Daniela Holtgräwe

dholtgra@cebitec.uni-bielefeld.de
ORCID logo https://orcid.org/0000-0002-1062-4576

PEVZ-ID
162199

61 Publikationen

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  • [61]
    2025 | Datenpublikation | PUB-ID: 2994643 OA
    D. Holtgräwe, et al., Transcriptomic analysis of Pinot Noir and Pinot Noir Precoce updated to PN40024.v5 reference datasets, Bielefeld University, 2025.
    PUB | Dateien verfügbar | DOI
     
  • [60]
    2024 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2994723
    N. Schmidt, et al., “BeetRepeats: reference sequences for genome and polymorphism annotation in sugar beet and wild relatives”, BMC Research Notes, vol. 17, 2024, : 351.
    PUB | DOI | Download (ext.) | WoS | PubMed | Europe PMC
     
  • [59]
    2023 | Datenpublikation | PUB-ID: 2966927 OA
    K. Sielemann, et al., Genome assembly, structural and functional annotation, and mRNA coverage/length files for KWS2320ONT_v1.0 and Strube U2BvONT_v1.0, Bielefeld University, 2023.
    PUB | Dateien verfügbar | DOI
     
  • [58]
    2023 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2980215 OA
    K. Sielemann, et al., “Genomic characterization of a nematode tolerance locus in sugar beet”, BMC Genomics, vol. 24, 2023, : 748.
    PUB | PDF | DOI | Download (ext.) | WoS | PubMed | Europe PMC | Preprint | EBI - ENA Project
     
  • [57]
    2023 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2969571 OA
    H. Schilbert, et al., “Homoeologous non-reciprocal translocation explains a major QTL for seed lignin content in oilseed rape (Brassica napus L.)”, Theoretical and Applied Genetics, vol. 136, 2023, : 172.
    PUB | PDF | DOI | Download (ext.) | WoS | PubMed | Europe PMC | Preprint | EBI - ENA Project
     
  • [56]
    2023 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2985152
    N. Schmidt, et al., “Repeat turnover meets stable chromosomes: repetitive DNA sequences mark speciation and gene pool boundaries in sugar beet and wild beets”, The Plant Journal, vol. 118, 2023, pp. 171-190.
    PUB | DOI | Download (ext.) | WoS | PubMed | Europe PMC | Preprint
     
  • [55]
    2023 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2985993
    S. Müllner, et al., “Analysis of the Rpv12 locus in a haplotype‑separated grapevine genome sequence”, Vitis: Journal of Grapevine Research , vol. 62, 2023, pp. 77-80.
    PUB | DOI | Download (ext.) | WoS
     
  • [54]
    2023 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2964982 OA
    B. Frommer, et al., “Phased grapevine genome sequence assembly of an Rpv12 carrier for exploration of Rpv12 associated positional and functional Plasmopara viticola resistance genes”, Frontiers in Plant Science, vol. 14, 2023, : 1180982.
    PUB | PDF | DOI | Download (ext.) | WoS | PubMed | Europe PMC | Preprint | EBI - ENA Project
     
  • [53]
    2023 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2978044
    X. Shi, et al., “The complete reference genome for grapevine (Vitis vinifera L.) genetics and breeding”, Horticulture Research, vol. 10, 2023, : uhad061.
    PUB | DOI | Download (ext.) | WoS | PubMed | Europe PMC | NCBI BioProject
     
  • [52]
    2023 | Datenpublikation | PUB-ID: 2966932 OA
    K. Sielemann, et al., Genome assembly and structural and functional annotation files for crop wild relatives of sugar beet, Bielefeld University, 2023.
    PUB | Dateien verfügbar | DOI
     
  • [51]
    2023 | Preprint | Veröffentlicht | PUB-ID: 2980439
    K. Sielemann, et al., “Pangenome of cultivated beet and crop wild relatives reveals parental relationships of a tetraploid wild beet”, bioRxiv, 2023.
    PUB | DOI | Download (ext.) | Preprint | EBI - ENA Project
     
