Genome-wide identification and characterisation of R2R3-MYB genes in sugar beet ( Beta vulgaris )

Stracke R, Holtgräwe D, Schneider J, Pucker B, Rosleff Sörensen T, Weisshaar B (2014)
BMC Plant Biology 14(1): 249.

Zeitschriftenaufsatz | Veröffentlicht | Englisch
 
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urn:nbn:de:0070-pub-26967781
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Stracke, RalfUniBi ; Holtgräwe, DanielaUniBi ; Schneider, JessicaUniBi; Pucker, BoasUniBi ; Rosleff Sörensen, ThomasUniBi; Weisshaar, BerndUniBi
Einrichtung
Centrum für Biotechnologie > Institut für Genomforschung und Systembiologie
Fakultät für Biologie > Genetik und Genomik der Pflanzen
Abstract / Bemerkung
Background: The R2R3-MYB genes comprise one of the largest transcription factor gene families in plants, playing regulatory roles in plant-specific developmental processes, metabolite accumulation and defense responses. Although genome-wide analysis of this gene family has been carried out in some species, the R2R3-MYB genes in Beta vulgaris ssp. vulgaris (sugar beet) as the first sequenced member of the order Caryophyllales, have not been analysed heretofore. Results: We present a comprehensive, genome-wide analysis of the MYB genes from Beta vulgaris ssp. vulgaris (sugar beet) which is the first species of the order Caryophyllales with a sequenced genome. A total of 70 R2R3-MYB genes as well as genes encoding three other classes of MYB proteins containing multiple MYB repeats were identified and characterised with respect to structure and chromosomal organisation. Also, organ specific expression patterns were determined from RNA-seq data. The R2R3-MYB genes were functionally categorised which led to the identification of a sugar beet-specific clade with an atypical amino acid composition in the R3 domain, putatively encoding betalain regulators. The functional classification was verified by experimental confirmation of the prediction that the R2R3-MYB gene Bv_iogq encodes a flavonol regulator. Conclusions: This study provides the first step towards cloning and functional dissection of the role of MYB transcription factor genes in the nutritionally and evolutionarily interesting species B. vulgaris. In addition, it describes the flavonol regulator BvMYB12, being the first sugar beet R2R3-MYB with an experimentally proven function.
Erscheinungsjahr
2014
Zeitschriftentitel
BMC Plant Biology
Band
14
Ausgabe
1
Art.-Nr.
249
ISSN
1471-2229
Page URI
https://pub.uni-bielefeld.de/record/2696778

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Stracke R, Holtgräwe D, Schneider J, Pucker B, Rosleff Sörensen T, Weisshaar B. Genome-wide identification and characterisation of R2R3-MYB genes in sugar beet ( Beta vulgaris ). BMC Plant Biology. 2014;14(1): 249.
Stracke, R., Holtgräwe, D., Schneider, J., Pucker, B., Rosleff Sörensen, T., & Weisshaar, B. (2014). Genome-wide identification and characterisation of R2R3-MYB genes in sugar beet ( Beta vulgaris ). BMC Plant Biology, 14(1), 249. doi:10.1186/s12870-014-0249-8
Stracke, Ralf, Holtgräwe, Daniela, Schneider, Jessica, Pucker, Boas, Rosleff Sörensen, Thomas, and Weisshaar, Bernd. 2014. “Genome-wide identification and characterisation of R2R3-MYB genes in sugar beet ( Beta vulgaris )”. BMC Plant Biology 14 (1): 249.
Stracke, R., Holtgräwe, D., Schneider, J., Pucker, B., Rosleff Sörensen, T., and Weisshaar, B. (2014). Genome-wide identification and characterisation of R2R3-MYB genes in sugar beet ( Beta vulgaris ). BMC Plant Biology 14:249.
Stracke, R., et al., 2014. Genome-wide identification and characterisation of R2R3-MYB genes in sugar beet ( Beta vulgaris ). BMC Plant Biology, 14(1): 249.
R. Stracke, et al., “Genome-wide identification and characterisation of R2R3-MYB genes in sugar beet ( Beta vulgaris )”, BMC Plant Biology, vol. 14, 2014, : 249.
