The Pan-Genome of the Animal Pathogen Corynebacterium pseudotuberculosis Reveals Differences in Genome Plasticity between the Biovar ovis and equi Strains

Soares SC, Silva A, Trost E, Blom J, Ramos R, Carneiro A, Ali A, Santos AR, Pinto AC, Diniz C, Barbosa EGV, et al. (2013)
PLoS ONE 8(1): e53818.

Zeitschriftenaufsatz | Veröffentlicht | Englisch
 
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Autor*in
Soares, S.C.; Silva, A.; Trost, EvaUniBi ; Blom, JochenUniBi; Ramos, R.; Carneiro, A.; Ali, A.; Santos, A.R.; Pinto, A.C.; Diniz, C.; Barbosa, E.G.V.; Dorella, F.A.
Alle
Abstract / Bemerkung
Corynebacterium pseudotuberculosis is a facultative intracellular pathogen and the causative agent of several infectious and contagious chronic diseases, including caseous lymphadenitis, ulcerative lymphangitis, mastitis, and edematous skin disease, in a broad spectrum of hosts. In addition, Corynebacterium pseudotuberculosis infections pose a rising worldwide economic problem in ruminants. The complete genome sequences of 15 C. pseudotuberculosis strains isolated from different hosts and countries were comparatively analyzed using a pan-genomic strategy. Phylogenomic, pan-genomic, core genomic, and singleton analyses revealed close relationships among pathogenic corynebacteria, the clonal-like behavior of C. pseudotuberculosis and slow increases in the sizes of pan-genomes. According to extrapolations based on the pan-genomes, core genomes and singletons, the C. pseudotuberculosis biovar ovis shows a more clonal-like behavior than the C. pseudotuberculosis biovar equi. Most of the variable genes of the biovar ovis strains were acquired in a block through horizontal gene transfer and are highly conserved, whereas the biovar equi strains contain great variability, both intra- and inter-biovar, in the 16 detected pathogenicity islands (PAIs). With respect to the gene content of the PAIs, the most interesting finding is the high similarity of the pilus genes in the biovar ovis strains compared with the great variability of these genes in the biovar equi strains. Concluding, the polymerization of complete pilus structures in biovar ovis could be responsible for a remarkable ability of these strains to spread throughout host tissues and penetrate cells to live intracellularly, in contrast with the biovar equi, which rarely attacks visceral organs. Intracellularly, the biovar ovis strains are expected to have less contact with other organisms than the biovar equi strains, thereby explaining the significant clonal-like behavior of the biovar ovis strains.
Erscheinungsjahr
2013
Zeitschriftentitel
PLoS ONE
Band
8
Ausgabe
1
Art.-Nr.
e53818
ISSN
1932-6203
Page URI
https://pub.uni-bielefeld.de/record/2552500

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Soares SC, Silva A, Trost E, et al. The Pan-Genome of the Animal Pathogen Corynebacterium pseudotuberculosis Reveals Differences in Genome Plasticity between the Biovar ovis and equi Strains. PLoS ONE. 2013;8(1): e53818.
Soares, S. C., Silva, A., Trost, E., Blom, J., Ramos, R., Carneiro, A., Ali, A., et al. (2013). The Pan-Genome of the Animal Pathogen Corynebacterium pseudotuberculosis Reveals Differences in Genome Plasticity between the Biovar ovis and equi Strains. PLoS ONE, 8(1), e53818. doi:10.1371/journal.pone.0053818
Soares, S.C., Silva, A., Trost, Eva, Blom, Jochen, Ramos, R., Carneiro, A., Ali, A., et al. 2013. “The Pan-Genome of the Animal Pathogen Corynebacterium pseudotuberculosis Reveals Differences in Genome Plasticity between the Biovar ovis and equi Strains”. PLoS ONE 8 (1): e53818.