  • [50]
    2023 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2967809
    A. Velt, et al., “An improved reference of the grapevine genome reasserts the origin of the PN40024 highly-homozygous genotype”, G3 Genes|Genomes|Genetics, vol. 13, 2023, : jkad067.
    PUB | DOI | Download (ext.) | PubMed | Europe PMC | Preprint | EBI - ENA Project
     
  • [49]
    2022 | Datenpublikation | PUB-ID: 2962793 OA
    B. Frommer, B. Weisshaar, and D. Holtgräwe, Chromosome-scale haplotype genome sequence assemblies of ‘Börner’ and corresponding genome sequence annotations, Bielefeld University, 2022.
    PUB | Dateien verfügbar | DOI
     
  • [48]
    2022 | Preprint | PUB-ID: 2964291
    B. Frommer, et al., “A fully phased interspecific grapevine rootstock genome sequence representing *V. riparia* and *V. cinerea* and allele-aware annotation of the phylloxera resistance locus *Rdv1*”, bioRxiv, 2022.
    PUB | DOI | Download (ext.) | Preprint | EBI - ENA Project
     
  • [47]
    2022 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2963558 OA
    H. Schilbert, et al., “Mapping-by-sequencing reveals genomic regions associated with seed quality parameters in <em>Brassica napus</em>”, Genes, vol. 13, 2022, : 1131.
    PUB | PDF | DOI | Download (ext.) | WoS | PubMed | Europe PMC | Preprint | EBI - ENA Project
     
  • [46]
    2022 | Datenpublikation | PUB-ID: 2963492 OA
    B. Pucker, et al., Supplementary material related to MBS analysis of seed quality parameters in Brassica napus, Bielefeld University, 2022.
    PUB | Dateien verfügbar | DOI
     
  • [45]
    2022 | Datenpublikation | PUB-ID: 2962800 OA
    B. Frommer, et al., Phase-separated genome sequence assembly of the grapevine cultivar Gf.99-03 and its annotation, Bielefeld University, 2022.
    PUB | Dateien verfügbar | DOI
     
  • [44]
    2022 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2958188 OA
    K. Sielemann, et al., “Complete pan-plastome sequences enable high resolution phylogenetic classification of sugar beet and closely related crop wild relatives”, BMC Genomics, vol. 23, 2022, : 113.
    PUB | PDF | DOI | Download (ext.) | WoS | PubMed | Europe PMC | Preprint | EBI - ENA Project
     
  • [43]
    2022 | Datenpublikation | PUB-ID: 2962639 OA
    T. Rosleff Sörensen, et al., Contig sequences derived from selected ‘Börner’ BACs assigned to either of the two parental haplotypes *V. riparia* or *V. cinerea* of the *Vitis* rootstock ‘Börner’, Bielefeld University, 2022.
    PUB | Dateien verfügbar | DOI
     
  • [42]
    2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2952955 OA
    J. Theine, et al., “Transcriptomic analysis of temporal shifts in berry development between two grapevine cultivars of the Pinot family reveals potential genes controlling ripening time”, BMC Plant Biology, vol. 21, 2021, : 327.
    PUB | PDF | DOI | Download (ext.) | WoS | PubMed | Europe PMC | Preprint | EBI - ENA Project
     
  • [41]
    2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2956071 OA
    H. Schilbert, et al., “Characterization of the Brassica napus flavonol synthase gene family reveals bifunctional flavonol synthases”, Frontiers in Plant Science, vol. 12, 2021, : 733762.
    PUB | PDF | DOI | Download (ext.) | WoS | PubMed | Europe PMC | Preprint | EBI - ENA Project
     
  • [40]
    2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2948771
    S. Matar, et al., “The transition to flowering in winter rapeseed during vernalization”, Plant, Cell & Environment, vol. 44, 2021, pp. 506-518.
    PUB | DOI | Download (ext.) | WoS | PubMed | Europe PMC | Preprint | GenBank
     
