Diversity of a complex centromeric satellite and molecular characterization of dispersed sequence families in sugar beet (Beta vulgaris)

Menzel G, Dechyeva D, Wenke T, Holtgräwe D, Weisshaar B, Schmidt T (2008)
Annals of Botany 102(4): 521-530.

Zeitschriftenaufsatz | Veröffentlicht | Englisch
 
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DOI
Autor*in
Menzel, Gerhard; Dechyeva, Daryna; Wenke, Torsten; Holtgräwe, DanielaUniBi ; Weisshaar, BerndUniBi ; Schmidt, Thomas
Einrichtung
Fakultät für Biologie > Genetik und Genomik der Pflanzen
Centrum für Biotechnologie > Arbeitsgruppe B. Weisshaar
Centrum für Biotechnologie > Institut für Genomforschung und Systembiologie
Stichworte
dispersed repeats; Beta vulgaris; satellite DNA; FISH
Erscheinungsjahr
2008
Zeitschriftentitel
Annals of Botany
Band
102
Ausgabe
4
Seite(n)
521-530
ISSN
0305-7364
eISSN
1095-8290
Page URI
https://pub.uni-bielefeld.de/record/1586335

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Menzel G, Dechyeva D, Wenke T, Holtgräwe D, Weisshaar B, Schmidt T. Diversity of a complex centromeric satellite and molecular characterization of dispersed sequence families in sugar beet (Beta vulgaris). Annals of Botany. 2008;102(4):521-530.
Menzel, G., Dechyeva, D., Wenke, T., Holtgräwe, D., Weisshaar, B., & Schmidt, T. (2008). Diversity of a complex centromeric satellite and molecular characterization of dispersed sequence families in sugar beet (Beta vulgaris). Annals of Botany, 102(4), 521-530. https://doi.org/10.1093/aob/mcn131
Menzel, Gerhard, Dechyeva, Daryna, Wenke, Torsten, Holtgräwe, Daniela, Weisshaar, Bernd, and Schmidt, Thomas. 2008. “Diversity of a complex centromeric satellite and molecular characterization of dispersed sequence families in sugar beet (Beta vulgaris)”. Annals of Botany 102 (4): 521-530.
Menzel, G., Dechyeva, D., Wenke, T., Holtgräwe, D., Weisshaar, B., and Schmidt, T. (2008). Diversity of a complex centromeric satellite and molecular characterization of dispersed sequence families in sugar beet (Beta vulgaris). Annals of Botany 102, 521-530.
Menzel, G., et al., 2008. Diversity of a complex centromeric satellite and molecular characterization of dispersed sequence families in sugar beet (Beta vulgaris). Annals of Botany, 102(4), p 521-530.
G. Menzel, et al., “Diversity of a complex centromeric satellite and molecular characterization of dispersed sequence families in sugar beet (Beta vulgaris)”, Annals of Botany, vol. 102, 2008, pp. 521-530.
Menzel, G., Dechyeva, D., Wenke, T., Holtgräwe, D., Weisshaar, B., Schmidt, T.: Diversity of a complex centromeric satellite and molecular characterization of dispersed sequence families in sugar beet (Beta vulgaris). Annals of Botany. 102, 521-530 (2008).
Menzel, Gerhard, Dechyeva, Daryna, Wenke, Torsten, Holtgräwe, Daniela, Weisshaar, Bernd, and Schmidt, Thomas. “Diversity of a complex centromeric satellite and molecular characterization of dispersed sequence families in sugar beet (Beta vulgaris)”. Annals of Botany 102.4 (2008): 521-530.

12 Zitationen in Europe PMC

Daten bereitgestellt von Europe PubMed Central.

