PUB - Publikationen an der Universität Bielefeld

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94 Einträge gefunden, die diesen Artikel zitieren von denen 10 angezeigt werden

UNIPROT

40 Einträge gefunden, die diesen Artikel zitieren von denen 10 angezeigt werden

De novo genome sequencing and comparative genomics of date palm (Phoenix dactylifera).
Al-Dous EK, George B, Al-Mahmoud ME, Al-Jaber MY, Wang H, Salameh YM, Al-Azwani EK, Chaluvadi S, Pontaroli AC, DeBarry J, Arondel V, Ohlrogge J, Saie IJ, Suliman-Elmeer KM, Bennetzen JL, Kruegger RR, Malek JA., Nat. Biotechnol. 29(6), 2011
PMID: 21623354

Limitations of next-generation genome sequence assembly.
Alkan C, Sajjadian S, Eichler EE., Nat. Methods 8(1), 2010
PMID: 21102452

The genome of Theobroma cacao.
Argout X, Salse J, Aury JM, Guiltinan MJ, Droc G, Gouzy J, Allegre M, Chaparro C, Legavre T, Maximova SN, Abrouk M, Murat F, Fouet O, Poulain J, Ruiz M, Roguet Y, Rodier-Goud M, Barbosa-Neto JF, Sabot F, Kudrna D, Ammiraju JS, Schuster SC, Carlson JE, Sallet E, Schiex T, Dievart A, Kramer M, Gelley L, Shi Z, Berard A, Viot C, Boccara M, Risterucci AM, Guignon V, Sabau X, Axtell MJ, Ma Z, Zhang Y, Brown S, Bourge M, Golser W, Song X, Clement D, Rivallan R, Tahi M, Akaza JM, Pitollat B, Gramacho K, D'Hont A, Brunel D, Infante D, Kebe I, Costet P, Wing R, McCombie WR, Guiderdoni E, Quetier F, Panaud O, Wincker P, Bocs S, Lanaud C., Nat. Genet. 43(2), 2010
PMID: 21186351

Exceptional diversity, non-random distribution, and rapid evolution of retroelements in the B73 maize genome.
Baucom RS, Estill JC, Chaparro C, Upshaw N, Jogi A, Deragon JM, Westerman RP, Sanmiguel PJ, Bennetzen JL., PLoS Genet. 5(11), 2009
PMID: 19936065

Mammalian non-LTR retrotransposons: for better or worse, in sickness and in health.
Belancio VP, Hedges DJ, Deininger P., Genome Res. 18(3), 2008
PMID: 18256243

Analysis of the bread wheat genome using whole-genome shotgun sequencing.
Brenchley R, Spannagl M, Pfeifer M, Barker GL, D'Amore R, Allen AM, McKenzie N, Kramer M, Kerhornou A, Bolser D, Kay S, Waite D, Trick M, Bancroft I, Gu Y, Huo N, Luo MC, Sehgal S, Gill B, Kianian S, Anderson O, Kersey P, Dvorak J, McCombie WR, Hall A, Mayer KF, Edwards KJ, Bevan MW, Hall N., Nature 491(7426), 2012
PMID: 23192148

Hot L1s account for the bulk of retrotransposition in the human population.
Brouha B, Schustak J, Badge RM, Lutz-Prigge S, Farley AH, Moran JV, Kazazian HH Jr., Proc. Natl. Acad. Sci. U.S.A. 100(9), 2003
PMID: 12682288