Soares, S. C., Silva, A., Trost, E., Blom, J., Ramos, R., Carneiro, A., Ali, A., Santos, A. R., Pinto, A. C., Diniz, C., et al. (2013). The Pan-Genome of the Animal Pathogen Corynebacterium pseudotuberculosis Reveals Differences in Genome Plasticity between the Biovar ovis and equi Strains. PLoS ONE 8:e53818.
Soares, S.C., et al., 2013. The Pan-Genome of the Animal Pathogen Corynebacterium pseudotuberculosis Reveals Differences in Genome Plasticity between the Biovar ovis and equi Strains. PLoS ONE, 8(1): e53818.
S.C. Soares, et al., “The Pan-Genome of the Animal Pathogen Corynebacterium pseudotuberculosis Reveals Differences in Genome Plasticity between the Biovar ovis and equi Strains”, PLoS ONE, vol. 8, 2013, : e53818.
Soares, S.C., Silva, A., Trost, E., Blom, J., Ramos, R., Carneiro, A., Ali, A., Santos, A.R., Pinto, A.C., Diniz, C., Barbosa, E.G.V., Dorella, F.A., Aburjaile, F., Rocha, F.S., Nascimento, K.K.F., Guimares, L.C., Almeida, S., Hassan, S.S., Bakhtiar, S.M., Pereira, U.P., Abreu, V.A.C., Schneider, M.P.C., Miyoshi, A., Tauch, A., Azevedo, V.: The Pan-Genome of the Animal Pathogen Corynebacterium pseudotuberculosis Reveals Differences in Genome Plasticity between the Biovar ovis and equi Strains. PLoS ONE. 8, : e53818 (2013).
Soares, S.C., Silva, A., Trost, Eva, Blom, Jochen, Ramos, R., Carneiro, A., Ali, A., Santos, A.R., Pinto, A.C., Diniz, C., Barbosa, E.G.V., Dorella, F.A., Aburjaile, F., Rocha, F.S., Nascimento, K.K.F., Guimares, L.C., Almeida, S., Hassan, S.S., Bakhtiar, S.M., Pereira, U.P., Abreu, V.A.C., Schneider, M.P.C., Miyoshi, A., Tauch, Andreas, and Azevedo, V. “The Pan-Genome of the Animal Pathogen Corynebacterium pseudotuberculosis Reveals Differences in Genome Plasticity between the Biovar ovis and equi Strains”. PLoS ONE 8.1 (2013): e53818.

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Silva A, Schneider MP, Cerdeira L, Barbosa MS, Ramos RT, Carneiro AR, Santos R, Lima M, D'Afonseca V, Almeida SS, Santos AR, Soares SC, Pinto AC, Ali A, Dorella FA, Rocha F, de Abreu VA, Trost E, Tauch A, Shpigel N, Miyoshi A, Azevedo V., J. Bacteriol. 193(1), 2010
PMID: 21037006
Complete genome sequence of Corynebacterium pseudotuberculosis strain CIP 52.97, isolated from a horse in Kenya.
Cerdeira LT, Schneider MP, Pinto AC, de Almeida SS, dos Santos AR, Barbosa EG, Ali A, Aburjaile FF, de Abreu VA, Guimaraes LC, Soares Sde C, Dorella FA, Rocha FS, Bol E, Gomes de Sa PH, Lopes TS, Barbosa MS, Carneiro AR, Juca Ramos RT, Coimbra NA, Lima AR, Barh D, Jain N, Tiwari S, Raja R, Zambare V, Ghosh P, Trost E, Tauch A, Miyoshi A, Azevedo V, Silva A., J. Bacteriol. 193(24), 2011
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Genome sequence of the Corynebacterium pseudotuberculosis Cp316 strain, isolated from the abscess of a Californian horse.