Evolutionary dynamics of an at-rich satellite DNA and its contribution to karyotype differentiation in wild diploid Arachis species.
Samoluk SS, Robledo G, Bertioli D, Seijo JG., Mol Genet Genomics 292(2), 2017
PMID: 27838847
Repeat Composition of CenH3-chromatin and H3K9me2-marked heterochromatin in Sugar Beet (Beta vulgaris).
Kowar T, Zakrzewski F, Macas J, Kobližková A, Viehoever P, Weisshaar B, Schmidt T., BMC Plant Biol 16(1), 2016
PMID: 27230558
Evolution of long centromeres in fire ants.
Huang YC, Lee CC, Kao CY, Chang NC, Lin CC, Shoemaker D, Wang J., BMC Evol Biol 16(), 2016
PMID: 27628313
Survey of sugar beet (Beta vulgaris L.) hAT transposons and MITE-like hATpin derivatives.
Menzel G, Krebs C, Diez M, Holtgräwe D, Weisshaar B, Minoche AE, Dohm JC, Himmelbauer H, Schmidt T., Plant Mol Biol 78(4-5), 2012
PMID: 22246381
A sugar beet (Beta vulgaris L.) reference FISH karyotype for chromosome and chromosome-arm identification, integration of genetic linkage groups and analysis of major repeat family distribution.
Paesold S, Borchardt D, Schmidt T, Dechyeva D., Plant J 72(4), 2012
PMID: 22775355
Evolutionary reshuffling in the Errantivirus lineage Elbe within the Beta vulgaris genome.
Wollrab C, Heitkam T, Holtgräwe D, Weisshaar B, Minoche AE, Dohm JC, Himmelbauer H, Schmidt T., Plant J 72(4), 2012
PMID: 22804913
Epigenetic profiling of heterochromatic satellite DNA.
Zakrzewski F, Weisshaar B, Fuchs J, Bannack E, Minoche AE, Dohm JC, Himmelbauer H, Schmidt T., Chromosoma 120(4), 2011
PMID: 21594600
Chromosomal localization of two novel repetitive sequences isolated from the Chenopodium quinoa Willd. genome.
Kolano B, Gardunia BW, Michalska M, Bonifacio A, Fairbanks D, Maughan PJ, Coleman CE, Stevens MR, Jellen EN, Maluszynska J., Genome 54(9), 2011
PMID: 21848446
The Ty1-copia families SALIRE and Cotzilla populating the Beta vulgaris genome show remarkable differences in abundance, chromosomal distribution, and age.
Weber B, Wenke T, Frömmel U, Schmidt T, Heitkam T., Chromosome Res 18(2), 2010
PMID: 20039119
Analysis of a c0t-1 library enables the targeted identification of minisatellite and satellite families in Beta vulgaris.
Zakrzewski F, Wenke T, Holtgräwe D, Weisshaar B, Schmidt T., BMC Plant Biol 10(), 2010
PMID: 20064260
Molecular cytogenetic mapping of chromosomal fragments and immunostaining of kinetochore proteins in Beta.
Dechyeva D, Schmidt T., Int J Plant Genomics 2009(), 2009
PMID: 19911065
An abundant and heavily truncated non-LTR retrotransposon (LINE) family in Beta vulgaris.
Wenke T, Holtgräwe D, Horn AV, Weisshaar B, Schmidt T., Plant Mol Biol 71(6), 2009
PMID: 19697140

67 References

Daten bereitgestellt von Europe PubMed Central.

Nuclear DNA content of some important plant species
Arumuganathan K, Earle ED., 1991
Transposable element contributions to plant gene and genome evolution.
Bennetzen JL., Plant Mol. Biol. 42(1), 2000
PMID: 10688140
Active maize genes are unmodified and flanked by diverse classes of modified, highly repetitive DNA.
Bennetzen JL, Schrick K, Springer PS, Brown WE, SanMiguel P., Genome 37(4), 1994
PMID: 7958822
Multiple repetitive DNA sequences in the paracentromeric regions of Arabidopsis thaliana L.
Brandes A, Thompson H, Dean C, Heslop-Harrison JS., Chromosome Res. 5(4), 1997
PMID: 9244451
Genetic definition and sequence analysis of Arabidopsis centromeres.
Copenhaver GP, Nickel K, Kuromori T, Benito MI, Kaul S, Lin X, Bevan M, Murphy G, Harris B, Parnell LD, McCombie WR, Martienssen RA, Marra M, Preuss D., Science 286(5449), 1999
PMID: 10617454
Molecular organization of terminal repetitive DNA in Beta species.
Dechyeva D, Schmidt T., Chromosome Res. 14(8), 2006
PMID: 17195925
Divergence of satellite DNA and interspersion of dispersed repeats in the genome of the wild beet Beta procumbens.
Dechyeva D, Gindullis F, Schmidt T., Chromosome Res. 11(1), 2003
PMID: 12675302

