QTL analysis of flowering time and ripening traits suggests an impact of a genomic region on linkage group 1 in Vitis.

Fechter I, Hausmann L, Zyprian E, Daum M, Holtgräwe D, Weisshaar B, Töpfer R (2014)
Theoretical and Applied Genetics 127(9): 1857-1872.

Zeitschriftenaufsatz | Veröffentlicht | Englisch
 
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Autor*in
Fechter, Iris; Hausmann, Ludger; Zyprian, Eva; Daum, Margrit; Holtgräwe, DanielaUniBi ; Weisshaar, BerndUniBi ; Töpfer, Reinhard
Abstract / Bemerkung
In the recent past, genetic analyses of grapevine focused mainly on the identification of resistance loci for major diseases such as powdery and downy mildew. Currently, breeding programs make intensive use of these results by applying molecular markers linked to the resistance traits. However, modern genetics also allows to address additional agronomic traits that have considerable impact on the selection of grapevine cultivars. In this study, we have used linkage mapping for the identification and characterization of flowering time and ripening traits in a mapping population from a cross of V3125 ('Schiava Grossa' × 'Riesling') and the interspecific rootstock cultivar 'Börner' (Vitis riparia × Vitis cinerea). Comparison of the flowering time QTL mapping with data derived from a second independent segregating population identified several common QTLs. Especially a large region on linkage group 1 proved to be of special interest given the genetic divergence of the parents of the two populations. The proximity of the QTL region contains two CONSTANS-like genes. In accordance with data from other plants such as Arabidopsis thaliana and Oryza sativa, we hypothesize that these genes are major contributors to control the time of flowering in Vitis.
Erscheinungsjahr
2014
Zeitschriftentitel
Theoretical and Applied Genetics
Band
127
Ausgabe
9
Seite(n)
1857-1872
ISSN
0040-5752
eISSN
1432-2242
Page URI
https://pub.uni-bielefeld.de/record/2689802

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Fechter I, Hausmann L, Zyprian E, et al. QTL analysis of flowering time and ripening traits suggests an impact of a genomic region on linkage group 1 in Vitis. Theoretical and Applied Genetics. 2014;127(9):1857-1872.
Fechter, I., Hausmann, L., Zyprian, E., Daum, M., Holtgräwe, D., Weisshaar, B., & Töpfer, R. (2014). QTL analysis of flowering time and ripening traits suggests an impact of a genomic region on linkage group 1 in Vitis. Theoretical and Applied Genetics, 127(9), 1857-1872. doi:10.1007/s00122-014-2310-2
Fechter, Iris, Hausmann, Ludger, Zyprian, Eva, Daum, Margrit, Holtgräwe, Daniela, Weisshaar, Bernd, and Töpfer, Reinhard. 2014. “QTL analysis of flowering time and ripening traits suggests an impact of a genomic region on linkage group 1 in Vitis.”. Theoretical and Applied Genetics 127 (9): 1857-1872.
Fechter, I., Hausmann, L., Zyprian, E., Daum, M., Holtgräwe, D., Weisshaar, B., and Töpfer, R. (2014). QTL analysis of flowering time and ripening traits suggests an impact of a genomic region on linkage group 1 in Vitis. Theoretical and Applied Genetics 127, 1857-1872.
Fechter, I., et al., 2014. QTL analysis of flowering time and ripening traits suggests an impact of a genomic region on linkage group 1 in Vitis. Theoretical and Applied Genetics, 127(9), p 1857-1872.
I. Fechter, et al., “QTL analysis of flowering time and ripening traits suggests an impact of a genomic region on linkage group 1 in Vitis.”, Theoretical and Applied Genetics, vol. 127, 2014, pp. 1857-1872.
Fechter, I., Hausmann, L., Zyprian, E., Daum, M., Holtgräwe, D., Weisshaar, B., Töpfer, R.: QTL analysis of flowering time and ripening traits suggests an impact of a genomic region on linkage group 1 in Vitis. Theoretical and Applied Genetics. 127, 1857-1872 (2014).
Fechter, Iris, Hausmann, Ludger, Zyprian, Eva, Daum, Margrit, Holtgräwe, Daniela, Weisshaar, Bernd, and Töpfer, Reinhard. “QTL analysis of flowering time and ripening traits suggests an impact of a genomic region on linkage group 1 in Vitis.”. Theoretical and Applied Genetics 127.9 (2014): 1857-1872.

6 Zitationen in Europe PMC

Daten bereitgestellt von Europe PubMed Central.