Ramos RT, Silva A, Carneiro AR, Pinto AC, Soares Sde C, Santos AR, Almeida SS, Guimaraes LC, Aburjaile FF, Barbosa EG, Dorella FA, Rocha FS, Cerdeira LT, Barbosa MS, Tauch A, Edman J, Spier S, Miyoshi A, Schneider MP, Azevedo V., J. Bacteriol. 194(23), 2012
PMID: 23144380

AUTHOR UNKNOWN, 0

AUTHOR UNKNOWN, 0
Complete genome sequence of Corynebacterium pseudotuberculosis strain 1/06-A, isolated from a horse in North America.
Pethick FE, Lainson AF, Yaga R, Flockhart A, Smith DG, Donachie W, Cerdeira LT, Silva A, Bol E, Lopes TS, Barbosa MS, Pinto AC, Dos Santos AR, Soares SC, Almeida SS, Guimaraes LC, Aburjaile FF, Abreu VA, Ribeiro D, Fiaux KK, Diniz CA, Barbosa EG, Pereira UP, Hassan SS, Ali A, Bakhtiar SM, Dorella FA, Carneiro AR, Ramos RT, Rocha FS, Schneider MP, Miyoshi A, Azevedo V, Fontaine MC., J. Bacteriol. 194(16), 2012
PMID: 22843601
Whole-genome sequence of Corynebacterium pseudotuberculosis strain Cp162, isolated from camel.
Hassan SS, Schneider MP, Ramos RT, Carneiro AR, Ranieri A, Guimaraes LC, Ali A, Bakhtiar SM, Pereira Ude P, dos Santos AR, Soares Sde C, Dorella F, Pinto AC, Ribeiro D, Barbosa MS, Almeida S, Abreu V, Aburjaile F, Fiaux K, Barbosa E, Diniz C, Rocha FS, Saxena R, Tiwari S, Zambare V, Ghosh P, Pacheco LG, Dowson CG, Kumar A, Barh D, Miyoshi A, Azevedo V, Silva A., J. Bacteriol. 194(20), 2012
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Complete genome sequence of Corynebacterium pseudotuberculosis Cp31, isolated from an Egyptian buffalo.
Silva A, Ramos RT, Ribeiro Carneiro A, Cybelle Pinto A, de Castro Soares S, Rodrigues Santos A, Silva Almeida S, Guimaraes LC, Figueira Aburjaile F, Vieira Barbosa EG, Alves Dorella F, Souza Rocha F, Souza Lopes T, Kawasaki R, Gomes Sa P, da Rocha Coimbra NA, Teixeira Cerdeira L, Silvanira Barbosa M, Cruz Schneider MP, Miyoshi A, Selim SA, Moawad MS, Azevedo V., J. Bacteriol. 194(23), 2012
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Application of phylogenetic networks in evolutionary studies.
Huson DH, Bryant D., Mol. Biol. Evol. 23(2), 2005
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Drawing explicit phylogenetic networks and their integration into SplitsTree.
Kloepper TH, Huson DH., BMC Evol. Biol. 8(), 2008
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EDGAR: a software framework for the comparative analysis of prokaryotic genomes.
Blom J, Albaum SP, Doppmeier D, Puhler A, Vorholter FJ, Zakrzewski M, Goesmann A., BMC Bioinformatics 10(), 2009
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GenDB--an open source genome annotation system for prokaryote genomes.
Meyer F, Goesmann A, McHardy AC, Bartels D, Bekel T, Clausen J, Kalinowski J, Linke B, Rupp O, Giegerich R, Puhler A., Nucleic Acids Res. 31(8), 2003
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Genome analysis of multiple pathogenic isolates of Streptococcus agalactiae: implications for the microbial "pan-genome".
