streptomycin Resistance and in the avrRpt2 Effector Altering Host Interactions
  Smits THM, Guerrero-Prieto VM, Hernández-Escarcega G, Blom J, Goesmann A, Rezzonico F, Duffy B, Stockwell VO (2014)
  Genome announcements 2(1).

  PUB | DOI | PubMed | Europe PMC
   
• [64]
  

  2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2672926

  Genome Sequence of the Acute Urethral Catheter Isolate Pseudomonas aeruginosa MH38
  Wibberg D, Tielen P, Blom J, Rosin N, Schobert M, Tüpker R, Schatschneider S, Spilker D, Albersmeier A, Goesmann A, Vorhölter F-J, et al. (2014)
  Genome announcements 2(2): e00161-14.

  PUB | PDF | DOI | PubMed | Europe PMC
   
• [63]
  

  2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2582332

  Complete Genome Sequence of Corynebacterium urealyticum Strain DSM 7111, Isolated from a 9-Year-Old Patient with Alkaline-Encrusted Cystitis
  Guimarães LC, Soares SC, Albersmeier A, Blom J, Jaenicke S, Azevedo V, Soriano F, Tauch A, Trost E (2013)
  Genome announcements 1(3): e00264-13.

  PUB | DOI | PubMed | Europe PMC
   
• [62]
  

  2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2552500

  The Pan-Genome of the Animal Pathogen Corynebacterium pseudotuberculosis Reveals Differences in Genome Plasticity between the Biovar ovis and equi Strains
  Soares SC, Silva A, Trost E, Blom J, Ramos R, Carneiro A, Ali A, Santos AR, Pinto AC, Diniz C, Barbosa EGV, et al. (2013)
  PLoS ONE 8(1): e53818.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [61]
  

  2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2635520

  Genome Analysis Coupled with Physiological Studies Reveals a Diverse Nitrogen Metabolism in Methylocystis sp Strain SC2
  Dam B, Dam S, Blom J, Liesack W (2013)
  Plos One 8(10): e74767.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [60]
  

  2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2637220

  The Rhizobacterium Bacillus amyloliquefaciens subsp. plantarum NAU-B3 Contains a Large Inversion within the Central Portion of the Genome
  Wu H, Qiao J, Blom J, Rückert C, Reva O, Gao X, Borriss R (2013)
  Genome announcements 1(6): e00941-13.

  PUB | DOI | PubMed | Europe PMC
   
• [59]
  

  2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2607974

  Polymyxin P is the active principle in suppressing phytopathogenic Erwinia spp. by the biocontrol rhizobacterium Paenibacillus polymyxa M-1
  Niu B, Vater J, Rückert C, Blom J, Lehmann M, Ru J-J, Chen X-H, Wang Q, Borriss R (2013)
  BMC microbiology 13(1): 137.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [58]
  

  2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2555342

  Genome sequence of the plant growth promoting strain Bacillus amyloliquefaciens subsp. plantarum B9601-Y2 and expression of mersacidin and other secondary metabolites
  He P, Hao K, Blom J, Rückert C, Vater J, Mao Z, Wu Y, Hou M, He P, He Y, Borriss R (2013)
  Journal of biotechnology 164(2): 281-291.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [57]
  

  2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2602756

  Phylogenetic position and virulence apparatus of the pear flower necrosis pathogen Erwinia piriflorinigrans CFBP 5888(T) as assessed by comparative genomics
  Smits THM, Rezzonico F, López MM, Blom J, Goesmann A, Frey JE, Duffy B (2013)
  Systematic and applied microbiology 36(7): 449-456.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [56]
  

  2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2633427

  Draft Genome Sequence of Sinorhizobium meliloti RU11/001, a model organism for flagellum structure, motility and chemotaxis
  Wibberg D, Blom J, Rückert C, Winkler A, Albersmeier A, Pühler A, Schlüter A, Scharf BE (2013)
  Journal of Biotechnology 168(4): 731-733.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [55]
  

  2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2622238

  Complete sequence of Erwinia piriflorinigrans plasmids pEPIR37 and pEPIR5 and role of pEPIR37 in pathogen virulence
  Barbe S, Llop P, Blom J, Cabrefiga J, Goesmann A, Duffy B, Montesinos E, Smits THM, Lopez MM (2013)
  Plant Pathology 62(4): 786-798.