Stracke, R., Holtgräwe, D., Schneider, J., Pucker, B., Rosleff Sörensen, T., Weisshaar, B.: Genome-wide identification and characterisation of R2R3-MYB genes in sugar beet ( Beta vulgaris ). BMC Plant Biology. 14, : 249 (2014).
Stracke, Ralf, Holtgräwe, Daniela, Schneider, Jessica, Pucker, Boas, Rosleff Sörensen, Thomas, and Weisshaar, Bernd. “Genome-wide identification and characterisation of R2R3-MYB genes in sugar beet ( Beta vulgaris )”. BMC Plant Biology 14.1 (2014): 249.
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19 Zitationen in Europe PMC

Daten bereitgestellt von Europe PubMed Central.

Genome-wide identification and expression analysis of the MYB transcription factor in moso bamboo (Phyllostachys edulis).
Yang K, Li Y, Wang S, Xu X, Sun H, Zhao H, Li X, Gao Z., PeerJ 6(), 2019
PMID: 30648007
A novel R3 MYB transcriptional repressor associated with the loss of floral pigmentation in Iochroma.
Gates DJ, Olson BJSC, Clemente TE, Smith SD., New Phytol 217(3), 2018
PMID: 29023752
Evidence for contemporary plant mitoviruses.
Nibert ML, Vong M, Fugate KK, Debat HJ., Virology 518(), 2018
PMID: 29438872
Transcriptome analysis of radish sprouts hypocotyls reveals the regulatory role of hydrogen-rich water in anthocyanin biosynthesis under UV-A.
Zhang X, Su N, Jia L, Tian J, Li H, Huang L, Shen Z, Cui J., BMC Plant Biol 18(1), 2018
PMID: 30305047
Genome-wide analyses supported by RNA-Seq reveal non-canonical splice sites in plant genomes.
Pucker B, Brockington SF., BMC Genomics 19(1), 2018
PMID: 30594132
Identification and expression analysis under abiotic stress of the R2R3-MYB genes in Ginkgo biloba L.
Liu X, Yu W, Zhang X, Wang G, Cao F, Cheng H., Physiol Mol Biol Plants 23(3), 2017
PMID: 28878490
Crop wild relative populations of Beta vulgaris allow direct mapping of agronomically important genes.
Capistrano-Gossmann GG, Ries D, Holtgräwe D, Minoche A, Kraft T, Frerichmann SLM, Rosleff Soerensen T, Dohm JC, González I, Schilhabel M, Varrelmann M, Tschoep H, Uphoff H, Schütze K, Borchardt D, Toerjek O, Mechelke W, Lein JC, Schechert AW, Frese L, Himmelbauer H, Weisshaar B, Kopisch-Obuch FJ., Nat Commun 8(), 2017
PMID: 28585529
The AtMYB12 activation domain maps to a short C-terminal region of the transcription factor.
Stracke R, Turgut-Kara N, Weisshaar B., Z Naturforsch C 72(7-8), 2017
PMID: 28284041
Genome-wide identification, functional prediction, and evolutionary analysis of the R2R3-MYB superfamily in Brassica napus.
Hajiebrahimi A, Owji H, Hemmati S., Genome 60(10), 2017
PMID: 28732175
Genome-wide identification and characterization of aquaporin gene family in Beta vulgaris.
Kong W, Yang S, Wang Y, Bendahmane M, Fu X., PeerJ 5(), 2017
PMID: 28948097
Consideration of non-canonical splice sites improves gene prediction on the Arabidopsis thaliana Niederzenz-1 genome sequence.
Pucker B, Holtgräwe D, Weisshaar B., BMC Res Notes 10(1), 2017
PMID: 29202864
TRANSPARENT TESTA GLABRA 1-Dependent Regulation of Flavonoid Biosynthesis.
Zhang B, Schrader A., Plants (Basel) 6(4), 2017
PMID: 29261137
Identification, cloning and characterization of R2R3-MYB gene family in canola (Brassica napus L.) identify a novel member modulating ROS accumulation and hypersensitive-like cell death.
