PUB - Publikationen an der Universität Bielefeld

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• [61]
  

  2025 | Datenpublikation | PUB-ID: 2994643

  Holtgräwe, D., Ashraf, S., Weisshaar, B., and Viehöver, P. (2025). Transcriptomic analysis of Pinot Noir and Pinot Noir Precoce updated to PN40024.v5 reference datasets. Bielefeld University.

  PUB | Dateien verfügbar | DOI
   
• [60]
  

  2024 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2994723

  Schmidt, N., Maiwald, S., Mann, L., Weber, B., Seibt, K. M., Breitenbach, S., Liedtke, S., Menzel, G., Weisshaar, B., Holtgräwe, D., et al. (2024). BeetRepeats: reference sequences for genome and polymorphism annotation in sugar beet and wild relatives. BMC Research Notes 17:351.

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• [59]
  

  2023 | Datenpublikation | PUB-ID: 2966927

  Sielemann, K., Pucker, B., Orsini, E., Elashry, A., Schulte, L., Viehöver, P., Müller, A. E., Schechert, A., Weisshaar, B., Wulfhorst, M., et al. (2023). Genome assembly, structural and functional annotation, and mRNA coverage/length files for KWS2320ONT_v1.0 and Strube U2BvONT_v1.0. Bielefeld University.

  PUB | Dateien verfügbar | DOI
   
• [58]
  

  2023 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2980215

  Sielemann, K., Pucker, B., Orsini, E., Elashry, A., Schulte, L., Viehöver, P., Müller, A., Schechert, A., Weisshaar, B., and Holtgräwe, D. (2023). Genomic characterization of a nematode tolerance locus in sugar beet. BMC Genomics 24:748.

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• [57]
  

  2023 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2969571

  Schilbert, H., Holzenkamp, K., Viehöver, P., Holtgräwe, D., and Möllers, C. (2023). Homoeologous non-reciprocal translocation explains a major QTL for seed lignin content in oilseed rape (Brassica napus L.). Theoretical and Applied Genetics 136:172.

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• [56]
  

  2023 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2985152

  Schmidt, N., Sielemann, K., Breitenbach, S., Fuchs, J., Pucker, B., Weisshaar, B., Holtgräwe, D., and Heitkam, T. (2023). Repeat turnover meets stable chromosomes: repetitive DNA sequences mark speciation and gene pool boundaries in sugar beet and wild beets. The Plant Journal 118, 171-190.

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• [55]
  

  2023 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2985993

  Müllner, S., Frommer, B., Holtgräwe, D., Viehöver, P., Hüttel, B., Töpfer, R., Weisshaar, B., and Zyprian, E. (2023). Analysis of the Rpv12 locus in a haplotype‑separated grapevine genome sequence. Vitis: Journal of Grapevine Research 62, 77-80.

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• [54]
  

  2023 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2964982

  Frommer, B., Muellner, S., Holtgräwe, D., Viehöver, P., Huettel, B., Toepfer, R., Weisshaar, B., and Zyprian, E. M. (2023). Phased grapevine genome sequence assembly of an Rpv12 carrier for exploration of Rpv12 associated positional and functional Plasmopara viticola resistance genes. Frontiers in Plant Science 14:1180982.

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• [53]
  

  2023 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2978044

  Shi, X., Cao, S., Wang, X., Huang, S., Wang, Y., Liu, Z., Liu, W., Leng, X., Peng, Y., Wang, N., et al. (2023). The complete reference genome for grapevine (Vitis vinifera L.) genetics and breeding. Horticulture Research 10:uhad061.

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• [52]
  

  2023 | Datenpublikation | PUB-ID: 2966932

  Sielemann, K., Schmidt, N., Guzik, J., Kalina, N., Pucker, B., Viehöver, P., Breitenbach, S., Weisshaar, B., Heitkam, T., and Holtgräwe, D. (2023). Genome assembly and structural and functional annotation files for crop wild relatives of sugar beet. Bielefeld University.

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• [51]
  

  2023 | Preprint | Veröffentlicht | PUB-ID: 2980439

  Sielemann, K., Schmidt, N., Guzik, J., Kalina, N., Pucker, B., Viehöver, P., Breitenbach, S., Weisshaar, B., Heitkam, T., and Holtgräwe, D. (2023). Pangenome of cultivated beet and crop wild relatives reveals parental relationships of a tetraploid wild beet. bioRxiv.