  PUB | DOI | WoS
   
• [54]
  

  2013 | Bielefelder E-Dissertation | PUB-ID: 2604883

  Comparative genomics on gene and single nucleotide level
  Blom J (2013)
  Bielefeld: Universitätsbibliothek.

  PUB | PDF
   
• [53]
  

  2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2558460

  Whole Genome Sequencing versus Traditional Genotyping for Investigation of a Mycobacterium tuberculosis Outbreak: A Longitudinal Molecular Epidemiological Study
  Roetzer A, Diel R, Kohl TA, Rückert C, Nübel U, Blom J, Wirth T, Jaenicke S, Schuback S, Rüsch-Gerdes S, Supply P, et al. (2013)
  PLoS medicine 10(2): e1001387.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [52]
  

  2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2576539

  The noncanonical type III secretion system of Xanthomonas translucens pv. graminis is essential for forage grass infection
  Wichmann F, Vorhölter F-J, Hersemann L, Widmer F, Blom J, Niehaus K, Reinhard S, Conradin C, Kölliker R (2013)
  Molecular plant pathology 14(6): 576-588.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [51]
  

  2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2635526

  Draft genome sequence of the cellulolytic Clostridium thermocellum wild-type strain BC1 playing a role in cellulosic biomass degradation
  Koeck DE, Wibberg D, Koellmeier T, Blom J, Jaenicke S, Winkler A, Albersmeier A, Zverlov VV, Pühler A, Schwarz WH, Schlüter A (2013)
  Journal of Biotechnology 168(1): 62-63.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [50]
  

  2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2557938

  Comparative Genomics of 12 Strains of Erwinia amylovora Identifies a Pan-Genome with a Large Conserved Core
  Mann RA, Smits THM, Bühlmann A, Blom J, Goesmann A, Frey JE, Plummer KM, Beer SV, Luck J, Duffy B, Rodoni B (2013)
  PLOS ONE 8(2): e55644.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [49]
  

  2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2548286

  Draft whole genome sequence of the cyanide-degrading bacterium Pseudomonas pseudoalcaligenes CECT5344
  Luque-Almagro VM, Acera F, Igeño MI, Wibberg D, Roldán MD, Sáez LP, Hennig M, Quesada A, Huertas MJ, Blom J, Merchán F, et al. (2013)
  Environmental Microbiology 15(1): 253-270.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [48]
  

  2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2553455

  The large universal Pantoea plasmid LPP-1 plays a major role in biological and ecological diversification
  De Maayer P, Chan W-Y, Blom J, Venter SN, Duffy B, Smits THM, Coutinho TA (2012)
  Bmc Genomics 13(1): 625.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [47]
  

  2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2498160

  Complete genome sequence, lifestyle, and multi-drug resistance of the human pathogen Corynebacterium resistens DSM 45100 isolated from blood samples of a leukemia patient
  Schröder J, Maus I, Meyer K, Wördemann S, Blom J, Jaenicke S, Schneider J, Trost E, Tauch A (2012)
  BMC Genomics 13(1): 141.

  PUB | PDF | DOI | WoS | PubMed | Europe PMC
   
• [46]
  

  2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2513347

  Pangenomic Study of Corynebacterium diphtheriae That Provides Insights into the Genomic Diversity of Pathogenic Isolates from Cases of Classical Diphtheria, Endocarditis, and Pneumonia
  Trost E, Blom J, de Castro Soares S, Huang I-H, Al-Dilaimi A, Schröder J, Jaenicke S, Dorella FA, Rocha FS, Miyoshi A, Azevedo V, et al. (2012)
  Journal of bacteriology 194(12): 3199-3215.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [45]
  

  2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2490949

  Identification and Characterization of Microcin S, a New Antibacterial Peptide Produced by Probiotic Escherichia coli G3/10
  Zschuttig A, Zimmermann K, Blom J, Goesmann A, Pohlmann C, Gunzer F (2012)
  PLoS ONE 7(3): e33351.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [44]
  

  2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2527519

  Evaluation of qPCR curve analysis methods for reliable biomarker discovery: Bias, resolution, precision, and implications
  Ruijter JM, Pfaffl MW, Zhao S, Spiess AN, Boggy G, Blom J, Rutledge RG, Sisti D, Lievens A, De Preter K, Derveaux S, et al. (2012)
  Methods. A companion to methods in enzymology (San Diego, Calif.) 59(1): 32-46.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [43]
  