Chen B, Niu F, Liu WZ, Yang B, Zhang J, Ma J, Cheng H, Han F, Jiang YQ., DNA Res 23(2), 2016
PMID: 26800702
Genome-Wide Identification, Evolution and Functional Divergence of MYB Transcription Factors in Chinese White Pear (Pyrus bretschneideri).
Li X, Xue C, Li J, Qiao X, Li L, Yu L, Huang Y, Wu J., Plant Cell Physiol 57(4), 2016
PMID: 26872835
Swapping one red pigment for another.
Davies KM., Nat Genet 47(1), 2015
PMID: 25547597
Transcriptomic Analysis Reveals Key Genes Related to Betalain Biosynthesis in Pulp Coloration of Hylocereus polyrhizus.
Qingzhu H, Chengjie C, Zhe C, Pengkun C, Yuewen M, Jingyu W, Jian Z, Guibing H, Jietang Z, Yonghua Q., Front Plant Sci 6(), 2015
PMID: 26779215
Phenylpropanoids Accumulation in Eggplant Fruit: Characterization of Biosynthetic Genes and Regulation by a MYB Transcription Factor.
Docimo T, Francese G, Ruggiero A, Batelli G, De Palma M, Bassolino L, Toppino L, Rotino GL, Mennella G, Tucci M., Front Plant Sci 6(), 2015
PMID: 26858726
Identification and Characterization of 40 Isolated Rehmannia glutinosa MYB Family Genes and Their Expression Profiles in Response to Shading and Continuous Cropping.
Wang F, Suo Y, Wei H, Li M, Xie C, Wang L, Chen X, Zhang Z., Int J Mol Sci 16(7), 2015
PMID: 26147429
Genome-Wide Profiling of Histone Modifications (H3K9me2 and H4K12ac) and Gene Expression in Rust (Uromyces appendiculatus) Inoculated Common Bean (Phaseolus vulgaris L.).
Ayyappan V, Kalavacharla V, Thimmapuram J, Bhide KP, Sripathi VR, Smolinski TG, Manoharan M, Thurston Y, Todd A, Kingham B., PLoS One 10(7), 2015
PMID: 26167691

77 References

Daten bereitgestellt von Europe PubMed Central.

Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes.
Riechmann JL, Heard J, Martin G, Reuber L, Jiang C, Keddie J, Adam L, Pineda O, Ratcliffe OJ, Samaha RR, Creelman R, Pilgrim M, Broun P, Zhang JZ, Ghandehari D, Sherman BK, Yu G., Science 290(5499), 2000
PMID: 11118137
MYB transcription factors in Arabidopsis.
Dubos C, Stracke R, Grotewold E, Weisshaar B, Martin C, Lepiniec L., Trends Plant Sci. 15(10), 2010
PMID: 20674465
The cavity in the hydrophobic core of Myb DNA-binding domain is reserved for DNA recognition and trans-activation.
Ogata K, Kanei-Ishii C, Sasaki M, Hatanaka H, Nagadoi A, Enari M, Nakamura H, Nishimura Y, Ishii S, Sarai A., Nat. Struct. Biol. 3(2), 1996
PMID: 8564545
Evolutionary dynamics of the DNA-binding domains in putative R2R3-MYB genes identified from rice subspecies indica and japonica genomes.
Jia L, Clegg MT, Jiang T., Plant Physiol. 134(2), 2004
PMID: 14966247
Nucleotide sequence of the retroviral leukemia gene v-myb and its cellular progenitor c-myb: the architecture of a transduced oncogene.
Klempnauer KH, Gonda TJ, Bishop JM., Cell 31(2 Pt 1), 1982
PMID: 6297766
Conservation and diversification of three-repeat Myb transcription factors in plants.
Ito M., J. Plant Res. 118(1), 2005
PMID: 15703854
R1R2R3-Myb proteins positively regulate cytokinesis through activation of KNOLLE transcription in Arabidopsis thaliana.
Haga N, Kato K, Murase M, Araki S, Kubo M, Demura T, Suzuki K, Muller I, Voss U, Jurgens G, Ito M., Development 134(6), 2007
PMID: 17287251
Multifunctionality and diversity within the plant MYB-gene family.