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• [50]
  

  2023 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2967809

  Velt, A., Frommer, B., Blanc, S., Holtgräwe, D., Duchêne, É., Dumas, V., Grimplet, J., Hugueney, P., Lahaye, M., Kim, C., et al. (2023). An improved reference of the grapevine genome reasserts the origin of the PN40024 highly-homozygous genotype. G3 Genes|Genomes|Genetics 13:jkad067.

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• [49]
  

  2022 | Datenpublikation | PUB-ID: 2962793

  Frommer, B., Weisshaar, B., and Holtgräwe, D. (2022). Chromosome-scale haplotype genome sequence assemblies of ‘Börner’ and corresponding genome sequence annotations. Bielefeld University.

  PUB | Dateien verfügbar | DOI
   
• [48]
  

  2022 | Preprint | PUB-ID: 2964291

  Frommer, B., Hausmann, L., Holtgräwe, D., Viehöver, P., Hüttel, B., Reinhard, R., Töpfer, R., and Weisshaar, B. (2022). A fully phased interspecific grapevine rootstock genome sequence representing *V. riparia* and *V. cinerea* and allele-aware annotation of the phylloxera resistance locus *Rdv1*. bioRxiv.

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• [47]
  

  2022 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2963558

  Schilbert, H., Pucker, B., Ries, D., Viehöver, P., Micic, Z., Dreyer, F., Beckmann, K., Wittkop, B., Weisshaar, B., and Holtgräwe, D. (2022). Mapping-by-sequencing reveals genomic regions associated with seed quality parameters in <em>Brassica napus</em>. Genes 13:1131.

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• [46]
  

  2022 | Datenpublikation | PUB-ID: 2963492

  Pucker, B., Schilbert, H., Viehöver, P., Weisshaar, B., and Holtgräwe, D. (2022). Supplementary material related to MBS analysis of seed quality parameters in Brassica napus. Bielefeld University.

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• [45]
  

  2022 | Datenpublikation | PUB-ID: 2962800

  Frommer, B., Müllner, S., Weisshaar, B., and Holtgräwe, D. (2022). Phase-separated genome sequence assembly of the grapevine cultivar Gf.99-03 and its annotation. Bielefeld University.

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• [44]
  

  2022 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2958188

  Sielemann, K., Pucker, B., Schmidt, N., Viehöver, P., Weisshaar, B., Heitkam, T., and Holtgräwe, D. (2022). Complete pan-plastome sequences enable high resolution phylogenetic classification of sugar beet and closely related crop wild relatives. BMC Genomics 23:113.

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• [43]
  

  2022 | Datenpublikation | PUB-ID: 2962639

  Rosleff Sörensen, T., Frommer, B., Viehöver, P., Weisshaar, B., and Holtgräwe, D. (2022). Contig sequences derived from selected ‘Börner’ BACs assigned to either of the two parental haplotypes *V. riparia* or *V. cinerea* of the *Vitis* rootstock ‘Börner’. Bielefeld University.

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• [42]
  

  2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2952955

  Theine, J., Holtgräwe, D., Herzog, K., Schwander, F., Kicherer, A., Hausmann, L., Viehöver, P., Töpfer, R., and Weisshaar, B. (2021). Transcriptomic analysis of temporal shifts in berry development between two grapevine cultivars of the Pinot family reveals potential genes controlling ripening time. BMC Plant Biology 21:327.

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• [41]
  

  2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2956071

  Schilbert, H., Schöne, M., Baier, T., Busche, M., Viehöver, P., Weisshaar, B., and Holtgräwe, D. (2021). Characterization of the Brassica napus flavonol synthase gene family reveals bifunctional flavonol synthases. Frontiers in Plant Science 12:733762.

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• [40]
  

  2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2948771

  Matar, S., Kumar, A., Holtgräwe, D., Weisshaar, B., and Melzer, S. (2021). The transition to flowering in winter rapeseed during vernalization. Plant, Cell & Environment 44, 506-518.