  2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2530221

  The genome sequence of the bacterium Streptomyces davawensis JCM 4913 and heterologous production of the unique antibiotic roseoflavin
  Jankowitsch F, Schwarz J, Rückert C, Gust B, Szczepanowski R, Blom J, Pelzer S, Kalinowski J, Mack M (2012)
  Journal of bacteriology 194(24): 6818-6827.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [42]
  

  2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2490535

  Insights into the completely annotated genome of Lactobacillus buchneri CD034, a strain isolated from stable grass silage
  Heinl S, Wibberg D, Eikmeyer FG, Szczepanowski R, Blom J, Linke B, Goesmann A, Grabherr R, Schwab H, Pühler A, Schlüter A (2012)
  Journal of Biotechnology 161(2): 153-166.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [41]
  

  2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2513256

  Genome Sequence of Fibrella aestuarina BUZ 2T, a Filamentous Marine Bacterium
  Filippini M, Qi W, Blom J, Goesmann A, Smits THM, Bagheri HC (2012)
  Journal of bacteriology 194(13): 3555.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [40]
  

  2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2487853

  Comparative genomic analysis of Salmonella enterica subsp. enterica serovar Weltevreden foodborne strains with other serovars
  Brankatschk K, Blom J, Goesmann A, Smits THM, Duffy B (2012)
  International journal of food microbiology 155(3): 247-256.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [39]
  

  2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2486204

  The Complete Genome of Bacillus amyloliquefaciens subsp. plantarum CAU B946 Contains a Gene Cluster for Nonribosomal Synthesis of Iturin A
  Blom J, Rückert C, Niu B, Wang Q, Borriss R (2012)
  Journal of bacteriology 194(7): 1845-1846.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [38]
  

  2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2544774

  Draft Genome Sequence of Wickerhamomyces ciferrii NRRL Y-1031 F-60-10
  Schneider J, Andrea H, Blom J, Jaenicke S, Rückert C, Schorsch C, Szczepanowski R, Farwick M, Goesmann A, Pühler A, Schaffer S, et al. (2012)
  Eukaryotic Cell 11(12): 1582-1583.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [37]
  

  2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2542210

  Sequence of Two Plasmids from Clostridium perfringens Chicken Necrotic Enteritis Isolates and Comparison with C. perfringens Conjugative Plasmids
  Parreira VR, Costa M, Eikmeyer FG, Blom J, Prescott JF (2012)
  PLoS ONE 7(11): e49753.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [36]
  

  2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2501081

  Complete genome sequence of clinical isolate Pantoea ananatis LMG 5342
  De Maayer P, Chan WY, Rezzonico F, Bühlmann A, Venter SN, Blom J, Goesmann A, Frey JE, Smits THM, Duffy B, Coutinho TA (2012)
  Journal of Bacteriology 194(6): 1615-1616.

  PUB | DOI | WoS | PubMed | Europe PMC | GenBank
   
• [35]
  

  2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2526269

  Complete genome sequence of Saccharothrix espanaensis DSM 44229T and comparison to the other completely sequenced Pseudonocardiaceae
  Strobel T, Al-Dilaimi A, Blom J, Gessner A, Kalinowski J, Luzhetska M, Pühler A, Szczepanowski R, Bechthold A, Rückert C (2012)
  BMC Genomics 13(1): 465.

  PUB | PDF | DOI | WoS | PubMed | Europe PMC
   
• [34]
  

  2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2529610

  Genome Sequence of a Neisseria meningitidis Capsule Null Locus Strain from the Clonal Complex of Sequence Type 198
  Schork S, Schlüter A, Blom J, Schneiker-Bekel S, Pühler A, Goesmann A, Frosch M, Schoen C (2012)
  Journal of Bacteriology 194(18): 5144-5145.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [33]
  

  2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2526281

  Complete Genome Sequence of the Porcine Isolate Enterococcus faecalis D32
  Zischka M, Kuenne C, Blom J, Dabrowski PW, Linke B, Hain T, Nitsche A, Goesmann A, Larsen J, Jensen LB, Witte W, et al. (2012)
  Journal of Bacteriology 194(19): 5490-5491.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [32]
  