  • [39]
    2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2948720 OA
    B. Pucker, et al., “RNA-Seq Time Series of Vitis vinifera Bud Development Reveals Correlation of Expression Patterns with the Local Temperature Profile”, Plants, vol. 9, 2020, : 1548.
    PUB | PDF | DOI | Download (ext.) | WoS | PubMed | Europe PMC | Preprint | EBI - ENA Project
     
  • [38]
    2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941655 OA
    D. Holtgräwe, et al., “A Partially Phase-Separated Genome Sequence Assembly of the Vitis Rootstock ‘Börner’ (Vitis riparia × Vitis cinerea) and Its Exploitation for Marker Development and Targeted Mapping”, Frontiers in Plant Science, vol. 11, 2020, : 156.
    PUB | PDF | DOI | WoS | PubMed | Europe PMC | Preprint | EBI - ENA Project | GenBank
     
  • [37]
    2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2942459 OA
    B. Frommer, et al., “Genome Sequences of Both Organelles of the Grapevine Rootstock Cultivar ‘Börner’”, Microbiology Resource Announcements, vol. 9, 2020, : e01471-19.
    PUB | PDF | DOI | Download (ext.) | WoS | PubMed | Europe PMC | Preprint | EBI - ENA Project | GenBank
     
  • [36]
    2020 | Datenpublikation | PUB-ID: 2941430 OA
    B. Frommer, D. Holtgräwe, and B. Weisshaar, Dataset describing RNA editing sites in the chloroplast genome of 'Boerner' (Vitis riparia x Vitis cinerea), Bielefeld University, 2020.
    PUB | Dateien verfügbar | DOI
     
  • [35]
    2020 | Datenpublikation | PUB-ID: 2941437 OA
    B. Frommer, D. Holtgräwe, and B. Weisshaar, Dataset describing RNA editing sites in the mitochondrial genome of 'Boerner' (Vitis riparia x Vitis cinerea), Bielefeld University, 2020.
    PUB | Dateien verfügbar | DOI
     
  • [34]
    2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2943420
    D.P. Vu, et al., “Vacuolar sucrose homeostasis is critical for plant development, seed properties, and night-time survival in Arabidopsis”, Journal of Experimental Botany, vol. 71, 2020, pp. 4930-4943.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [33]
    2019 | Datenpublikation | PUB-ID: 2938180 OA
    D. Holtgräwe, et al., Heterozygous SNVs between BoeWGS1.0 and PN40024, Bielefeld University, 2019.
    PUB | Dateien verfügbar | DOI
     
  • [32]
    2019 | Datenpublikation | PUB-ID: 2938178 OA
    D. Holtgräwe, et al., Homozygous SNVs between BoeWGS1.0 and PN40024, Bielefeld University, 2019.
    PUB | Dateien verfügbar | DOI
     
  • [31]
    2019 | Datenpublikation | PUB-ID: 2938185 OA
    D. Holtgräwe, et al., Description and mapping positions of BoeWGS1.0 contigs, Bielefeld University, 2019.
    PUB | Dateien verfügbar | DOI
     
  • [30]
    2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2935698 OA
    B. Pucker, et al., “Chromosome-level sequence assembly reveals the structure of the Arabidopsis thaliana Nd-1 genome and its gene set”, PLoS One, vol. 14, 2019, : e0216233.
    PUB | PDF | DOI | Download (ext.) | WoS | PubMed | Europe PMC | Preprint | GenBank
     
  • [29]
    2019 | Datenpublikation | PUB-ID: 2949309
    B. Pucker, et al., Chromosome-level Assembly Reveals the Niederzenz (Nd-1) Genome Structure and Gene Set, Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), Seeland OT Gatersleben, 2019.
    PUB | Dateien verfügbar | DOI
     
  • [28]
    2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2936315 OA
    N. Kamal, et al., “Characterization of genes and alleles involved in the control of flowering time in grapevine.”, PLoS One, vol. 14, 2019, : e0214703.
    PUB | PDF | DOI | Download (ext.) | WoS | PubMed | Europe PMC | Preprint | NCBI BioProject
     