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• [39]
  

  2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2948720

  Pucker, B., Schwandner, A., Becker, S., Hausmann, L., Viehöver, P., Töpfer, R., Weisshaar, B., and Holtgräwe, D. (2020). RNA-Seq Time Series of Vitis vinifera Bud Development Reveals Correlation of Expression Patterns with the Local Temperature Profile. Plants 9:1548.

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• [38]
  

  2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941655

  Holtgräwe, D., Rosleff Soerensen, T., Hausmann, L., Pucker, B., Viehöver, P., Töpfer, R., and Weisshaar, B. (2020). A Partially Phase-Separated Genome Sequence Assembly of the Vitis Rootstock ‘Börner’ (Vitis riparia × Vitis cinerea) and Its Exploitation for Marker Development and Targeted Mapping. Frontiers in Plant Science 11:156.

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• [37]
  

  2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2942459

  Frommer, B., Holtgräwe, D., Hausmann, L., Viehöver, P., Huettel, B., Töpfer, R., and Weisshaar, B. (2020). Genome Sequences of Both Organelles of the Grapevine Rootstock Cultivar ‘Börner’. Microbiology Resource Announcements 9:e01471-19.

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• [36]
  

  2020 | Datenpublikation | PUB-ID: 2941430

  Frommer, B., Holtgräwe, D., and Weisshaar, B. (2020). Dataset describing RNA editing sites in the chloroplast genome of 'Boerner' (Vitis riparia x Vitis cinerea). Bielefeld University.

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• [35]
  

  2020 | Datenpublikation | PUB-ID: 2941437

  Frommer, B., Holtgräwe, D., and Weisshaar, B. (2020). Dataset describing RNA editing sites in the mitochondrial genome of 'Boerner' (Vitis riparia x Vitis cinerea). Bielefeld University.

  PUB | Dateien verfügbar | DOI
   
• [34]
  

  2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2943420

  Vu, D. P., Martins Rodrigues, C., Jung, B., Meissner, G., Klemens, P. A. W., Holtgräwe, D., Fürtauer, L., Nägele, T., Nieberl, P., Pommerrenig, B., et al. (2020). Vacuolar sucrose homeostasis is critical for plant development, seed properties, and night-time survival in Arabidopsis. Journal of Experimental Botany 71, 4930-4943.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [33]
  

  2019 | Datenpublikation | PUB-ID: 2938180

  Holtgräwe, D., Pucker, B., Rosleff Sörensen, T., and Weisshaar, B. (2019). Heterozygous SNVs between BoeWGS1.0 and PN40024. Bielefeld University.

  PUB | Dateien verfügbar | DOI
   
• [32]
  

  2019 | Datenpublikation | PUB-ID: 2938178

  Holtgräwe, D., Pucker, B., Rosleff Sörensen, T., and Weisshaar, B. (2019). Homozygous SNVs between BoeWGS1.0 and PN40024. Bielefeld University.

  PUB | Dateien verfügbar | DOI
   
• [31]
  

  2019 | Datenpublikation | PUB-ID: 2938185

  Holtgräwe, D., Pucker, B., Rosleff Sörensen, T., and Weisshaar, B. (2019). Description and mapping positions of BoeWGS1.0 contigs. Bielefeld University.

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• [30]
  

  2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2935698

  Pucker, B., Holtgräwe, D., Stadermann, K. B., Frey, K., Huettel, B., Reinhardt, R., and Weisshaar, B. (2019). Chromosome-level sequence assembly reveals the structure of the Arabidopsis thaliana Nd-1 genome and its gene set. PLoS One 14:e0216233.

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• [29]
  

  2019 | Datenpublikation | PUB-ID: 2949309

  Pucker, B., Holtgräwe, D., Stadermann, K. B., and Weisshaar, B. (2019). Chromosome-level Assembly Reveals the Niederzenz (Nd-1) Genome Structure and Gene Set. Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), Seeland OT Gatersleben.

  PUB | Dateien verfügbar | DOI
   
• [28]
  

  2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2936315

  Kamal, N., Ochßner, I., Schwandner, A., Viehöver, P., Hausmann, L., Töpfer, R., Weisshaar, B., and Holtgräwe, D. (2019). Characterization of genes and alleles involved in the control of flowering time in grapevine. PLoS One 14:e0214703.