Lineage-specific biology revealed by a finished genome assembly of the mouse.
Church DM, Goodstadt L, Hillier LW, Zody MC, Goldstein S, She X, Bult CJ, Agarwala R, Cherry JL, DiCuccio M, Hlavina W, Kapustin Y, Meric P, Maglott D, Birtle Z, Marques AC, Graves T, Zhou S, Teague B, Potamousis K, Churas C, Place M, Herschleb J, Runnheim R, Forrest D, Amos-Landgraf J, Schwartz DC, Cheng Z, Lindblad-Toh K, Eichler EE, Ponting CP; Mouse Genome Sequencing Consortium, Muzny DM, Dugan-Rocha S, Ding Y, Scherer SE, Buhay CJ, Cree A, Hernandez J, Holder M, Hume J, Jackson LR, Kovar C, Lee SL, Lewis LR, Metzker ML, Narareth LV, Sabo A, Sodergren E, Gibbs RA, Zody MC, FitzGerald M, Cook A, Jaffe DB, Garber M, Zimmer AR, Pirun M, Russell L, Sharpe T, Chaturvedi MK, Wilkinson J, LaButti K, Yang X, Bessette D, Allen NR, Nguyen C, Nguyen T, Dunbar C, Lubonja R, Matthews C, Liu X, Benamara M, Negash T, Lokyitsang T, Decktor K, Piqani B, Munson G, Tenzin P, Stone S, Macdonald P, Arachchi H, Abouelleil A, Lui A, Priest M, Gearin G, Brown A, Aftuck L, Shea T, Sykes S, Berlin A, Chu J, Dooley K, Hagopian D, Hall J, Hafez N, Smith CL, Olandt P, Miller K, Ventkataraman V, Rachupka A, Dorris L 3rd, Ayotte L, Mabbitt R, Erickson J, Horn A, An P, Naylor JW, Settipalli S, Lander ES, Lindblad-Toh K, Wilson RK, Graves TA, Fulton RS, Rock SM, Hillier LW, Chinwalla AT, Bernard K, Courtney LP, Fronick C, Fulton LL, O'Laughlin M, Kremitzki CL, Minx PJ, Nelson JO, Schatzkamer KL, Strong C, Wollam AM, Weinstock GM, Yang SP, Rogers J, Grafham D, Humphray S, Nicholson C, Bird C, Brown AJ, Burton J, Clee C, Hunt A, Jones MC, Lloyd C, Matthews L, Mclaren K, Mclaren S, McLay K, Palmer SA, Plumb R, Shownkeen R, Sims S, Quail MA, Whitehead SL, Willey DL., PLoS Biol. 7(5), 2009
PMID: 19468303

High-resolution mapping of YACs and the single-copy gene Hs1(pro-1) on Beta vulgaris chromosomes by multi-colour fluorescence in situ hybridization.
Desel C, Jung C, Cai D, Kleine M, Schmidt T., Plant Mol. Biol. 45(1), 2001
PMID: 11247602

Genome size reduction through illegitimate recombination counteracts genome expansion in Arabidopsis.
Devos KM, Brown JK, Bennetzen JL., Genome Res. 12(7), 2002
PMID: 12097344

Functional differences between the human LINE retrotransposon and retroviral reverse transcriptases for in vivo mRNA reverse transcription.
Dhellin O, Maestre J, Heidmann T., EMBO J. 16(21), 1997
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The banana (Musa acuminata) genome and the evolution of monocotyledonous plants.
D'Hont A, Denoeud F, Aury JM, Baurens FC, Carreel F, Garsmeur O, Noel B, Bocs S, Droc G, Rouard M, Da Silva C, Jabbari K, Cardi C, Poulain J, Souquet M, Labadie K, Jourda C, Lengelle J, Rodier-Goud M, Alberti A, Bernard M, Correa M, Ayyampalayam S, Mckain MR, Leebens-Mack J, Burgess D, Freeling M, Mbeguie-A-Mbeguie D, Chabannes M, Wicker T, Panaud O, Barbosa J, Hribova E, Heslop-Harrison P, Habas R, Rivallan R, Francois P, Poiron C, Kilian A, Burthia D, Jenny C, Bakry F, Brown S, Guignon V, Kema G, Dita M, Waalwijk C, Joseph S, Dievart A, Jaillon O, Leclercq J, Argout X, Lyons E, Almeida A, Jeridi M, Dolezel J, Roux N, Risterucci AM, Weissenbach J, Ruiz M, Glaszmann JC, Quetier F, Yahiaoui N, Wincker P., Nature 488(7410), 2012
PMID: 22801500

The genome of sugar beet (Beta vulgaris) a recently domesticated crop
Dohm, Nature 505(), 2013