  • [27]
    2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2911903
    G.G. Capistrano-Gossmann, et al., “Crop wild relative populations of Beta vulgaris allow direct mapping of agronomically important genes”, Nature Communications, vol. 8, 2017, : 15708.
    PUB | DOI | Download (ext.) | WoS | PubMed | Europe PMC | NCBI BioProject
     
  • [26]
    2017 | Datenpublikation | PUB-ID: 2949668
    J.C. Dohm, et al., Beta vulgaris spp. maritima draft genome sequence assembly and structural prediction of protein coding genes, Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), Seeland OT Gatersleben., 2017.
    PUB | Dateien verfügbar | DOI
     
  • [25]
    2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2915524 OA
    B. Pucker, D. Holtgräwe, and B. Weisshaar, “Consideration of non-canonical splice sites improves gene prediction on the Arabidopsis thaliana Niederzenz-1 genome sequence”, BMC Research Notes, vol. 10, 2017, : 667.
    PUB | PDF | DOI | Download (ext.) | PubMed | Europe PMC
     
  • [24]
    2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2905844 OA
    B. Pucker, et al., “A de novo Genome Sequence Assembly of the Arabidopsis thaliana Accession Niederzenz-1 Displays Presence/Absence Variation and Strong Synteny”, PLoS One, vol. 11, 2016, : e0164321.
    PUB | PDF | DOI | WoS | PubMed | Europe PMC | NCBI BioProject
     
  • [23]
    2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2905177 OA
    K.B. Stadermann, D. Holtgräwe, and B. Weisshaar, “Chloroplast genome sequence of Arabidopsis thaliana accession Landsberg erecta assembled from Single-Molecule, Real-Time sequencing data”, Genome Announcements, vol. 4, 2016, : e00975-16.
    PUB | PDF | DOI | WoS | PubMed | Europe PMC | GenBank
     
  • [22]
    2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2901603 OA
    D. Ries, et al., “Rapid gene identification in sugar beet using deep sequencing of DNA from phenotypic pools selected from breeding panels”, BMC Genomics, vol. 17, 2016, : 236.
    PUB | PDF | DOI | WoS | PubMed | Europe PMC | EBI - ENA Project
     
  • [21]
    2016 | Kurzbeitrag Konferenz / Poster | PUB-ID: 2905827 OA
    B. Weisshaar, et al., “Sugar Beet BeetMap-3, and Steps to Improve the Genome Assembly and Genome Sequence Annotation (W875)”, Presented at the Plant and Animal Genome XXIV Conference, San Diego, USA, 2016.
    PUB | PDF
     
  • [20]
    2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2775617 OA
    K.B. Stadermann, B. Weisshaar, and D. Holtgräwe, “SMRT sequencing only de novo assembly of the sugar beet (Beta vulgaris) chloroplast genome”, BMC Bioinformatics, vol. 16, 2015, : 295.
    PUB | PDF | DOI | WoS | PubMed | Europe PMC | GenBank
     
  • [19]
    2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2764063 OA
    A.E. Minoche, et al., “Exploiting single-molecule transcript sequencing for eukaryotic gene prediction”, Genome Biology, vol. 16, 2015, : 184.
    PUB | PDF | DOI | WoS | PubMed | Europe PMC
     
  • [18]
    2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2689802
    I. Fechter, et al., “QTL analysis of flowering time and ripening traits suggests an impact of a genomic region on linkage group 1 in Vitis.”, Theoretical and Applied Genetics, vol. 127, 2014, pp. 1857-1872.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [17]
    2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2643946
    J.C. Dohm, et al., “The genome of the recently domesticated crop plant sugar beet (Beta vulgaris)”, Nature, vol. 505, 2014, pp. 546-549.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [16]
    2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2699085 OA
    D. Holtgräwe, et al., “Reliable In Silico Identification of Sequence Polymorphisms and Their Application for Extending the Genetic Map of Sugar Beet (Beta vulgaris)”, PLoS ONE, vol. 9, 2014, : e110113.
    PUB | PDF | DOI | WoS | PubMed | Europe PMC
     