Desel C., 2002
Rice (Oryza sativa) centromeric regions consist of complex DNA.
Dong F, Miller JT, Jackson SA, Wang GL, Ronald PC, Jiang J., Proc. Natl. Acad. Sci. U.S.A. 95(14), 1998
PMID: 9653153
Molecular drive: a cohesive mode of species evolution
Dover G., 1982
Origin of the ‘Weisse Schlesische Rübe’ (white Silesian beet) and resynthesis of sugar beet
Fischer HE., 1989
Evidence for nucleosomal phasing and a novel protein specifically binding to cucumber satellite DNA
Fischer TC, Groner S, Zentgraf U, Hemleben V., 1994
Genome size and the proportion of repeated nucleotide sequence DNA in plants.
Flavell RB, Bennett MD, Smith JB, Smith DB., Biochem. Genet. 12(4), 1974
PMID: 4441361
Molecular characterization and chromosomal distribution of species-specific repetitive DNA sequences from Beta corolliflora, a wild relative of sugar beet.
Gao D, Schmidt T, Jung C., Genome 43(6), 2000
PMID: 11195340
Construction and characterization of a BAC library for the molecular dissection of a single wild beet centromere and sugar beet (Beta vulgaris) genome analysis.
Gindullis F, Dechyeva D, Schmidt T., Genome 44(5), 2001
PMID: 11681609
The large-scale organization of the centromeric region in Beta species.
Gindullis F, Desel C, Galasso I, Schmidt T., Genome Res. 11(2), 2001
PMID: 11157788
Distribution and complex organization of satellite DNA sequences in Aveneae species.
Grebenstein B, Grebenstein O, Sauer W, Hemleben V., Genome 39(6), 1996
PMID: 8983180
Centromere satellites from Arabidopsis populations: maintenance of conserved and variable domains.
Hall SE, Kettler G, Preuss D., Genome Res. 13(2), 2003
PMID: 12566397
Centromeric repetitive DNA sequences in the genus Brassica
Harrison GE, Heslop-Harrison JS., 1995
Molecular cell biology: role of repetitive DNA in nuclear architecture and chromosome structure
Hemleben V, Schmidt T, Torres-Ruiz RA, Zentgraf U., 2000
Comparative analysis of plant genome architecture.
Heslop-Harrison JS., Symp. Soc. Exp. Biol. 50(), 1996
PMID: 9039430
Comparative genome organization in plants: from sequence and markers to chromatin and chromosomes.
Heslop-Harrison JS., Plant Cell 12(5), 2000
PMID: 10810139
The chromosomal distributions of Ty1-copia group retrotransposable elements in higher plants and their implications for genome evolution.
Heslop-Harrison JS, Brandes A, Taketa S, Schmidt T, Vershinin AV, Alkhimova EG, Kamm A, Doudrick RL, Schwarzacher T, Katsiotis A, Kubis S, Kumar A, Pearce SR, Flavell AJ, Harrison GE., Genetica 100(1-3), 1997
PMID: 9440273
Polymorphisms and genomic organization of repetitive DNA from centromeric regions of Arabidopsis chromosomes.
Heslop-Harrison JS, Murata M, Ogura Y, Schwarzacher T, Motoyoshi F., Plant Cell 11(1), 1999
PMID: 9878630
A bacterial artificial chromosome (BAC) library of sugar beet and a physical map of the region encompassing the bolting gene B.
Hohmann U, Jacobs G, Telgmann A, Gaafar RM, Alam S, Jung C., Mol. Genet. Genomics 269(1), 2003
PMID: 12715161
TAS49--a dispersed repetitive sequence isolated from subtelomeric regions of Nicotiana tomentosiformis chromosomes.
Horakova M, Fajkus J., Genome 43(2), 2000
PMID: 10791815
DNA and proteins of plant centromeres.
Houben A, Schubert I., Curr. Opin. Plant Biol. 6(6), 2003
PMID: 14611953
Sequence organization of barley centromeres.
Hudakova S, Michalek W, Presting GG, ten Hoopen R, dos Santos K, Jasencakova Z, Schubert I., Nucleic Acids Res. 29(24), 2001
PMID: 11812833
A structural and evolutionary analysis of a dispersed repetitive sequence.
Hueros G, Loarce Y, Ferrer E., Plant Mol. Biol. 22(4), 1993
PMID: 8343599
Origin of the main class of repetitive DNA within selected Pennisetum species.
Ingham LD, Hanna WW, Baier JW, Hannah LC., Mol. Gen. Genet. 238(3), 1993
PMID: 8492802
B chromosomes and genome size in flowering plants.
Trivers R, Burt A, Palestis BG., Genome 47(1), 2004