SoyTEdb: a comprehensive database of transposable elements in the soybean genome.
Du J, Grant D, Tian Z, Nelson RT, Zhu L, Shoemaker RC, Ma J., BMC Genomics 11(), 2010
PMID: 20163715

Profile hidden Markov models.
Eddy SR., Bioinformatics 14(9), 1998
PMID: 9918945

MUSCLE: a multiple sequence alignment method with reduced time and space complexity.
Edgar RC., BMC Bioinformatics 5(), 2004
PMID: 15318951

Comparative genomic paleontology across plant kingdom reveals the dynamics of TE-driven genome evolution.
El Baidouri M, Panaud O., Genome Biol Evol 5(5), 2013
PMID: 23426643

A widespread class of reverse transcriptase-related cellular genes.
Gladyshev EA, Arkhipova IR., Proc. Natl. Acad. Sci. U.S.A. 108(51), 2011
PMID: 21876125

Identification, characterization and distribution of transposable elements in the flax (Linum usitatissimum L.) genome.
Gonzalez LG, Deyholos MK., BMC Genomics 13(), 2012
PMID: 23171245

Non-long terminal repeat (non-LTR) retrotransposons: mechanisms, recent developments, and unanswered questions.
Han JS., Mob DNA 1(1), 2010
PMID: 20462415

Phylogenetic determination of the pace of transposable element proliferation in plants: copia and LINE-like elements in Gossypium.
Hawkins JS, Hu G, Rapp RA, Grafenberg JL, Wendel JF., Genome 51(1), 2008
PMID: 18356935

BNR - a LINE family from Beta vulgaris - contains a RRM domain in open reading frame 1 and defines a L1 sub-clade present in diverse plant genomes.
Heitkam T, Schmidt T., Plant J. 59(6), 2009
PMID: 19473321

In-situ hybridization with automated chromosome denaturation
Heslop-Harrison, Technique 3(), 1991

Understanding Mediterranean-Californian disjunctions: molecular evidence from Chenopodiaceae-Betoideae
Hohmann, Taxon 55(), 2006

The zebrafish reference genome sequence and its relationship to the human genome.
Howe K, Clark MD, Torroja CF, Torrance J, Berthelot C, Muffato M, Collins JE, Humphray S, McLaren K, Matthews L, McLaren S, Sealy I, Caccamo M, Churcher C, Scott C, Barrett JC, Koch R, Rauch GJ, White S, Chow W, Kilian B, Quintais LT, Guerra-Assuncao JA, Zhou Y, Gu Y, Yen J, Vogel JH, Eyre T, Redmond S, Banerjee R, Chi J, Fu B, Langley E, Maguire SF, Laird GK, Lloyd D, Kenyon E, Donaldson S, Sehra H, Almeida-King J, Loveland J, Trevanion S, Jones M, Quail M, Willey D, Hunt A, Burton J, Sims S, McLay K, Plumb B, Davis J, Clee C, Oliver K, Clark R, Riddle C, Elliot D, Eliott D, Threadgold G, Harden G, Ware D, Begum S, Mortimore B, Mortimer B, Kerry G, Heath P, Phillimore B, Tracey A, Corby N, Dunn M, Johnson C, Wood J, Clark S, Pelan S, Griffiths G, Smith M, Glithero R, Howden P, Barker N, Lloyd C, Stevens C, Harley J, Holt K, Panagiotidis G, Lovell J, Beasley H, Henderson C, Gordon D, Auger K, Wright D, Collins J, Raisen C, Dyer L, Leung K, Robertson L, Ambridge K, Leongamornlert D, McGuire S, Gilderthorp R, Griffiths C, Manthravadi D, Nichol S, Barker G, Whitehead S, Kay M, Brown J, Murnane C, Gray E, Humphries M, Sycamore N, Barker D, Saunders D, Wallis J, Babbage A, Hammond S, Mashreghi-Mohammadi M, Barr L, Martin S, Wray P, Ellington A, Matthews N, Ellwood M, Woodmansey R, Clark G, Cooper J, Cooper J, Tromans A, Grafham D, Skuce C, Pandian R, Andrews R, Harrison E, Kimberley A, Garnett J, Fosker N, Hall R, Garner P, Kelly D, Bird C, Palmer S, Gehring I, Berger A, Dooley CM, Ersan-Urun Z, Eser C, Geiger H, Geisler M, Karotki L, Kirn A, Konantz J, Konantz M, Oberlander M, Rudolph-Geiger S, Teucke M, Lanz C, Raddatz G, Osoegawa K, Zhu B, Rapp A, Widaa S, Langford C, Yang F, Schuster SC, Carter NP, Harrow J, Ning Z, Herrero J, Searle SM, Enright A, Geisler R, Plasterk RH, Lee C, Westerfield M, de Jong PJ, Zon LI, Postlethwait JH, Nusslein-Volhard C, Hubbard TJ, Roest Crollius H, Rogers J, Stemple DL., Nature 496(7446), 2013
PMID: 23594743