  2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2526298

  Complete Genome Sequence of the Hydrogenotrophic, Methanogenic Archaeon Methanoculleus bourgensis Strain MS2T, Isolated from a Sewage Sludge Digester
  Maus I, Wibberg D, Stantscheff R, Eikmeyer FG, Seffner A, Boelter J, Szczepanowski R, Blom J, Jaenicke S, König H, Pühler A, et al. (2012)
  Journal of Bacteriology 194(19): 5487-5488.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [31]
  

  2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2502106

  The Genome of Plant Growth-Promoting Bacillus amyloliquefaciens subsp. plantarum Strain YAU B9601-Y2 Contains a Gene Cluster for Mersacidin Synthesis
  Hao K, He P, Blom J, Rückert C, Mao Z, Wu Y, He Y, Borriss R (2012)
  Journal of bacteriology 194(12): 3264-3265.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [30]
  

  2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2500946

  Comparative analysis of the Hrp pathogenicity island of Rubus- and Spiraeoideae-infecting Erwinia amylovora strains identifies the IT region as a remnant of an integrative conjugative element
  Mann RA, Blom J, Bühlmann A, Plummer KM, Beer SV, Luck JE, Goesmann A, Frey JE, Rodoni BC, Duffy B, Smits THM (2012)
  Gene 504(1): 6-12.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [29]
  

  2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2394493

  Complete genome and comparative analysis of Streptococcus gallolyticus subsp gallolyticus, an emerging pathogen of infective endocarditis
  Hinse D, Vollmer T, Rückert C, Blom J, Kalinowski J, Knabbe C, Dreier J (2011)
  BMC Genomics 12(1): 400.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [28]
  

  2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2093398

  Genome of a European Fresh-Vegetable Food Safety Outbreak Strain of Salmonella enterica subsp enterica Serovar Weltevreden
  Brankatschk K, Blom J, Goesmann A, Smits THM, Duffy B (2011)
  Journal of Bacteriology 193(8): 2066.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [27]
  

  2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2375634

  The ubiquitous plasmid pXap41 in the invasive phytopathogen Xanthomonas arboricola pv. pruni: complete sequence and comparative genomic analysis
  Pothier JF, Vorhölter F-J, Blom J, Goesmann A, Pühler A, Smits TH, Duffy B (2011)
  FEMS Microbiology Letters 323(1): 52-60.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [26]
  

  2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2404767

  The Genome of the Plant Growth-Promoting Rhizobacterium Paenibacillus polymyxa M-1 Contains Nine Sites Dedicated to Nonribosomal Synthesis of Lipopeptides and Polyketides.
  Niu B, Rückert C, Blom J, Wang Q, Borriss R (2011)
  Journal of Bacteriology 193(20): 5862-5863.

  PUB | DOI | Download (ext.) | WoS | PubMed | Europe PMC
   
• [25]
  

  2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2354731

  Complete genome sequencing of Agrobacterium sp. H13-3, the former Rhizobium lupini H13-3, reveals a tripartite genome consisting of a circular and a linear chromosome and an accessory plasmid but lacking a tumor-inducing Ti-plasmid
  Wibberg D, Blom J, Jaenicke S, Kollin F, Rupp O, Scharf B, Schneiker-Bekel S, Szczepanowski R, Goesmann A, Setubal JC, Schmitt R, et al. (2011)
  Journal of Biotechnology 155(1): 50-62.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [24]
  

  2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2326511

  Genome sequence of B. amyloliquefaciens type strain DSM7(T) reveals differences to plant-associated B. amyloliquefaciens FZB42
  Rückert C, Blom J, Chen XH, Reva O, Borriss R (2011)
  Journal of Biotechnology 155(1): 78-85.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [23]
  

  2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2375954

  Relationship of Bacillus amyloliquefaciens clades associated with strains DSM 7T and FZB42T: a proposal for Bacillus amyloliquefaciens subsp. amyloliquefaciens subsp. nov. and Bacillus amyloliquefaciens subsp. plantarum subsp. nov. based on complete genome sequence comparisons
  Borriss R, Chen X-H, Rückert C, Blom J, Becker A, Baumgarth B, Fan B, Pukall R, Schumann P, Sproer C, Junge H, et al. (2011)
  Int J Syst Evol Microbiol 61(8): 1786-1801.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [22]
  