PMID: 15060596
Integration and nonrandom mutation of a plasma membrane proton ATPase gene fragment within the Bs1 retroelement of maize.
Jin YK, Bennetzen JL., Plant Cell 6(8), 1994
PMID: 7919987
A synopsis of Chenopodiaceae subfam. Betoidae and notes on the taxonomy of Beta
Kadereit G, Hohmann S, Kadereit JW., 2006
Analysis of a repetitive DNA family from Arabidopsis arenosa and relationships between Arabidopsis species.
Kamm A, Galasso I, Schmidt T, Heslop-Harrison JS., Plant Mol. Biol. 27(5), 1995
PMID: 7766876
Sequences of Ty1-copia-like retrotransposon elements in genus Avena
Katsiotis A, Schmidt T, Heslop-Harrison JS., 1995
Structure and genomic organization of centromeric repeats in Arabidopsis species.
Kawabe A, Nasuda S., Mol. Genet. Genomics 272(6), 2004
PMID: 15586291
Complex arrangement of dispersed repeated DNA sequences in Oryza officinalis.
Kiefer-Meyer MC, Reddy AS, Delseny M., Genome 39(1), 1996
PMID: 8851805
A family of differentially amplified repetitive DNA sequences in the genus Beta reveals genetic variation in Beta vulgaris subspecies and cultivars.
Kubis S, Heslop-Harrison JS, Schmidt T., J. Mol. Evol. 44(3), 1997
PMID: 9060397
Repetitive DNA elements as a major component of plant genomes
Kubis S, Heslop-Harrison JS, Schmidt T., 1998
Sequence analysis, chromosomal distribution and long-range organization show that rapid turnover of new and old pBuM satellite DNA repeats leads to different patterns of variation in seven species of the Drosophila buzzatii cluster.
Kuhn GC, Sene FM, Moreira-Filho O, Schwarzacher T, Heslop-Harrison JS., Chromosome Res. 16(2), 2008
PMID: 18266060
Plant retrotransposons.
Kumar A, Bennetzen JL., Annu. Rev. Genet. 33(), 1999
PMID: 10690416
Cloning and characterization of a highly repeated DNA sequence in Hordeum vulgare L.
Liu K, Somerville S., Genome 39(6), 1996
PMID: 8983185
Construction of a sugar beet BAC library from a hybrid with diverse traits
McGrath JM, Shaw RS, de BG, Weiland JJ., 2004
Plant centromere organization: a dynamic structure with conserved functions.
Ma J, Wing RA, Bennetzen JL, Jackson SA., Trends Genet. 23(3), 2007
PMID: 17275131
PlantSat: a specialized database for plant satellite repeats.
Macas J, Meszaros T, Nouzova M., Bioinformatics 18(1), 2002
PMID: 11836208
Mobilization and evolutionary history of miniature inverted-repeat transposable elements (MITEs) in Beta vulgaris L.
Menzel G, Dechyeva D, Keller H, Lange C, Himmelbauer H, Schmidt T., Chromosome Res. 14(8), 2006
PMID: 17171577
A novel repetitive sequence of sugar cane, SCEN family, locating on centromeric regions.
Nagaki K, Tsujimoto H, Sasakuma T., Chromosome Res. 6(4), 1998
PMID: 9688519
Microarray-based survey of repetitive genomic sequences in Vicia spp.
Nouzova M, Neumann P, Navratilova A, Galbraith DW, Macas J., Plant Mol. Biol. 45(2), 2001
PMID: 11289513
Quantification of total genomic DNA and selected repetitive sequences reveals concurrent changes in different DNA families in indica and japonica rice.
Ohmido N, Kijima K, Akiyama Y, de Jong JH, Fukui K., Mol. Gen. Genet. 263(3), 2000
PMID: 10821172
Higher-order repeats in the satellite DNA of the cave beetle Pholeuon proserpinae glaciale (Coleoptera: Cholevidae).
Pons J, Bucur R, Vogler AP., Hereditas 139(1), 2003
PMID: 14641470
A Ty3/gypsy retrotransposon-like sequence localizes to the centromeric regions of cereal chromosomes.
Presting GG, Malysheva L, Fuchs J, Schubert I., Plant J. 16(6), 1998
PMID: 10069078
Analysis of the centromeric regions of the human genome assembly.
Rudd MK, Willard HF., Trends Genet. 20(11), 2004
PMID: 15475110
Ribosomal DNA spacer-length polymorphisms in barley: mendelian inheritance, chromosomal location, and population dynamics.
Saghai-Maroof MA, Soliman KM, Jorgensen RA, Allard RW., Proc. Natl. Acad. Sci. U.S.A. 81(24), 1984
PMID: 6096873