The history and disposition of transposable elements in polyploid Gossypium.
Hu G, Hawkins JS, Grover CE, Wendel JF., Genome 53(8), 2010
PMID: 20725147

ETE: a python Environment for Tree Exploration.
Huerta-Cepas J, Dopazo J, Gabaldon T., BMC Bioinformatics 11(), 2010
PMID: 20070885

The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro F, Anthouard V, Vico V, Del Fabbro C, Alaux M, Di Gaspero G, Dumas V, Felice N, Paillard S, Juman I, Moroldo M, Scalabrin S, Canaguier A, Le Clainche I, Malacrida G, Durand E, Pesole G, Laucou V, Chatelet P, Merdinoglu D, Delledonne M, Pezzotti M, Lecharny A, Scarpelli C, Artiguenave F, Pe ME, Valle G, Morgante M, Caboche M, Adam-Blondon AF, Weissenbach J, Quetier F, Wincker P; French-Italian Public Consortium for Grapevine Genome Characterization., Nature 449(7161), 2007
PMID: 17721507

Repbase Update, a database of eukaryotic repetitive elements.
Jurka J, Kapitonov VV, Pavlicek A, Klonowski P, Kohany O, Walichiewicz J., Cytogenet. Genome Res. 110(1-4), 2005
PMID: 16093699

Simple and fast classification of non-LTR retrotransposons based on phylogeny of their RT domain protein sequences.
Kapitonov VV, Tempel S, Jurka J., Gene 448(2), 2009
PMID: 19651192

Contrasting evolutionary dynamics between angiosperm and mammalian genomes.
Kejnovsky E, Leitch IJ, Leitch AR., Trends Ecol. Evol. (Amst.) 24(10), 2009
PMID: 19665255

Molecular evolution and tempo of amplification of human LINE-1 retrotransposons since the origin of primates.
Khan H, Smit A, Boissinot S., Genome Res. 16(1), 2005
PMID: 16344559

Non-LTR retrotransposons encode noncanonical RRM domains in their first open reading frame.
Khazina E, Weichenrieder O., Proc. Natl. Acad. Sci. U.S.A. 106(3), 2009
PMID: 19139409

Two-step regulation and continuous retrotransposition of the rice LINE-type retrotransposon Karma.
Komatsu M, Shimamoto K, Kyozuka J., Plant Cell 15(8), 2003
PMID: 12897263