Jin H, Martin C., Plant Mol. Biol. 41(5), 1999
PMID: 10645718
Molecular evolution of the Myb family of transcription factors: evidence for polyphyletic origin.
Rosinski JA, Atchley WR., J. Mol. Evol. 46(1), 1998
PMID: 9419227
Newly discovered plant c-myb-like genes rewrite the evolution of the plant myb gene family.
Braun EL, Grotewold E., Plant Physiol. 121(1), 1999
PMID: 10482656
c-MYB oncogene-like genes encoding three MYB repeats occur in all major plant lineages.
Kranz H, Scholz K, Weisshaar B., Plant J. 21(2), 2000
PMID: 10743663
Recently duplicated maize R2R3 Myb genes provide evidence for distinct mechanisms of evolutionary divergence after duplication.
Dias AP, Braun EL, McMullen MD, Grotewold E., Plant Physiol. 131(2), 2003
PMID: 12586885
Comprehensive identification of Arabidopsis thaliana MYB transcription factors interacting with R/B-like BHLH proteins.
Zimmermann IM, Heim MA, Weisshaar B, Uhrig JF., Plant J. 40(1), 2004
PMID: 15361138
The Jasmonate-ZIM domain proteins interact with the R2R3-MYB transcription factors MYB21 and MYB24 to affect Jasmonate-regulated stamen development in Arabidopsis.
Song S, Qi T, Huang H, Ren Q, Wu D, Chang C, Peng W, Liu Y, Peng J, Xie D., Plant Cell 23(3), 2011
PMID: 21447791
Genome-wide analysis of the MYB transcription factor superfamily in soybean.
Du H, Yang SS, Liang Z, Feng BR, Liu L, Huang YB, Tang YX., BMC Plant Biol. 12(), 2012
PMID: 22776508
Towards functional characterisation of the members of the R2R3-MYB gene family from Arabidopsis thaliana.
Kranz HD, Denekamp M, Greco R, Jin H, Leyva A, Meissner RC, Petroni K, Urzainqui A, Bevan M, Martin C, Smeekens S, Tonelli C, Paz-Ares J, Weisshaar B., Plant J. 16(2), 1998
PMID: 9839469
The R2R3-MYB gene family in Arabidopsis thaliana.
Stracke R, Werber M, Weisshaar B., Curr. Opin. Plant Biol. 4(5), 2001
PMID: 11597504
Identification of conserved gene structures and carboxy-terminal motifs in the Myb gene family of Arabidopsis and Oryza sativa L. ssp. indica.
Jiang C, Gu X, Peterson T., Genome Biol. 5(7), 2004
PMID: 15239831

AUTHOR UNKNOWN, 0
Expansion and diversification of the Populus R2R3-MYB family of transcription factors.
Wilkins O, Nahal H, Foong J, Provart NJ, Campbell MM., Plant Physiol. 149(2), 2008
PMID: 19091872
MYB transcription factors in plants.
Martin C, Paz-Ares J., Trends Genet. 13(2), 1997
PMID: 9055608
The R2R3-MYB transcription factor gene family in maize.
Du H, Feng BR, Yang SS, Huang YB, Tang YX., PLoS ONE 7(6), 2012
PMID: 22719841
The MYB transcription factor superfamily of Arabidopsis: expression analysis and phylogenetic comparison with the rice MYB family.
Yanhui C, Xiaoyuan Y, Kun H, Meihua L, Jigang L, Zhaofeng G, Zhiqiang L, Yunfei Z, Xiaoxiao W, Xiaoming Q, Yunping S, Li Z, Xiaohui D, Jingchu L, Xing-Wang D, Zhangliang C, Hongya G, Li-Jia Q., Plant Mol. Biol. 60(1), 2006
PMID: 16463103
Genome-wide identification and characterization of R2R3MYB family in Cucumis sativus.
Li Q, Zhang C, Li J, Wang L, Ren Z., PLoS ONE 7(10), 2012
PMID: 23110079
Genome wide analysis of the apple MYB transcription factor family allows the identification of MdoMYB121 gene confering abiotic stress tolerance in plants.