Sambrook J, Fritsch EF, Maniatis T., 1989
Nested retrotransposons in the intergenic regions of the maize genome.
SanMiguel P, Tikhonov A, Jin YK, Motchoulskaia N, Zakharov D, Melake-Berhan A, Springer PS, Edwards KJ, Lee M, Avramova Z, Bennetzen JL., Science 274(5288), 1996
PMID: 8864112
Variability and evolution of highly repeated DNA sequences in the genus Beta.
Schmidt T, Heslop-Harrison JS., Genome 36(6), 1993
PMID: 8112571
High-resolution mapping of repetitive DNA by in situ hybridization: molecular and chromosomal features of prominent dispersed and discretely localized DNA families from the wild beet species Beta procumbens.
Schmidt T, Heslop-Harrison JS., Plant Mol. Biol. 30(6), 1996
PMID: 8704122
Genomes, genes and junk: the large-scale organization of plant chromosomes
Schmidt T, Heslop-Harrison JS., 1998
Cloning and characterization of a Beta vulgaris satellite DNA family.
Schmidt T, Metzlaff M., Gene 101(2), 1991
PMID: 2055488
Distribution and evolution of two satellite DNAs in the genus Beta
Schmidt T, Jung C, Metzlaff M., 1991
Physical mapping of rRNA genes by fluorescent in situ hybridization and structural analysis of 5S rRNA genes and intergenic spacer sequences in sugar beet (Beta vulgaris)
Schmidt T, Schwarzacher T, Heslop-Harrison JS., 1994
Analysis and chromosomal localization of retrotransposons in sugar beet (Beta vulgaris L.): LINEs and Ty1-copia-like elements as major components of the genome.
Schmidt T, Kubis S, Heslop-Harrison JS., Chromosome Res. 3(6), 1995
PMID: 7551548
Molecular and chromosomal organization of two repetitive DNA sequences with intercalary locations in sugar beet and other Beta species
Schmidt T, Kubis S, Katsiotis A, Jung C, Heslop-Harrison J., 1998

Schwarzacher T, Heslop-Harrison JS., 2000
Characterization of highly repetitive sequences of Arabidopsis thaliana.
Simoens CR, Gielen J, Van Montagu M, Inze D., Nucleic Acids Res. 16(14B), 1988
PMID: 3405748
Evolution of repeated DNA sequences by unequal crossover.
Smith GP., Science 191(4227), 1976
PMID: 1251186
Comparative analysis of the nucleosomal structure of rye, wheat and their relatives.
Vershinin AV, Heslop-Harrison JS., Plant Mol. Biol. 36(1), 1998
PMID: 9484470
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