  2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2472468

  Erwinia amylovora novel plasmid pEI70: Complete sequence, biogeography, and role in aggressiveness in the fire blight phytopathogen
  Llop P, Cabrefiga J, Smits THM, Dreo T, Barbé S, Pulawska J, Bultreys A, Blom J, Duffy B, Montesinos E, Lopez MM (2011)
  PLoS one 6(12): e28651.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [21]
  

  2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2326445

  RAPYD - Rapid Annotation Platform for Yeast Data
  Schneider J, Blom J, Jaenicke S, Linke B, Brinkrolf K, Neuweger H, Tauch A, Goesmann A (2011)
  Journal of Biotechnology 155(1): 118-126.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [20]
  

  2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2307104

  Metabolic Versatility and Antibacterial Metabolite Biosynthesis Are Distinguishing Genomic Features of the Fire Blight Antagonist Pantoea vagans C9-1
  Smits THM, Rezzonico F, Kamber T, Blom J, Goesmann A, Ishimaru CA, Frey JE, Stockwell VO, Duffy B (2011)
  PLoS ONE 6(7): e22247.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [19]
  

  2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2326455

  RhizoRegNet-A database of rhizobial transcription factors and regulatory networks
  Krol E, Blom J, Winnebald J, Berhoerster A, Barnett MJ, Goesmann A, Baumbach J, Becker A (2011)
  Journal of Biotechnology 155(1): 127-134.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [18]
  

  2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2326518

  Sequencing and comparative analysis of IncP-1 alpha antibiotic resistance plasmids reveal a highly conserved backbone and differences within accessory regions
  Szczepanowski R, Eikmeyer FG, Harfmann J, Blom J, Rogers LM, Top EM, Schlüter A (2011)
  Journal of Biotechnology 155(1): 95-103.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [17]
  

  2011 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2382565

  Whole Genome Sequence Comparisons in Taxonomy
  Borriss R, Rückert C, Blom J, Bezuidt O, Reva O, Klenk HP (2011)
  In: Taxonomy of Prokaryotes (Methods in Microbiology). Rainey F, Oren A (Eds); Methods in microbiology, 38. Waltham, MA, USA: Academic Press,: 473.

  PUB | DOI | WoS
   
• [16]
  

  2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2290032

  Virulence Evolution of the Human Pathogen Neisseria meningitidis by Recombination in the Core and Accessory Genome
  Joseph B, Schwarz RF, Linke B, Blom J, Becker A, Claus H, Goesmann A, Frosch M, Mueller T, Vogel U, Schoen C (2011)
  PLoS ONE 6(4): e18441.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [15]
  

  2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2093389

  Whole-Genome Sequence of the Transformable Neisseria meningitidis Serogroup A Strain WUE2594
  Schoen C, Weber-Lehmann J, Blom J, Joseph B, Goesmann A, Strittmatter A, Frosch M (2011)
  Journal of Bacteriology 193(8): 2064-2065.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [14]
  

  2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2289952

  Exact and complete short-read alignment to microbial genomes using Graphics Processing Unit programming
  Blom J, Jakobi T, Doppmeier D, Jaenicke S, Kalinowski J, Stoye J, Goesmann A (2011)
  Bioinformatics 27(10): 1351-1358.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [13]
  

  2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2289928

  Comparative genomics of Lactobacillus
  Kant R, Blom J, Palva A, Siezen RJ, de Vos WM (2011)
  Microbial Biotechnology 4(3): 323-332.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [12]
  

  2011 | Zeitschriftenaufsatz | Im Druck | PUB-ID: 2017892

  The complete genome sequence of the dominant Sinorhizobium meliloti field isolate SM11 extends the S. meliloti pan-genome
  Schneiker-Bekel S, Wibberg D, Bekel T, Blom J, Linke B, Neuweger H, Stiens M, Vorhölter F-J, Weidner S, Goesmann A, Pühler A, et al. (In Press)
  Journal of Biotechnology 155(1): 20-33.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [11]
  

  2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2087955

  Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering
  Hackl M, Jakobi T, Blom J, Doppmeier D, Brinkrolf K, Szczepanowski R, Bernhart SH, Höner zu Siederdissen C, Bort JAH, Wieser M, Kunert R, et al. (2011)
  Journal of Biotechnology 153(1-2): 62-75.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [10]
  

  2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2036058

  Symbiotic properties and first analyses of the genomic sequence of the fast growing model strain Sinorhizobium fredii HH103 nodulating soybean
  Margaret I, Becker A, Blom J, Bonilla I, Goesmann A, Göttfert M, Lloret J, Mittard-Runte V, Rückert C, Ruiz-Sainz J-E, Vinardell JM, et al. (2011)
  Journal of Biotechnology 155(1): 11-19.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [9]
  