Cao ZH, Zhang SZ, Wang RK, Zhang RF, Hao YJ., PLoS ONE 8(7), 2013
PMID: 23950843
The genome of the recently domesticated crop plant sugar beet (Beta vulgaris).
Dohm JC, Minoche AE, Holtgrawe D, Capella-Gutierrez S, Zakrzewski F, Tafer H, Rupp O, Sorensen TR, Stracke R, Reinhardt R, Goesmann A, Kraft T, Schulz B, Stadler PF, Schmidt T, Gabaldon T, Lehrach H, Weisshaar B, Himmelbauer H., Nature 505(7484), 2013
PMID: 24352233
Analysis of the genome sequence of the flowering plant Arabidopsis thaliana.
Arabidopsis Genome Initiative., Nature 408(6814), 2000
PMID: 11130711
A draft sequence of the rice genome (Oryza sativa L. ssp. japonica).
Goff SA, Ricke D, Lan TH, Presting G, Wang R, Dunn M, Glazebrook J, Sessions A, Oeller P, Varma H, Hadley D, Hutchison D, Martin C, Katagiri F, Lange BM, Moughamer T, Xia Y, Budworth P, Zhong J, Miguel T, Paszkowski U, Zhang S, Colbert M, Sun WL, Chen L, Cooper B, Park S, Wood TC, Mao L, Quail P, Wing R, Dean R, Yu Y, Zharkikh A, Shen R, Sahasrabudhe S, Thomas A, Cannings R, Gutin A, Pruss D, Reid J, Tavtigian S, Mitchell J, Eldredge G, Scholl T, Miller RM, Bhatnagar S, Adey N, Rubano T, Tusneem N, Robinson R, Feldhaus J, Macalma T, Oliphant A, Briggs S., Science 296(5565), 2002
PMID: 11935018
The genome of black cottonwood, Populus trichocarpa (Torr. & Gray).
Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapman J, Chen GL, Cooper D, Coutinho PM, Couturier J, Covert S, Cronk Q, Cunningham R, Davis J, Degroeve S, Dejardin A, Depamphilis C, Detter J, Dirks B, Dubchak I, Duplessis S, Ehlting J, Ellis B, Gendler K, Goodstein D, Gribskov M, Grimwood J, Groover A, Gunter L, Hamberger B, Heinze B, Helariutta Y, Henrissat B, Holligan D, Holt R, Huang W, Islam-Faridi N, Jones S, Jones-Rhoades M, Jorgensen R, Joshi C, Kangasjarvi J, Karlsson J, Kelleher C, Kirkpatrick R, Kirst M, Kohler A, Kalluri U, Larimer F, Leebens-Mack J, Leple JC, Locascio P, Lou Y, Lucas S, Martin F, Montanini B, Napoli C, Nelson DR, Nelson C, Nieminen K, Nilsson O, Pereda V, Peter G, Philippe R, Pilate G, Poliakov A, Razumovskaya J, Richardson P, Rinaldi C, Ritland K, Rouze P, Ryaboy D, Schmutz J, Schrader J, Segerman B, Shin H, Siddiqui A, Sterky F, Terry A, Tsai CJ, Uberbacher E, Unneberg P, Vahala J, Wall K, Wessler S, Yang G, Yin T, Douglas C, Marra M, Sandberg G, Van de Peer Y, Rokhsar D., Science 313(5793), 2006
PMID: 16973872
Genome sequence of the palaeopolyploid soybean.
Schmutz J, Cannon SB, Schlueter J, Ma J, Mitros T, Nelson W, Hyten DL, Song Q, Thelen JJ, Cheng J, Xu D, Hellsten U, May GD, Yu Y, Sakurai T, Umezawa T, Bhattacharyya MK, Sandhu D, Valliyodan B, Lindquist E, Peto M, Grant D, Shu S, Goodstein D, Barry K, Futrell-Griggs M, Abernathy B, Du J, Tian Z, Zhu L, Gill N, Joshi T, Libault M, Sethuraman A, Zhang XC, Shinozaki K, Nguyen HT, Wing RA, Cregan P, Specht J, Grimwood J, Rokhsar D, Stacey G, Shoemaker RC, Jackson SA., Nature 463(7278), 2010
PMID: 20075913
The genome of the domesticated apple (Malus × domestica Borkh.).