Tettelin H, Masignani V, Cieslewicz MJ, Donati C, Medini D, Ward NL, Angiuoli SV, Crabtree J, Jones AL, Durkin AS, Deboy RT, Davidsen TM, Mora M, Scarselli M, Margarit y Ros I, Peterson JD, Hauser CR, Sundaram JP, Nelson WC, Madupu R, Brinkac LM, Dodson RJ, Rosovitz MJ, Sullivan SA, Daugherty SC, Haft DH, Selengut J, Gwinn ML, Zhou L, Zafar N, Khouri H, Radune D, Dimitrov G, Watkins K, O'Connor KJ, Smith S, Utterback TR, White O, Rubens CE, Grandi G, Madoff LC, Kasper DL, Telford JL, Wessels MR, Rappuoli R, Fraser CM., Proc. Natl. Acad. Sci. U.S.A. 102(39), 2005
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Tettelin H, Riley D, Cattuto C, Medini D., Curr. Opin. Microbiol. 11(5), 2008
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Comparing thousands of circular genomes using the CGView Comparison Tool.
Grant JR, Arantes AS, Stothard P., BMC Genomics 13(), 2012
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PIPS: pathogenicity island prediction software.
Soares SC, Abreu VA, Ramos RT, Cerdeira L, Silva A, Baumbach J, Trost E, Tauch A, Hirata R Jr, Mattos-Guaraldi AL, Miyoshi A, Azevedo V., PLoS ONE 7(2), 2012
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Carver TJ, Rutherford KM, Berriman M, Rajandream MA, Barrell BG, Parkhill J., Bioinformatics 21(16), 2005
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Comparative complete genome sequence analysis of the amino acid replacements responsible for the thermostability of Corynebacterium efficiens.
Nishio Y, Nakamura Y, Kawarabayasi Y, Usuda Y, Kimura E, Sugimoto S, Matsui K, Yamagishi A, Kikuchi H, Ikeo K, Gojobori T., Genome Res. 13(7), 2003
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Complete genome sequence, lifestyle, and multi-drug resistance of the human pathogen Corynebacterium resistens DSM 45100 isolated from blood samples of a leukemia patient.
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The lifestyle of Corynebacterium urealyticum derived from its complete genome sequence established by pyrosequencing.
Tauch A, Trost E, Tilker A, Ludewig U, Schneiker S, Goesmann A, Arnold W, Bekel T, Brinkrolf K, Brune I, Gotker S, Kalinowski J, Kamp PB, Lobo FP, Viehoever P, Weisshaar B, Soriano F, Droge M, Puhler A., J. Biotechnol. 136(1-2), 2008
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Complete genome sequence and lifestyle of black-pigmented Corynebacterium aurimucosum ATCC 700975 (formerly C. nigricans CN-1) isolated from a vaginal swab of a woman with spontaneous abortion.
Trost E, Gotker S, Schneider J, Schneiker-Bekel S, Szczepanowski R, Tilker A, Viehoever P, Arnold W, Bekel T, Blom J, Gartemann KH, Linke B, Goesmann A, Puhler A, Shukla SK, Tauch A., BMC Genomics 11(), 2010
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Pathogenicity islands in bacterial pathogenesis.
Schmidt H, Hensel M., Clin. Microbiol. Rev. 17(1), 2004
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Heterogeneity of diphtheria toxin gene, tox, and its regulatory element, dtxR, in Corynebacterium diphtheriae strains causing epidemic diphtheria in Russia and Ukraine.
Nakao H, Pruckler JM, Mazurova IK, Narvskaia OV, Glushkevich T, Marijevski VF, Kravetz AN, Fields BS, Wachsmuth IK, Popovic T., J. Clin. Microbiol. 34(7), 1996
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AUTHOR UNKNOWN, 0
Biology and molecular epidemiology of diphtheria toxin and the tox gene.
Holmes RK., J. Infect. Dis. 181 Suppl 1(), 2000
PMID: 10657208
Corynebacterium ulcerans 0102 carries the gene encoding diphtheria toxin on a prophage different from the C. diphtheriae NCTC 13129 prophage.
Sekizuka T, Yamamoto A, Komiya T, Kenri T, Takeuchi F, Shibayama K, Takahashi M, Kuroda M, Iwaki M., BMC Microbiol. 12(), 2012
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Pangenomic study of Corynebacterium diphtheriae that provides insights into the genomic diversity of pathogenic isolates from cases of classical diphtheria, endocarditis, and pneumonia.