Characterization of genes and alleles involved in the control of flowering time in grapevine.
Kamal N, Ochßner I, Schwandner A, Viehöver P, Hausmann L, Töpfer R, Weisshaar B, Holtgräwe D., PLoS One 14(7), 2019
PMID: 31269026
Extended diversity analysis of cultivated grapevine Vitis vinifera with 10K genome-wide SNPs.
Laucou V, Launay A, Bacilieri R, Lacombe T, Adam-Blondon AF, Bérard A, Chauveau A, de Andrés MT, Hausmann L, Ibáñez J, Le Paslier MC, Maghradze D, Martinez-Zapater JM, Maul E, Ponnaiah M, Töpfer R, Péros JP, Boursiquot JM., PLoS One 13(2), 2018
PMID: 29420602
Vitis Flower Sex Specification Acts Downstream and Independently of the ABCDE Model Genes.
Coito JL, Silva H, Ramos MJN, Montez M, Cunha J, Amâncio S, Costa MMR, Rocheta M., Front Plant Sci 9(), 2018
PMID: 30061913
Quantitative trait loci affecting pathogen resistance and ripening of grapevines.
Zyprian E, Zyprian E, Ochßner I, Schwander F, Šimon S, Hausmann L, Bonow-Rex M, Moreno-Sanz P, Grando MS, Wiedemann-Merdinoglu S, Merdinoglu D, Eibach R, Töpfer R., Mol Genet Genomics 291(4), 2016
PMID: 27038830
Comparative RNA-Seq profiling of berry development between table grape 'Kyoho' and its early-ripening mutant 'Fengzao'.
Guo DL, Xi FF, Yu YH, Zhang XY, Zhang GH, Zhong GY., BMC Genomics 17(1), 2016
PMID: 27729006

50 References

Daten bereitgestellt von Europe PubMed Central.

Mapping 245 SSR markers on the Vitis vinifera genome: a tool for grape genetics.
Adam-Blondon AF, Roux C, Claux D, Butterlin G, Merdinoglu D, This P., Theor. Appl. Genet. 109(5), 2004
PMID: 15184982
Genome sequence initiatives
Adam-Blondon AF, Jaillon O, Vezzulli S, Zharkikh A, Troggio M, Velasco R., 2011
VvCO and VvCOL1, two CONSTANS homologous genes, are regulated during flower induction and dormancy in grapevine buds.
Almada R, Cabrera N, Casaretto JA, Ruiz-Lara S, Gonzalez Villanueva E., Plant Cell Rep. 28(8), 2009
PMID: 19495771
The genetic basis of flowering responses to seasonal cues.
Andres F, Coupland G., Nat. Rev. Genet. 13(9), 2012
PMID: 22898651
Integration of floral inductive signals in Arabidopsis.
Blazquez MA, Weigel D., Nature 404(6780), 2000
PMID: 10786797
Gibberellins promote flowering of arabidopsis by activating the LEAFY promoter
Blazquez MA, Green R, Nilsson O, Sussman MR, Weigel D., Plant Cell 10(5), 1998
PMID: 9596637
A grapevine TFL1 homologue can delay flowering and alter floral development when overexpressed in heterologous species.
Boss PK, Sreekantan L, Thomas MR., Functional plant biology : FPB. 33(1), 2006
PMID: IND43876469
Genetic similarities among wine grape cultivars revealed by restriction fragment length polymorphism (RFLP) analysis
Bowers JE, Meredith CP., 1996
Development and characterization of additional microsatellite DNA markers for grape
Bowers JE, Dangl GS, Meredith CP., 1999
A genetic analysis of seed and berry weight in grapevine.
Cabezas JA, Cervera MT, Ruiz-Garcia L, Carreno J, Martinez-Zapater JM., Genome 49(12), 2006
PMID: 17426772
Floral meristem identity genes are expressed during tendril development in grapevine.
Calonje M, Cubas P, Martinez-Zapater JM, Carmona MJ., Plant Physiol. 135(3), 2004
PMID: 15247405
VFL, the grapevine FLORICAULA/LEAFY ortholog, is expressed in meristematic regions independently of their fate.
Carmona MJ, Cubas P, Martinez-Zapater JM., Plant Physiol. 130(1), 2002
PMID: 12226487
The FT/TFL1 gene family in grapevine.
Carmona MJ, Calonje M, Martinez-Zapater JM., Plant Mol. Biol. 63(5), 2006
PMID: 17160562
A molecular genetic perspective of reproductive development in grapevine.
Carmona MJ, Chaib J, Martinez-Zapater JM, Thomas MR., J. Exp. Bot. 59(10), 2008
PMID: 18596111
A set of microsatellite markers with long core repeat optimized for grape (Vitis spp.) genotyping.
Cipriani G, Marrazzo MT, Di Gaspero G, Pfeiffer A, Morgante M, Testolin R., BMC Plant Biol. 8(), 2008
PMID: 19087321
Berry and phenology-related traits in grapevine (Vitis vinifera L.): from quantitative trait loci to underlying genes.
Costantini L, Battilana J, Lamaj F, Fanizza G, Grando MS., BMC Plant Biol. 8(), 2008
PMID: 18419811
A gene controlling sex in grapevines placed on a molecular marker-based genetic map.
Dalbo MA, Ye GN, Weeden NF, Steinkellner H, Sefc KM, Reisch BI., Genome 43(2), 2000
PMID: 10791822
Isolation of (AC)n-microsatellites in Vitis vinifera L. and analysis of genetic background in grapevines under marker assisted selection.
Di Gaspero G, Cipriani G, Marrazzo MT, Andreetta D, Castro MJP, Peterlunger E, Testolin R., Mol. Breed. 15(1), 2005
PMID: IND43674571
Genetic mapping of grapevine ( Vitis vinifera L.) applied to the detection of QTLs for seedlessness and berry weight.
Doligez A, Bouquet A, Danglot Y, Lahogue F, Riaz S, Meredith P, Edwards J, This P., Theor. Appl. Genet. 105(5), 2002
PMID: 12582493
Towards the adaptation of grapevine varieties to climate change: QTLs and candidate genes for developmental stages.
Duchene E, Butterlin G, Dumas V, Merdinoglu D., Theor. Appl. Genet. 124(4), 2011
PMID: 22052019
Candidate gene association mapping of Arabidopsis flowering time.
Ehrenreich IM, Hanzawa Y, Chou L, Roe JL, Kover PX, Purugganan MD., Genetics 183(1), 2009
PMID: 19581446
Candidate genes within a 143 kb region of the flower sex locus in Vitis.
Fechter I, Hausmann L, Daum M, Sorensen TR, Viehover P, Weisshaar B, Topfer R., Mol. Genet. Genomics 287(3), 2012
PMID: 22258113
A putative NAP homolog specifically expressed during grapevine flower and berry development
Fernandez L, Ageorges A, Torregrosa L., 2006
Quantitative trait locus analysis of fungal disease resistance factors on a molecular map of grapevine.
Fischer BM, Salakhutdinov I, Akkurt M, Eibach R, Edwards KJ, Topfer R, Zyprian EM., Theor. Appl. Genet. 108(3), 2003
PMID: 14574452