Velasco R, Zharkikh A, Affourtit J, Dhingra A, Cestaro A, Kalyanaraman A, Fontana P, Bhatnagar SK, Troggio M, Pruss D, Salvi S, Pindo M, Baldi P, Castelletti S, Cavaiuolo M, Coppola G, Costa F, Cova V, Dal Ri A, Goremykin V, Komjanc M, Longhi S, Magnago P, Malacarne G, Malnoy M, Micheletti D, Moretto M, Perazzolli M, Si-Ammour A, Vezzulli S, Zini E, Eldredge G, Fitzgerald LM, Gutin N, Lanchbury J, Macalma T, Mitchell JT, Reid J, Wardell B, Kodira C, Chen Z, Desany B, Niazi F, Palmer M, Koepke T, Jiwan D, Schaeffer S, Krishnan V, Wu C, Chu VT, King ST, Vick J, Tao Q, Mraz A, Stormo A, Stormo K, Bogden R, Ederle D, Stella A, Vecchietti A, Kater MM, Masiero S, Lasserre P, Lespinasse Y, Allan AC, Bus V, Chagne D, Crowhurst RN, Gleave AP, Lavezzo E, Fawcett JA, Proost S, Rouze P, Sterck L, Toppo S, Lazzari B, Hellens RP, Durel CE, Gutin A, Bumgarner RE, Gardiner SE, Skolnick M, Egholm M, Van de Peer Y, Salamini F, Viola R., Nat. Genet. 42(10), 2010
PMID: 20802477
Palaeohexaploid ancestry for Caryophyllales inferred from extensive gene-based physical and genetic mapping of the sugar beet genome (Beta vulgaris).
Dohm JC, Lange C, Holtgrawe D, Sorensen TR, Borchardt D, Schulz B, Lehrach H, Weisshaar B, Himmelbauer H., Plant J. 70(3), 2012
PMID: 22211633
MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods.
Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S., Mol. Biol. Evol. 28(10), 2011
PMID: 21546353
The Arabidopsis ATR1 Myb transcription factor controls indolic glucosinolate homeostasis.
Celenza JL, Quiel JA, Smolen GA, Merrikh H, Silvestro AR, Normanly J, Bender J., Plant Physiol. 137(1), 2004
PMID: 15579661
A systems biology approach identifies a R2R3 MYB gene subfamily with distinct and overlapping functions in regulation of aliphatic glucosinolates.
Sonderby IE, Hansen BG, Bjarnholt N, Ticconi C, Halkier BA, Kliebenstein DJ., PLoS ONE 2(12), 2007
PMID: 18094747
The transcription factor HIG1/MYB51 regulates indolic glucosinolate biosynthesis in Arabidopsis thaliana.
Gigolashvili T, Berger B, Mock HP, Muller C, Weisshaar B, Flugge UI., Plant J. 50(5), 2007
PMID: 17461791
HAG2/MYB76 and HAG3/MYB29 exert a specific and coordinated control on the regulation of aliphatic glucosinolate biosynthesis in Arabidopsis thaliana.
Gigolashvili T, Engqvist M, Yatusevich R, Muller C, Flugge UI., New Phytol. 177(3), 2007
PMID: 18042203
A myb gene required for leaf trichome differentiation in Arabidopsis is expressed in stipules.
Oppenheimer DG, Herman PL, Sivakumaran S, Esch J, Marks MD., Cell 67(3), 1991
PMID: 1934056
WEREWOLF, a MYB-related protein in Arabidopsis, is a position-dependent regulator of epidermal cell patterning.
Lee MM, Schiefelbein J., Cell 99(5), 1999
PMID: 10589676
Functional diversification of MYB23 and GL1 genes in trichome morphogenesis and initiation.
Kirik V, Lee MM, Wester K, Herrmann U, Zheng Z, Oppenheimer D, Schiefelbein J, Hulskamp M., Development 132(7), 2005
PMID: 15728674
Trichomes: different regulatory networks lead to convergent structures.
