Construction and characterization of a sugar beet (Beta vulgaris) fosmid library

Lange C, Holtgräwe D, Schulz B, Weisshaar B, Himmelbauer H (2008)
Genome 51(11): 948-951.

Zeitschriftenaufsatz | Veröffentlicht | Englisch
 
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DOI
Autor*in
Lange, Cornelia; Holtgräwe, DanielaUniBi ; Schulz, Britta; Weisshaar, BerndUniBi ; Himmelbauer, Heinz
Einrichtung
Fakultät für Biologie > Genetik und Genomik der Pflanzen
Centrum für Biotechnologie > Institut für Genomforschung und Systembiologie
Centrum für Biotechnologie > Arbeitsgruppe B. Weisshaar
Stichworte
fosmid; genome sequence; physical mapping; sugar beet
Erscheinungsjahr
2008
Zeitschriftentitel
Genome
Band
51
Ausgabe
11
Seite(n)
948-951
ISSN
0831-2796
eISSN
1480-3321
Page URI
https://pub.uni-bielefeld.de/record/1635969

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Lange C, Holtgräwe D, Schulz B, Weisshaar B, Himmelbauer H. Construction and characterization of a sugar beet (Beta vulgaris) fosmid library. Genome. 2008;51(11):948-951.
Lange, C., Holtgräwe, D., Schulz, B., Weisshaar, B., & Himmelbauer, H. (2008). Construction and characterization of a sugar beet (Beta vulgaris) fosmid library. Genome, 51(11), 948-951. https://doi.org/10.1139/G08-071
Lange, Cornelia, Holtgräwe, Daniela, Schulz, Britta, Weisshaar, Bernd, and Himmelbauer, Heinz. 2008. “Construction and characterization of a sugar beet (Beta vulgaris) fosmid library”. Genome 51 (11): 948-951.
Lange, C., Holtgräwe, D., Schulz, B., Weisshaar, B., and Himmelbauer, H. (2008). Construction and characterization of a sugar beet (Beta vulgaris) fosmid library. Genome 51, 948-951.
Lange, C., et al., 2008. Construction and characterization of a sugar beet (Beta vulgaris) fosmid library. Genome, 51(11), p 948-951.
C. Lange, et al., “Construction and characterization of a sugar beet (Beta vulgaris) fosmid library”, Genome, vol. 51, 2008, pp. 948-951.
Lange, C., Holtgräwe, D., Schulz, B., Weisshaar, B., Himmelbauer, H.: Construction and characterization of a sugar beet (Beta vulgaris) fosmid library. Genome. 51, 948-951 (2008).
Lange, Cornelia, Holtgräwe, Daniela, Schulz, Britta, Weisshaar, Bernd, and Himmelbauer, Heinz. “Construction and characterization of a sugar beet (Beta vulgaris) fosmid library”. Genome 51.11 (2008): 948-951.

12 Zitationen in Europe PMC

Daten bereitgestellt von Europe PubMed Central.

Crop wild relative populations of Beta vulgaris allow direct mapping of agronomically important genes.
Capistrano-Gossmann GG, Ries D, Holtgräwe D, Minoche A, Kraft T, Frerichmann SLM, Rosleff Soerensen T, Dohm JC, González I, Schilhabel M, Varrelmann M, Tschoep H, Uphoff H, Schütze K, Borchardt D, Toerjek O, Mechelke W, Lein JC, Schechert AW, Frese L, Himmelbauer H, Weisshaar B, Kopisch-Obuch FJ., Nat Commun 8(), 2017
PMID: 28585529
SMRT sequencing only de novo assembly of the sugar beet (Beta vulgaris) chloroplast genome.
Stadermann KB, Weisshaar B, Holtgräwe D., BMC Bioinformatics 16(), 2015
PMID: 26377912
The genome of the recently domesticated crop plant sugar beet (Beta vulgaris).
Dohm JC, Minoche AE, Holtgräwe D, Capella-Gutiérrez S, Zakrzewski F, Tafer H, Rupp O, Sörensen TR, Stracke R, Reinhardt R, Goesmann A, Kraft T, Schulz B, Stadler PF, Schmidt T, Gabaldón T, Lehrach H, Weisshaar B, Himmelbauer H., Nature 505(7484), 2014
PMID: 24352233
Insights into the loblolly pine genome: characterization of BAC and fosmid sequences.
Wegrzyn JL, Lin BY, Zieve JJ, Dougherty WM, Martínez-García PJ, Koriabine M, Holtz-Morris A, deJong P, Crepeau M, Langley CH, Puiu D, Salzberg SL, Neale DB, Stevens KA., PLoS One 8(9), 2013
PMID: 24023741
Survey of sugar beet (Beta vulgaris L.) hAT transposons and MITE-like hATpin derivatives.
Menzel G, Krebs C, Diez M, Holtgräwe D, Weisshaar B, Minoche AE, Dohm JC, Himmelbauer H, Schmidt T., Plant Mol Biol 78(4-5), 2012
PMID: 22246381
Palaeohexaploid ancestry for Caryophyllales inferred from extensive gene-based physical and genetic mapping of the sugar beet genome (Beta vulgaris).
Dohm JC, Lange C, Holtgräwe D, Sörensen TR, Borchardt D, Schulz B, Lehrach H, Weisshaar B, Himmelbauer H., Plant J 70(3), 2012
PMID: 22211633
Advances in BAC-based physical mapping and map integration strategies in plants.
Ariyadasa R, Stein N., J Biomed Biotechnol 2012(), 2012
PMID: 22500080
The first insight into the Taxus genome via fosmid library construction and end sequencing.
Hao D, Yang L, Xiao P., Mol Genet Genomics 285(3), 2011
PMID: 21207064
Epigenetic profiling of heterochromatic satellite DNA.
Zakrzewski F, Weisshaar B, Fuchs J, Bannack E, Minoche AE, Dohm JC, Himmelbauer H, Schmidt T., Chromosoma 120(4), 2011
PMID: 21594600
Genome-wide distribution of genetic diversity and linkage disequilibrium in elite sugar beet germplasm.
Li J, Lühmann AK, Weissleder K, Stich B., BMC Genomics 12(), 2011
PMID: 21970685
The Ty1-copia families SALIRE and Cotzilla populating the Beta vulgaris genome show remarkable differences in abundance, chromosomal distribution, and age.
Weber B, Wenke T, Frömmel U, Schmidt T, Heitkam T., Chromosome Res 18(2), 2010
PMID: 20039119
High-throughput identification of genetic markers using representational oligonucleotide microarray analysis.
Lange C, Mittermayr L, Dohm JC, Holtgräwe D, Weisshaar B, Himmelbauer H., Theor Appl Genet 121(3), 2010
PMID: 20379697