  • [15]
    2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2696778 OA
    R. Stracke, et al., “Genome-wide identification and characterisation of R2R3-MYB genes in sugar beet ( Beta vulgaris )”, BMC Plant Biology, vol. 14, 2014, : 249.
    PUB | PDF | DOI | WoS | PubMed | Europe PMC
     
  • [14]
    2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2678005
    T. Heitkam, et al., “Profiling of extensively diversified plant LINEs reveals distinct plant-specific subclades”, The Plant Journal, vol. 79, 2014, pp. 385-397.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [13]
    2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2684495
    N. Dally, et al., “The B2 flowering time locus of beet encodes a zinc finger transcription factor”, Proceedings of the National Academy of Sciences, vol. 111, 2014, pp. 10365-10370.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [12]
    2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2562610
    B. Weber, et al., “Highly diverse chromoviruses of Beta vulgaris are classified by chromodomains and chromosomal integration”, Mobile DNA, vol. 4, 2013, : 8.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [11]
    2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2454417
    J.C. Dohm, et al., “Palaeohexaploid Ancestry for Caryophyllales Inferred from Extensive Gene-Based Physical and Genetic Mapping of the Sugar Beet Genome (Beta vulgaris)”, The Plant Journal, vol. 70, 2012, pp. 528-540.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [10]
    2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2532965
    C. Wollrab, et al., “Evolutionary reshuffling in the Errantivirus lineage Elbe within the Beta vulgaris genome”, The Plant Journal, vol. 72, 2012, pp. 636-651.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [9]
    2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2457584
    G. Menzel, et al., “Survey of sugar beet (Beta vulgaris L.) hAT transposons and MITE-like hATpin derivatives”, Plant Molecular Biology, vol. 78, 2012, pp. 393-405.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [8]
    2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2318497
    D. Holtgräwe, B. Weisshaar, and H. Himmelbauer, “Die Entschlüsselung der Süßen: GABI-Future-Projekt erstellt Referenzsequenz des Genoms der Zuckerrübe”, GenomXPress, vol. 2011, 2011, pp. 4-6.
    PUB
     
  • [7]
    2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1665020 OA
    F. Zakrzewski, et al., “Analysis of a c0t-1 library enables the targeted identification of minisatellite and satellite families in Beta vulgaris”, BMC Plant Biology, vol. 10, 2010, : 8.
    PUB | PDF | DOI | WoS | PubMed | Europe PMC
     
  • [6]
    2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1794548
    C. Lange, et al., “High-throughput identification of genetic markers using representational oligonucleotide microarray analysis”, Theoretical and Applied Genetics, vol. 121, 2010, pp. 549-565.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [5]
    2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1589556
    T. Wenke, et al., “An abundant and heavily truncated non-LTR retrotransposon (LINE) family in Beta vulgaris”, Plant Molecular Biology, vol. 71, 2009, pp. 585-597.
    PUB | DOI | WoS | PubMed | Europe PMC | GenBank
     
  • [4]
    2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1586335
    G. Menzel, et al., “Diversity of a complex centromeric satellite and molecular characterization of dispersed sequence families in sugar beet (Beta vulgaris)”, Annals of Botany, vol. 102, 2008, pp. 521-530.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [3]
    2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1635969
    C. Lange, et al., “Construction and characterization of a sugar beet (Beta vulgaris) fosmid library”, Genome, vol. 51, 2008, pp. 948-951.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [2]
    2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1996233
    D. Holtgräwe, et al., “Cytoskeleton-associated, carbohydrate-metabolizing enzymes in maize identified by yeast two-hybrid screening”, Physiologia Plantarum, vol. 125, 2005, pp. 141-156.
    PUB | DOI | WoS
     
  • [1]
    2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1864372
    S.C. Hardin, et al., “Phosphorylation of sucrose synthase at serine 170: occurrence and possible role as a signal for proteolysis.”, Plant J, vol. 35, 2003, pp. 588-603.
    PUB | DOI | WoS | PubMed | Europe PMC
     
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