  2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2003418

  Genome Sequence of an Erwinia amylovora Strain with Pathogenicity Restricted to Rubus Plants
  Powney R, Smits THM, Sawbridge T, Frey B, Blom J, Frey JE, Plummer KM, Beer SV, Luck J, Duffy B, Rodoni B (2011)
  Journal of Bacteriology 193(3): 785-786.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [8]
  

  2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1929692

  CARMEN - Comparative Analysis and in silico Reconstruction of organism-specific MEtabolic Networks
  Schneider J, Vorhölter F-J, Trost E, Blom J, Musa YR, Neuweger H, Niehaus K, Schatschneider S, Tauch A, Goesmann A (2010)
  Genetics and Molecular Research 9(3): 1660-1672.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [7]
  

  2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1785275

  Complete genome sequence and lifestyle of black-pigmented Corynebacterium aurimucosum ATCC 700975 (formerly C. nigricans CN-1) isolated from a vaginal swab of a woman with spontaneous abortion
  Trost E, Götker S, Schneider J, Schneiker-Bekel S, Szczepanowski R, Tilker A, Viehöver P, Arnold W, Bekel T, Blom J, Gartemann K-H, et al. (2010)
  BMC Genomics 11(1): 91.

  PUB | PDF | DOI | WoS | PubMed | Europe PMC
   
• [6]
  

  2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1796445

  Complete Genome Sequence of the Fire Blight Pathogen Erwinia amylovora CFBP 1430 and Comparison to Other Erwinia spp.
  Smits THM, Rezzonico F, Kamber T, Blom J, Goesmann A, Frey JE, Duffy B (2010)
  MOLECULAR PLANT-MICROBE INTERACTIONS 23(4): 384-393.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [5]
  

  2010 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 1894907

  Practical Guide: Genomic Techniques and How to Apply Them to Marine Questions
  Mittard-Runte V, Bekel T, Blom J, Dondrup M, Henckel K, Jaenicke S, Krause L, Linke B, Neuweger H, Schneiker-Bekel S, Goesmann A (2010)
  In: Introduction to Marine Genomics (Advances in Marine Genomics). Cock JM, Tessmar-Raible K, Boyen C, Viard F (Eds); , 1. Netherlands: Springer Netherlands: 315-396.

  PUB | DOI
   
• [4]
  

  2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1930110

  Comparative Genome Biology of a Serogroup B Carriage and Disease Strain Supports a Polygenic Nature of Meningococcal Virulence
  Joseph B, Schneiker-Bekel S, Schramm-Glueck A, Blom J, Claus H, Linke B, Schwarz RF, Becker A, Goesmann A, Frosch M, Schoen C (2010)
  JOURNAL OF BACTERIOLOGY 192(20): 5363-5377.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [3]
  

  2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1783187

  EDGAR: a software framework for the comparative analysis of prokaryotic genomes
  Blom J, Albaum S, Doppmeier D, Pühler A, Vorhölter F-J, Zakrzewski M, Goesmann A (2009)
  BMC Bioinformatics 10(1): 154.

  PUB | PDF | DOI | WoS | PubMed | Europe PMC
   
• [2]
  

  2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1592257

  Whole-genome comparison of disease and carriage strains provides insights into virulence evolution in Neisseria meningitidis
  Schoen C, Blom J, Claus H, Schramm-Glueck A, Brandt P, Mueller T, Goesmann A, Joseph B, Konietzny S, Kurzai O, Schmitt C, et al. (2008)
  PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 105(9): 3473-3478.

  PUB | DOI | WoS | PubMed | Europe PMC | GenBank
   
• [1]
  

  2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1585939

  Ultrafast pyrosequencing of Corynebacterium kroppenstedtii DSM44385 revealed insights into the physiology of a lipophilic corynebacterium that lacks mycolic acids
  Tauch A, Schneider J, Szczepanowski R, Tilker A, Viehöver P, Gartemann K-H, Arnold W, Blom J, Brinkrolf K, Brune I, Goetker S, et al. (2008)
  Journal of Biotechnology 136(1-2): 22-30.

  PUB | DOI | WoS | PubMed | Europe PMC