Trost E, Blom J, Soares Sde C, Huang IH, Al-Dilaimi A, Schroder J, Jaenicke S, Dorella FA, Rocha FS, Miyoshi A, Azevedo V, Schneider MP, Silva A, Camello TC, Sabbadini PS, Santos CS, Santos LS, Hirata R Jr, Mattos-Guaraldi AL, Efstratiou A, Schmitt MP, Ton-That H, Tauch A., J. Bacteriol. 194(12), 2012
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rpoB gene sequencing for identification of Corynebacterium species.
Khamis A, Raoult D, La Scola B., J. Clin. Microbiol. 42(9), 2004
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Ultrafast pyrosequencing of Corynebacterium kroppenstedtii DSM44385 revealed insights into the physiology of a lipophilic corynebacterium that lacks mycolic acids.
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Corynebacterium kroppenstedtii sp. nov., a novel Corynebacterium that does not contain mycolic acids
AUTHOR UNKNOWN, 1998
Corynebacterium species isolated from patients with mastitis.
Paviour S, Musaad S, Roberts S, Taylor G, Taylor S, Shore K, Lang S, Holland D., Clin. Infect. Dis. 35(11), 2002
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AUTHOR UNKNOWN, 0
Biochemical and genetic characterization of Corynebacterium pseudotuberculosis.
Songer JG, Beckenbach K, Marshall MM, Olson GB, Kelley L., Am. J. Vet. Res. 49(2), 1988
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Ribotype analysis of Corynebacterium pseudotuberculosis isolates from sheep and goats.
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Calculating orthologs in bacteria and Archaea: a divide and conquer approach.
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Evidence of a large novel gene pool associated with prokaryotic genomic islands.
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Assembly of pili in Gram-positive bacteria.
Ton-That H, Schneewind O., Trends Microbiol. 12(5), 2004
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Sortases and pilin elements involved in pilus assembly of Corynebacterium diphtheriae.
Ton-That H, Marraffini LA, Schneewind O., Mol. Microbiol. 53(1), 2004
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Pili in Gram-positive bacteria: assembly, involvement in colonization and biofilm development.
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Protein sorting to the cell wall envelope of Gram-positive bacteria.
Ton-That H, Marraffini LA, Schneewind O., Biochim. Biophys. Acta 1694(1-3), 2004
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Assembly of pili on the surface of Corynebacterium diphtheriae.
Ton-That H, Schneewind O., Mol. Microbiol. 50(4), 2003
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Potential pathogenic role of aggregative-adhering Corynebacterium diphtheriae of different clonal groups in endocarditis.
Hirata R Jr, Pereira GA, Filardy AA, Gomes DL, Damasco PV, Rosa AC, Nagao PE, Pimenta FP, Mattos-Guaraldi AL., Braz. J. Med. Biol. Res. 41(11), 2008
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Patterns of adherence to HEp-2 cells and actin polymerisation by toxigenic Corynebacterium diphtheriae strains.
Hirata R Jr, Souza SM, Rocha-de-Souza CM, Andrade AF, Monteiro-Leal LH, Formiga LC, Mattos-Guaraldi AL., Microb. Pathog. 36(3), 2004
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Corynebacterium diphtheriae employs specific minor pilins to target human pharyngeal epithelial cells.
Mandlik A, Swierczynski A, Das A, Ton-That H., Mol. Microbiol. 64(1), 2007
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[Occurence of pili genes in Corynebacterium diphtheriae strains].
Zasada AA, Forminska K, Rzeczkowska M., Med Dosw Mikrobiol 64(1), 2012
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Corynebacterium pseudotuberculosis infections (Pigeon Fever) in horses in Western Colorado: An epidemiological investigation
AUTHOR UNKNOWN, 2001
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