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• [27]
  

  2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2911903

  Capistrano-Gossmann, G. G., Ries, D., Holtgräwe, D., Minoche, A., Kraft, T., Frerichmann, S. L. M., Rosleff Sörensen, T., Dohm, J. C., González, I., Schilhabel, M., et al. (2017). Crop wild relative populations of Beta vulgaris allow direct mapping of agronomically important genes. Nature Communications 8:15708.

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• [26]
  

  2017 | Datenpublikation | PUB-ID: 2949668

  Dohm, J. C., Gonzalez, I., Holtgräwe, D., Minoche, A., Rosleff Sörensen, T., Weisshaar, B., and Himmelbauer, H. (2017). Beta vulgaris spp. maritima draft genome sequence assembly and structural prediction of protein coding genes. Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), Seeland OT Gatersleben.

  PUB | Dateien verfügbar | DOI
   
• [25]
  

  2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2915524

  Pucker, B., Holtgräwe, D., and Weisshaar, B. (2017). Consideration of non-canonical splice sites improves gene prediction on the Arabidopsis thaliana Niederzenz-1 genome sequence. BMC Research Notes 10:667.

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• [24]
  

  2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2905844

  Pucker, B., Holtgräwe, D., Rosleff Sörensen, T., Stracke, R., Viehöver, P., and Weisshaar, B. (2016). A de novo Genome Sequence Assembly of the Arabidopsis thaliana Accession Niederzenz-1 Displays Presence/Absence Variation and Strong Synteny. PLoS One 11:e0164321.

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• [23]
  

  2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2905177

  Stadermann, K. B., Holtgräwe, D., and Weisshaar, B. (2016). Chloroplast genome sequence of Arabidopsis thaliana accession Landsberg erecta assembled from Single-Molecule, Real-Time sequencing data. Genome Announcements 4:e00975-16.

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• [22]
  

  2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2901603

  Ries, D., Holtgräwe, D., Viehöver, P., and Weisshaar, B. (2016). Rapid gene identification in sugar beet using deep sequencing of DNA from phenotypic pools selected from breeding panels. BMC Genomics 17:236.

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• [21]
  

  2016 | Kurzbeitrag Konferenz / Poster | PUB-ID: 2905827

  Weisshaar, B., Himmelbauer, H., Schmidt, T., Holtgräwe, D., Minoche, A. E., Dohm, J., Stracke, R., Zakrzewski, F., Parol-Kryger, R., Stadermann, K. B., et al. (2016).“Sugar Beet BeetMap-3, and Steps to Improve the Genome Assembly and Genome Sequence Annotation (W875)”. Presented at the Plant and Animal Genome XXIV Conference, San Diego, USA.

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• [20]
  

  2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2775617

  Stadermann, K. B., Weisshaar, B., and Holtgräwe, D. (2015). SMRT sequencing only de novo assembly of the sugar beet (Beta vulgaris) chloroplast genome. BMC Bioinformatics 16:295.

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• [19]
  

  2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2764063

  Minoche, A. E., Dohm, J. C., Schneider, J., Holtgräwe, D., Viehöver, P., Montfort, M., Rosleff Sörensen, T., Weisshaar, B., and Himmelbauer, H. (2015). Exploiting single-molecule transcript sequencing for eukaryotic gene prediction. Genome Biology 16:184.

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• [18]
  

  2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2689802

  Fechter, I., Hausmann, L., Zyprian, E., Daum, M., Holtgräwe, D., Weisshaar, B., and Töpfer, R. (2014). QTL analysis of flowering time and ripening traits suggests an impact of a genomic region on linkage group 1 in Vitis. Theoretical and Applied Genetics 127, 1857-1872.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [17]
  

  2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2643946

  Dohm, J. C., Minoche, A. E., Holtgräwe, D., Capella-Gutiérrez, S., Zakrzewski, F., Tafer, H., Rupp, O., Rosleff Sörensen, T., Stracke, R., Reinhardt, R., et al. (2014). The genome of the recently domesticated crop plant sugar beet (Beta vulgaris). Nature 505, 546-549.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [16]
  

  2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2699085

  Holtgräwe, D., Rosleff Sörensen, T., Viehöver, P., Schneider, J., Schulz, B., Borchardt, D., Kraft, T., Himmelbauer, H., and Weisshaar, B. (2014). Reliable In Silico Identification of Sequence Polymorphisms and Their Application for Extending the Genetic Map of Sugar Beet (Beta vulgaris). PLoS ONE 9:e110113.