Serna L, Martin C., Trends Plant Sci. 11(6), 2006
PMID: 16697247
Evolutionary analysis of the MIXTA gene family highlights potential targets for the study of cellular differentiation.
Brockington SF, Alvarez-Fernandez R, Landis JB, Alcorn K, Walker RH, Thomas MM, Hileman LC, Glover BJ., Mol. Biol. Evol. 30(3), 2012
PMID: 23188591
Development of three different cell types is associated with the activity of a specific MYB transcription factor in the ventral petal of Antirrhinum majus flowers.
Perez-Rodriguez M, Jaffe FW, Butelli E, Glover BJ, Martin C., Development 132(2), 2004
PMID: 15604096
Molecular analysis of the anthocyanin2 gene of petunia and its role in the evolution of flower color.
Quattrocchio F, Wing J, van der Woude K, Souer E, de Vetten N, Mol J, Koes R., Plant Cell 11(8), 1999
PMID: 10449578
Activation tagging identifies a conserved MYB regulator of phenylpropanoid biosynthesis.
Borevitz JO, Xia Y, Blount J, Dixon RA, Lamb C., Plant Cell 12(12), 2000
PMID: 11148285
A small family of MYB-regulatory genes controls floral pigmentation intensity and patterning in the genus Antirrhinum.
Schwinn K, Venail J, Shang Y, Mackay S, Alm V, Butelli E, Oyama R, Bailey P, Davies K, Martin C., Plant Cell 18(4), 2006
PMID: 16531495
Regulation of the anthocyanin biosynthetic pathway by the TTG1/bHLH/Myb transcriptional complex in Arabidopsis seedlings.
Gonzalez A, Zhao M, Leavitt JM, Lloyd AM., Plant J. 53(5), 2007
PMID: 18036197
On the question of the mutual exclusiveness of batalains and anthocyanins
Kimler L, Mears J, Mabry TJ, Rösler H., 1970
Zur Kenntnis der Farbstoffe der Roten Rübe, II
Schmidt OT, Schönleben W., 1957
Anthocyanins and betalains: evolution of the mutually exclusive pathways
Stafford HA., 1994
Inheritance of some major color types in beets
Keller W., 1936
Linkage among the R, Y and Bl loci in table beet.
Goldman IL, Austin D., Theor. Appl. Genet. 100(3/4), 2000
PMID: IND22069524
The beet R locus encodes a new cytochrome P450 required for red betalain production.
Hatlestad GJ, Sunnadeniya RM, Akhavan NA, Gonzalez A, Goldman IL, McGrath JM, Lloyd AM., Nat. Genet. 44(7), 2012
PMID: 22660548
Characterization and functional identification of a novel plant 4,5-extradiol dioxygenase involved in betalain pigment biosynthesis in Portulaca grandiflora.
Christinet L, Burdet FX, Zaiko M, Hinz U, Zryd JP., Plant Physiol. 134(1), 2004
PMID: 14730069
Identification of key amino acids for the evolution of promoter target specificity of anthocyanin and proanthocyanidin regulating MYB factors.
Heppel SC, Jaffe FW, Takos AM, Schellmann S, Rausch T, Walker AR, Bogs J., Plant Mol. Biol. 82(4-5), 2013
PMID: 23689818
The strawberry FaMYB1 transcription factor suppresses anthocyanin and flavonol accumulation in transgenic tobacco.
Aharoni A, De Vos CH, Wein M, Sun Z, Greco R, Kroon A, Mol JN, O'Connell AP., Plant J. 28(3), 2001
PMID: 11722774
Characterization of a grapevine R2R3-MYB transcription factor that regulates the phenylpropanoid pathway.
Deluc L, Barrieu F, Marchive C, Lauvergeat V, Decendit A, Richard T, Carde JP, Merillon JM, Hamdi S., Plant Physiol. 140(2), 2005
PMID: 16384897
The myb-homologous P gene controls phlobaphene pigmentation in maize floral organs by directly activating a flavonoid biosynthetic gene subset.
Grotewold E, Drummond BJ, Bowen B, Peterson T., Cell 76(3), 1994
PMID: 8313474
The grapevine R2R3-MYB transcription factor VvMYBF1 regulates flavonol synthesis in developing grape berries.
