An abundant and heavily truncated non-LTR retrotransposon (LINE) family in Beta vulgaris

Wenke T, Holtgräwe D, Horn AV, Weisshaar B, Schmidt T (2009)
Plant Molecular Biology 71(6): 585-597.

Zeitschriftenaufsatz | Veröffentlicht | Englisch
 
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DOI
Autor*in
Wenke, Torsten; Holtgräwe, DanielaUniBi ; Horn, Axel V.; Weisshaar, BerndUniBi ; Schmidt, Thomas
Einrichtung
Fakultät für Biologie > Genetik und Genomik der Pflanzen
Centrum für Biotechnologie > Arbeitsgruppe B. Weisshaar
Centrum für Biotechnologie > Institut für Genomforschung und Systembiologie
Abstract / Bemerkung
We describe a non-LTR retrotransposon family,BvL, of the long interspersed nuclear elements L1 clade isolated from sugar beet (Beta vulgaris). Characteristic molecular domains of three full-length BvL elements were determined in detail, showing that coding sequences are interrupted and most likely non-functionally. In addition,eight highly conserved endonuclease regions were defined by comparison with other plant LINEs. The abundant BvL family is widespread within the genus Beta, however, the vast majority of BvL copies are extremely 50 truncated indicating an error-prone reverse transcriptase activity. The dispersed distribution of BvL copies on all sugar beet chromosomes with exclusion of most heterochromatic regions was shown by fluorescent in situ hybridization. The analysis of BvL 30 end sequences and corresponding flanking regions, respectively, revealed the preferred integration of BvL into A/T-rich regions of the sugar beet genome, but no specific target sequences.
Stichworte
Fluorescent in situ hybridization; Long interspersed nuclear elements; retrotransposon; Sugar beet; Non-LTR; Beta vulgaris
Erscheinungsjahr
2009
Zeitschriftentitel
Plant Molecular Biology
Band
71
Ausgabe
6
Seite(n)
585-597
ISSN
0167-4412
eISSN
1573-5028
Page URI
https://pub.uni-bielefeld.de/record/1589556

Zitieren

Wenke T, Holtgräwe D, Horn AV, Weisshaar B, Schmidt T. An abundant and heavily truncated non-LTR retrotransposon (LINE) family in Beta vulgaris. Plant Molecular Biology. 2009;71(6):585-597.
Wenke, T., Holtgräwe, D., Horn, A. V., Weisshaar, B., & Schmidt, T. (2009). An abundant and heavily truncated non-LTR retrotransposon (LINE) family in Beta vulgaris. Plant Molecular Biology, 71(6), 585-597. https://doi.org/10.1007/s11103-009-9542-6
Wenke, Torsten, Holtgräwe, Daniela, Horn, Axel V., Weisshaar, Bernd, and Schmidt, Thomas. 2009. “An abundant and heavily truncated non-LTR retrotransposon (LINE) family in Beta vulgaris”. Plant Molecular Biology 71 (6): 585-597.
Wenke, T., Holtgräwe, D., Horn, A. V., Weisshaar, B., and Schmidt, T. (2009). An abundant and heavily truncated non-LTR retrotransposon (LINE) family in Beta vulgaris. Plant Molecular Biology 71, 585-597.
Wenke, T., et al., 2009. An abundant and heavily truncated non-LTR retrotransposon (LINE) family in Beta vulgaris. Plant Molecular Biology, 71(6), p 585-597.
T. Wenke, et al., “An abundant and heavily truncated non-LTR retrotransposon (LINE) family in Beta vulgaris”, Plant Molecular Biology, vol. 71, 2009, pp. 585-597.
Wenke, T., Holtgräwe, D., Horn, A.V., Weisshaar, B., Schmidt, T.: An abundant and heavily truncated non-LTR retrotransposon (LINE) family in Beta vulgaris. Plant Molecular Biology. 71, 585-597 (2009).
Wenke, Torsten, Holtgräwe, Daniela, Horn, Axel V., Weisshaar, Bernd, and Schmidt, Thomas. “An abundant and heavily truncated non-LTR retrotransposon (LINE) family in Beta vulgaris”. Plant Molecular Biology 71.6 (2009): 585-597.

13 Zitationen in Europe PMC

Daten bereitgestellt von Europe PubMed Central.

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Staginnus C, Desel C, Schmidt T, Kahl G., Genome 53(12), 2010
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