Initial sequencing and analysis of the human genome.
Lander ES, Linton LM, Birren B, Nusbaum C, Zody MC, Baldwin J, Devon K, Dewar K, Doyle M, FitzHugh W, Funke R, Gage D, Harris K, Heaford A, Howland J, Kann L, Lehoczky J, LeVine R, McEwan P, McKernan K, Meldrim J, Mesirov JP, Miranda C, Morris W, Naylor J, Raymond C, Rosetti M, Santos R, Sheridan A, Sougnez C, Stange-Thomann Y, Stojanovic N, Subramanian A, Wyman D, Rogers J, Sulston J, Ainscough R, Beck S, Bentley D, Burton J, Clee C, Carter N, Coulson A, Deadman R, Deloukas P, Dunham A, Dunham I, Durbin R, French L, Grafham D, Gregory S, Hubbard T, Humphray S, Hunt A, Jones M, Lloyd C, McMurray A, Matthews L, Mercer S, Milne S, Mullikin JC, Mungall A, Plumb R, Ross M, Shownkeen R, Sims S, Waterston RH, Wilson RK, Hillier LW, McPherson JD, Marra MA, Mardis ER, Fulton LA, Chinwalla AT, Pepin KH, Gish WR, Chissoe SL, Wendl MC, Delehaunty KD, Miner TL, Delehaunty A, Kramer JB, Cook LL, Fulton RS, Johnson DL, Minx PJ, Clifton SW, Hawkins T, Branscomb E, Predki P, Richardson P, Wenning S, Slezak T, Doggett N, Cheng JF, Olsen A, Lucas S, Elkin C, Uberbacher E, Frazier M, Gibbs RA, Muzny DM, Scherer SE, Bouck JB, Sodergren EJ, Worley KC, Rives CM, Gorrell JH, Metzker ML, Naylor SL, Kucherlapati RS, Nelson DL, Weinstock GM, Sakaki Y, Fujiyama A, Hattori M, Yada T, Toyoda A, Itoh T, Kawagoe C, Watanabe H, Totoki Y, Taylor T, Weissenbach J, Heilig R, Saurin W, Artiguenave F, Brottier P, Bruls T, Pelletier E, Robert C, Wincker P, Smith DR, Doucette-Stamm L, Rubenfield M, Weinstock K, Lee HM, Dubois J, Rosenthal A, Platzer M, Nyakatura G, Taudien S, Rump A, Yang H, Yu J, Wang J, Huang G, Gu J, Hood L, Rowen L, Madan A, Qin S, Davis RW, Federspiel NA, Abola AP, Proctor MJ, Myers RM, Schmutz J, Dickson M, Grimwood J, Cox DR, Olson MV, Kaul R, Raymond C, Shimizu N, Kawasaki K, Minoshima S, Evans GA, Athanasiou M, Schultz R, Roe BA, Chen F, Pan H, Ramser J, Lehrach H, Reinhardt R, McCombie WR, de la Bastide M, Dedhia N, Blocker H, Hornischer K, Nordsiek G, Agarwala R, Aravind L, Bailey JA, Bateman A, Batzoglou S, Birney E, Bork P, Brown DG, Burge CB, Cerutti L, Chen HC, Church D, Clamp M, Copley RR, Doerks T, Eddy SR, Eichler EE, Furey TS, Galagan J, Gilbert JG, Harmon C, Hayashizaki Y, Haussler D, Hermjakob H, Hokamp K, Jang W, Johnson LS, Jones TA, Kasif S, Kaspryzk A, Kennedy S, Kent WJ, Kitts P, Koonin EV, Korf I, Kulp D, Lancet D, Lowe TM, McLysaght A, Mikkelsen T, Moran JV, Mulder N, Pollara VJ, Ponting CP, Schuler G, Schultz J, Slater G, Smit AF, Stupka E, Szustakowki J, Thierry-Mieg D, Thierry-Mieg J, Wagner L, Wallis J, Wheeler R, Williams A, Wolf YI, Wolfe KH, Yang SP, Yeh RF, Collins F, Guyer MS, Peterson J, Felsenfeld A, Wetterstrand KA, Patrinos A, Morgan MJ, de Jong P, Catanese JJ, Osoegawa K, Shizuya H, Choi S, Chen YJ, Szustakowki J; International Human Genome Sequencing Consortium., Nature 409(6822), 2001
PMID: 11237011

Different evolutionary fates of recently integrated human and chimpanzee LINE-1 retrotransposons.
Lee J, Cordaux R, Han K, Wang J, Hedges DJ, Liang P, Batzer MA., Gene 390(1-2), 2006
PMID: 17055192