AUTHOR UNKNOWN, 0
Expression analysis of flowering genes from seedling-stage to vineyard life of grapevine cv. Riesling.
Joly D, Perrin M, Gertz C, Kronenberger J, Demangeat G, Masson JE., Plant Sci. 166(6), 2004
PMID: IND43636235
The estimation of map distances from recombination values
Kosambi DD., 1944
Effect of day-length and gibberellic acid on the flowering of Arabidopsis
Langridge J., 1957

AUTHOR UNKNOWN, 0
A simple, inexpensive and environmentally friendly method for high throughput DNA extraction from grapevine (Vitis spp.)
Lemke L, Rex M, Zyprian E, Töpfer R., 2011
Phenological growth stages of the grapevine, Vitis vinifera L. ssp. vinifera. Codes and descriptions according to the extended BBCH scale
Lorenz DH, Eichhorn KW, Bleiholder H, Klose R, Meier U, Weber E., 1995
Genetic dissection of sex determinism, inflorescence morphology and downy mildew resistance in grapevine.
Marguerit E, Boury C, Manicki A, Donnart M, Butterlin G, Nemorin A, Wiedemann-Merdinoglu S, Merdinoglu D, Ollat N, Decroocq S., Theor. Appl. Genet. 118(7), 2009
PMID: 19238349
Identification of QTLs for seedlessness, berry size, and ripening date in a seedless × seedless table grape progeny
Mejía N, Gebauer M, Munoz L, Hewstone N, Hinrichsen P., 2007
Molecular, genetic and transcriptional evidence for a role of VvAGL11 in stenospermocarpic seedlessness in grapevine.
Mejia N, Soto B, Guerrero M, Casanueva X, Houel C, Miccono Mde L, Ramos R, Le Cunff L, Boursiquot JM, Hinrichsen P, Adam-Blondon AF., BMC Plant Biol. 11(), 2011
PMID: 21447172

AUTHOR UNKNOWN, 2009
A microsatellite marker based framework linkage map of Vitis vinifera L.
Riaz S, Dangl GS, Edwards KJ, Meredith CP., Theor. Appl. Genet. 108(5), 2003
PMID: 14605808
Flowering time regulation: photoperiod- and temperature-sensing in leaves.
Song YH, Ito S, Imaizumi T., Trends Plant Sci. 18(10), 2013
PMID: 23790253

AUTHOR UNKNOWN, 0

Van JW., 2004

Van JW., 2006
A high quality draft consensus sequence of the genome of a heterozygous grapevine variety.
Velasco R, Zharkikh A, Troggio M, Cartwright DA, Cestaro A, Pruss D, Pindo M, Fitzgerald LM, Vezzulli S, Reid J, Malacarne G, Iliev D, Coppola G, Wardell B, Micheletti D, Macalma T, Facci M, Mitchell JT, Perazzolli M, Eldredge G, Gatto P, Oyzerski R, Moretto M, Gutin N, Stefanini M, Chen Y, Segala C, Davenport C, Dematte L, Mraz A, Battilana J, Stormo K, Costa F, Tao Q, Si-Ammour A, Harkins T, Lackey A, Perbost C, Taillon B, Stella A, Solovyev V, Fawcett JA, Sterck L, Vandepoele K, Grando SM, Toppo S, Moser C, Lanchbury J, Bogden R, Skolnick M, Sgaramella V, Bhatnagar SK, Fontana P, Gutin A, Van de Peer Y, Salamini F, Viola R., PLoS ONE 2(12), 2007
PMID: 18094749
Eine neue genetische Karte der Weinrebe aus der Kreuzung “Gf.Ga-47-42” × “Villard blanc”
Zyprian E, Eibach R, Töpfer T., 2006
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