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• [15]
  

  2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2696778

  Stracke, R., Holtgräwe, D., Schneider, J., Pucker, B., Rosleff Sörensen, T., and Weisshaar, B. (2014). Genome-wide identification and characterisation of R2R3-MYB genes in sugar beet ( Beta vulgaris ). BMC Plant Biology 14:249.

  PUB | PDF | DOI | WoS | PubMed | Europe PMC
   
• [14]
  

  2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2678005

  Heitkam, T., Holtgräwe, D., Dohm, J. C., Minoche, A. E., Himmelbauer, H., Weisshaar, B., and Schmidt, T. (2014). Profiling of extensively diversified plant LINEs reveals distinct plant-specific subclades. The Plant Journal 79, 385-397.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [13]
  

  2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2684495

  Dally, N., Xiao, K., Holtgräwe, D., and Jung, C. (2014). The B2 flowering time locus of beet encodes a zinc finger transcription factor. Proceedings of the National Academy of Sciences 111, 10365-10370.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [12]
  

  2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2562610

  Weber, B., Heitkam, T., Holtgräwe, D., Weisshaar, B., Minoche, A. E., Dohm, J. C., Himmelbauer, H., and Schmidt, T. (2013). Highly diverse chromoviruses of Beta vulgaris are classified by chromodomains and chromosomal integration. Mobile DNA 4:8.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [11]
  

  2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2454417

  Dohm, J. C., Lange, C., Holtgräwe, D., Rosleff Sörensen, T., Borchardt, D., Schulz, B., Lehrach, H., Weisshaar, B., and Himmelbauer, H. (2012). Palaeohexaploid Ancestry for Caryophyllales Inferred from Extensive Gene-Based Physical and Genetic Mapping of the Sugar Beet Genome (Beta vulgaris). The Plant Journal 70, 528-540.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [10]
  

  2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2532965

  Wollrab, C., Heitkam, T., Holtgräwe, D., Weisshaar, B., Minoche, A. E., Dohm, J. C., Himmelbauer, H., and Schmidt, T. (2012). Evolutionary reshuffling in the Errantivirus lineage Elbe within the Beta vulgaris genome. The Plant Journal 72, 636-651.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [9]
  

  2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2457584

  Menzel, G., Krebs, C., Diez, M., Holtgräwe, D., Weisshaar, B., Minoche, A. E., Dohm, J. C., Himmelbauer, H., and Schmidt, T. (2012). Survey of sugar beet (Beta vulgaris L.) hAT transposons and MITE-like hATpin derivatives. Plant Molecular Biology 78, 393-405.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [8]
  

  2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2318497

  Holtgräwe, D., Weisshaar, B., and Himmelbauer, H. (2011). Die Entschlüsselung der Süßen: GABI-Future-Projekt erstellt Referenzsequenz des Genoms der Zuckerrübe. GenomXPress 2011, 4-6.

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• [7]
  

  2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1665020

  Zakrzewski, F., Wenke, T., Holtgräwe, D., Weisshaar, B., and Schmidt, T. (2010). Analysis of a c0t-1 library enables the targeted identification of minisatellite and satellite families in Beta vulgaris. BMC Plant Biology 10:8.

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• [6]
  

  2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1794548

  Lange, C., Mittermayr, L., Dohm, J. C., Holtgräwe, D., Weisshaar, B., and Himmelbauer, H. (2010). High-throughput identification of genetic markers using representational oligonucleotide microarray analysis. Theoretical and Applied Genetics 121, 549-565.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [5]
  

  2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1589556

  Wenke, T., Holtgräwe, D., Horn, A. V., Weisshaar, B., and Schmidt, T. (2009). An abundant and heavily truncated non-LTR retrotransposon (LINE) family in Beta vulgaris. Plant Molecular Biology 71, 585-597.

  PUB | DOI | WoS | PubMed | Europe PMC | GenBank
   
• [4]
  

  2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1586335

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