Czemmel S, Stracke R, Weisshaar B, Cordon N, Harris NN, Walker AR, Robinson SP, Bogs J., Plant Physiol. 151(3), 2009
PMID: 19741049
Differential regulation of closely related R2R3-MYB transcription factors controls flavonol accumulation in different parts of the Arabidopsis thaliana seedling.
Stracke R, Ishihara H, Huep G, Barsch A, Mehrtens F, Niehaus K, Weisshaar B., Plant J. 50(4), 2007
PMID: 17419845
The Arabidopsis transcription factor MYB12 is a flavonol-specific regulator of phenylpropanoid biosynthesis.
Mehrtens F, Kranz H, Bednarek P, Weisshaar B., Plant Physiol. 138(2), 2005
PMID: 15923334
Beta vulgaris L.: The characterization of three polyphenols isolated from the leaves
Gardner RL, Kerst AF, Wilson DM, Payne MG., 1967
Flavonols and C-glycosylflavonoids of the Caryophyllales
Richardson M., 1978
Basic local alignment search tool.
Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ., J. Mol. Biol. 215(3), 1990
PMID: 2231712
WebLogo: a sequence logo generator.
Crooks GE, Hon G, Chandonia JM, Brenner SE., Genome Res. 14(6), 2004
PMID: 15173120
RobiNA: a user-friendly, integrated software solution for RNA-Seq-based transcriptomics.
Lohse M, Bolger AM, Nagel A, Fernie AR, Lunn JE, Stitt M, Usadel B., Nucleic Acids Res. 40(Web Server issue), 2012
PMID: 22684630
TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions.
Kim D, Pertea G, Trapnell C, Pimentel H, Kelley R, Salzberg SL., Genome Biol. 14(4), 2013
PMID: 23618408
The Sequence Alignment/Map format and SAMtools.
Li H, Handsaker B, Wysoker A, Fennell T, Ruan J, Homer N, Marth G, Abecasis G, Durbin R; 1000 Genome Project Data Processing Subgroup., Bioinformatics 25(16), 2009
PMID: 19505943
Differential expression analysis for sequence count data.
Anders S, Huber W., Genome Biol. 11(10), 2010
PMID: 20979621
Open source clustering software.
de Hoon MJ, Imoto S, Nolan J, Miyano S., Bioinformatics 20(9), 2004
PMID: 14871861
Java Treeview--extensible visualization of microarray data.
Saldanha AJ., Bioinformatics 20(17), 2004
PMID: 15180930
FRU (BHLH029) is required for induction of iron mobilization genes in Arabidopsis thaliana.
Jakoby M, Wang HY, Reidt W, Weisshaar B, Bauer P., FEBS Lett. 577(3), 2004
PMID: 15556641
The promoter of TL-DNA gene 5 controls the tissue-specific expression of chimaeric genes carried by a novel type of Agrobacterium binary vector
Koncz C, Schell J., 1986
Transactivation properties of parsley proline-rich bZIP transcription factors.
Sprenger-Haussels M, Weisshaar B., Plant J. 22(1), 2000
PMID: 10792815
TT2, TT8, and TTG1 synergistically specify the expression of BANYULS and proanthocyanidin biosynthesis in Arabidopsis thaliana.
Baudry A, Heim MA, Dubreucq B, Caboche M, Weisshaar B, Lepiniec L., Plant J. 39(3), 2004
PMID: 15255866
Analysis of PRODUCTION OF FLAVONOL GLYCOSIDES-dependent flavonol glycoside accumulation in Arabidopsis thaliana plants reveals MYB11-, MYB12- and MYB111-independent flavonol glycoside accumulation.
Stracke R, Jahns O, Keck M, Tohge T, Niehaus K, Fernie AR, Weisshaar B., New Phytol. 188(4), 2010
PMID: 20731781
Identification of UV/blue light-response elements in the Arabidopsis thaliana chalcone synthase promoter using a homologous protoplast transient expression system.
Hartmann U, Valentine WJ, Christie JM, Hays J, Jenkins GI, Weisshaar B., Plant Mol. Biol. 36(5), 1998
PMID: 9526507
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