19 References

Daten bereitgestellt von Europe PubMed Central.

Random sheared fosmid library as a new genomic tool to accelerate complete finishing of rice (Oryza sativa spp. Nipponbare) genome sequence: sequencing of gap-specific fosmid clones uncovers new euchromatic portions of the genome.
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PMID: 16200416

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PMID: 388356
Closing gaps in the human genome with fosmid resources generated from multiple individuals.
Bovee D, Zhou Y, Haugen E, Wu Z, Hayden HS, Gillett W, Tuzun E, Cooper GM, Sampas N, Phelps K, Levy R, Morrison VA, Sprague J, Jewett D, Buckley D, Subramaniam S, Chang J, Smith DR, Olson MV, Eichler EE, Kaul R., Nat. Genet. 40(1), 2007
PMID: 18157130
Construction and characterization of a BAC library for the molecular dissection of a single wild beet centromere and sugar beet (Beta vulgaris) genome analysis.
Gindullis F, Dechyeva D, Schmidt T., Genome 44(5), 2001
PMID: 11681609
Sugar beet BAC library construction and assembly of a contig spanning Rf1, a restorer-of-fertility gene for Owen cytoplasmic male sterility.
Hagihara E, Matsuhira H, Ueda M, Mikami T, Kubo T., Mol. Genet. Genomics 274(3), 2005
PMID: 16080000
Construction of a 'unigene' cDNA clone set by oligonucleotide fingerprinting allows access to 25 000 potential sugar beet genes.
Herwig R, Schulz B, Weisshaar B, Hennig S, Steinfath M, Drungowski M, Stahl D, Wruck W, Menze A, O'Brien J, Lehrach H, Radelof U., Plant J. 32(5), 2002
PMID: 12472698

AUTHOR UNKNOWN, 0
A BAC library of Beta vulgaris L. for the targeted isolation of centromeric DNA and molecular cytogenetics of Beta species.
Jacobs G, Dechyeva D, Wenke T, Weber B, Schmidt T., Genetica 135(2), 2008
PMID: 18386131
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Kim UJ, Shizuya H, de Jong PJ, Birren B, Simon MI., Nucleic Acids Res. 20(5), 1992
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The complete nucleotide sequence of the mitochondrial genome of sugar beet (Beta vulgaris L.) reveals a novel gene for tRNA(Cys)(GCA).
Kubo T, Nishizawa S, Sugawara A, Itchoda N, Estiati A, Mikami T., Nucleic Acids Res. 28(13), 2000
PMID: 10871408

AUTHOR UNKNOWN, 0
Using partial genomic fosmid libraries for sequencing complete organellar genomes.
McNeal JR, Leebens-Mack JH, Arumuganathan K, Kuehl JV, Boore JL, DePamphilis CW., BioTechniques 41(1), 2006
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Newman TL, Tuzun E, Morrison VA, Hayden KE, Ventura M, McGrath SD, Rocchi M, Eichler EE., Genome Res. 15(10), 2005
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PCR-based cloning and segregation analysis of functional gene homologues in Beta vulgaris.
Schneider K, Borchardt DC, Schafer-Pregl R, Nagl N, Glass C, Jeppsson A, Gebhardt C, Salamini F., Mol. Gen. Genet. 262(3), 1999
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Schneider K, Kulosa D, Soerensen TR, Mohring S, Heine M, Durstewitz G, Polley A, Weber E, Jamsari , Lein J, Hohmann U, Tahiro E, Weisshaar B, Schulz B, Koch G, Jung C, Ganal M., Theor. Appl. Genet. 115(5), 2007
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A complete physical map of a wild beet (Beta procumbens) translocation in sugar beet.
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