Draft genome of the wheat A-genome progenitor Triticum urartu.
Ling HQ, Zhao S, Liu D, Wang J, Sun H, Zhang C, Fan H, Li D, Dong L, Tao Y, Gao C, Wu H, Li Y, Cui Y, Guo X, Zheng S, Wang B, Yu K, Liang Q, Yang W, Lou X, Chen J, Feng M, Jian J, Zhang X, Luo G, Jiang Y, Liu J, Wang Z, Sha Y, Zhang B, Wu H, Tang D, Shen Q, Xue P, Zou S, Wang X, Liu X, Wang F, Yang Y, An X, Dong Z, Zhang K, Zhang X, Luo MC, Dvorak J, Tong Y, Wang J, Yang H, Li Z, Wang D, Zhang A, Wang J., Nature 496(7443), 2013
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Epigenetic regulation of transposable elements in plants.
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The Gypsy Database (GyDB) of mobile genetic elements: release 2.0
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Recombination, rearrangement, reshuffling, and divergence in a centromeric region of rice.
Ma J, Bennetzen JL., Proc. Natl. Acad. Sci. U.S.A. 103(2), 2005
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Analyses of LTR-retrotransposon structures reveal recent and rapid genomic DNA loss in rice.
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The age and evolution of non-LTR retrotransposable elements.
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Nucleic acid chaperone properties of ORF1p from the non-LTR retrotransposon, LINE-1
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Ultra-fast sequence clustering from similarity networks with SiLiX.
Miele V, Penel S, Duret L., BMC Bioinformatics 12(), 2011
PMID: 21513511

The draft genome of the transgenic tropical fruit tree papaya (Carica papaya Linnaeus).
Ming R, Hou S, Feng Y, Yu Q, Dionne-Laporte A, Saw JH, Senin P, Wang W, Ly BV, Lewis KL, Salzberg SL, Feng L, Jones MR, Skelton RL, Murray JE, Chen C, Qian W, Shen J, Du P, Eustice M, Tong E, Tang H, Lyons E, Paull RE, Michael TP, Wall K, Rice DW, Albert H, Wang ML, Zhu YJ, Schatz M, Nagarajan N, Acob RA, Guan P, Blas A, Wai CM, Ackerman CM, Ren Y, Liu C, Wang J, Wang J, Na JK, Shakirov EV, Haas B, Thimmapuram J, Nelson D, Wang X, Bowers JE, Gschwend AR, Delcher AL, Singh R, Suzuki JY, Tripathi S, Neupane K, Wei H, Irikura B, Paidi M, Jiang N, Zhang W, Presting G, Windsor A, Navajas-Perez R, Torres MJ, Feltus FA, Porter B, Li Y, Burroughs AM, Luo MC, Liu L, Christopher DA, Mount SM, Moore PH, Sugimura T, Jiang J, Schuler MA, Friedman V, Mitchell-Olds T, Shippen DE, dePamphilis CW, Palmer JD, Freeling M, Paterson AH, Gonsalves D, Wang L, Alam M., Nature 452(7190), 2008
PMID: 18432245

ATLN elements, LINEs from Arabidopsis thaliana: identification and characterization.
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The Norway spruce genome sequence and conifer genome evolution.
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PMID: 23698360

The TIGR Rice Genome Annotation Resource: improvements and new features.
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MyHits: a new interactive resource for protein annotation and domain identification.
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The flowering world: a tale of duplications.
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Ribosomal DNA spacer-length polymorphisms in barley: mendelian inheritance, chromosomal location, and population dynamics.
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PMID: 6096873

Site-specific accumulation of a LINE-like retrotransposon in a sex chromosome of the dioecious plant Cannabis sativa.
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PMID: 11202435

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Physical mapping of rRNA genes by fluorescent in-situ hybridzation and structural analysis of 5S rRNA genes and intergenic spacer sequences in sugar beet (Beta vulgaris).
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PMID: IND20435298

Genome sequence of the palaeopolyploid soybean.
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PMID: 20075913

The B73 maize genome: complexity, diversity, and dynamics.
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PMID: 19965430

Cin4, an insert altering the structure of the A1 gene in Zea mays, exhibits properties of nonviral retrotransposons.
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