Palaeohexaploid Ancestry for Caryophyllales Inferred from Extensive Gene-Based Physical and Genetic Mapping of the Sugar Beet Genome (Beta vulgaris)
Dohm JC, Lange C, Holtgräwe D, Rosleff Sörensen T, Borchardt D, Schulz B, Lehrach H, Weisshaar B, Himmelbauer H (2012)
The Plant Journal 70(3): 528-540.
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Autor*in
Dohm, Juliane C.;
Lange, Cornelia;
Holtgräwe, DanielaUniBi 
;
Rosleff Sörensen, ThomasUniBi;
Borchardt, Dietrich;
Schulz, Britta;
Lehrach, Hans;
Weisshaar, BerndUniBi ;
Himmelbauer, Heinz
;
Rosleff Sörensen, ThomasUniBi;
Borchardt, Dietrich;
Schulz, Britta;
Lehrach, Hans;
Weisshaar, BerndUniBi ;
Himmelbauer, HeinzEinrichtung
Abstract / Bemerkung
Sugar beet (Beta vulgaris) is an important crop plant accounting for 30% of the world's sugar production annually. The genus Beta is a distant relative of currently sequenced taxa within the core eudicotyledons, and genomic characterization of sugar beet is essential in order to make its genome accessible to molecular dissection. Here, we present comprehensive genomic information in genetic and physical maps covering all nine chromosomes. Based on this information we identified the proposed ancestral linkage groups of rosids and asterids within the sugar beet genome. We generated an extended genetic map comprising 1127 single nucleotide polymorphism markers prepared from expressed sequence tags and bacterial artificial chromosome (BAC) end sequences. To construct a genome-wide physical map we hybridized gene-derived oligomer probes against two BAC libraries with 9.5 fold cumulative coverage of the 758 Mbp genome. More than 2500 probes and clones were integrated both in genetic maps and the physical data. The final physical map encompasses 535 chromosomally anchored contigs containing 8361 probes and 22,815 BAC clones. By using the gene order established with the physical map we detected regions of synteny between sugar beet (order Caryophyllales) and rosid species involving 1400-2700 genes in the sequenced genomes of Arabidopsis, poplar, grapevine, and cacao. The data suggest that Caryophyllales share the palaeohexaploid ancestor proposed for rosids and asterids. Taken together, we here provide extensive molecular resources for sugar beet enabling future high-resolution trait mapping, gene identification, and cross-referencing to regions sequenced in other plant species. © 2011 The Authors. The Plant Journal© 2011 Blackwell Publishing Ltd.
Erscheinungsjahr
2012
Zeitschriftentitel
The Plant Journal
Band
70
Ausgabe
3
Seite(n)
528-540
ISSN
0960-7412
Page URI
https://pub.uni-bielefeld.de/record/2454417
Zitieren
Dohm JC, Lange C, Holtgräwe D, et al. Palaeohexaploid Ancestry for Caryophyllales Inferred from Extensive Gene-Based Physical and Genetic Mapping of the Sugar Beet Genome (Beta vulgaris). The Plant Journal. 2012;70(3):528-540.
Dohm, J. C., Lange, C., Holtgräwe, D., Rosleff Sörensen, T., Borchardt, D., Schulz, B., Lehrach, H., et al. (2012). Palaeohexaploid Ancestry for Caryophyllales Inferred from Extensive Gene-Based Physical and Genetic Mapping of the Sugar Beet Genome (Beta vulgaris). The Plant Journal, 70(3), 528-540. doi:10.1111/j.1365-313X.2011.04898.x
Dohm, Juliane C., Lange, Cornelia, Holtgräwe, Daniela, Rosleff Sörensen, Thomas, Borchardt, Dietrich, Schulz, Britta, Lehrach, Hans, Weisshaar, Bernd, and Himmelbauer, Heinz. 2012. “Palaeohexaploid Ancestry for Caryophyllales Inferred from Extensive Gene-Based Physical and Genetic Mapping of the Sugar Beet Genome (Beta vulgaris)”. The Plant Journal 70 (3): 528-540.
Dohm, J. C., Lange, C., Holtgräwe, D., Rosleff Sörensen, T., Borchardt, D., Schulz, B., Lehrach, H., Weisshaar, B., and Himmelbauer, H. (2012). Palaeohexaploid Ancestry for Caryophyllales Inferred from Extensive Gene-Based Physical and Genetic Mapping of the Sugar Beet Genome (Beta vulgaris). The Plant Journal 70, 528-540.
Dohm, J.C., et al., 2012. Palaeohexaploid Ancestry for Caryophyllales Inferred from Extensive Gene-Based Physical and Genetic Mapping of the Sugar Beet Genome (Beta vulgaris). The Plant Journal, 70(3), p 528-540.
J.C. Dohm, et al., “Palaeohexaploid Ancestry for Caryophyllales Inferred from Extensive Gene-Based Physical and Genetic Mapping of the Sugar Beet Genome (Beta vulgaris)”, The Plant Journal, vol. 70, 2012, pp. 528-540.
Dohm, J.C., Lange, C., Holtgräwe, D., Rosleff Sörensen, T., Borchardt, D., Schulz, B., Lehrach, H., Weisshaar, B., Himmelbauer, H.: Palaeohexaploid Ancestry for Caryophyllales Inferred from Extensive Gene-Based Physical and Genetic Mapping of the Sugar Beet Genome (Beta vulgaris). The Plant Journal. 70, 528-540 (2012).
Dohm, Juliane C., Lange, Cornelia, Holtgräwe, Daniela, Rosleff Sörensen, Thomas, Borchardt, Dietrich, Schulz, Britta, Lehrach, Hans, Weisshaar, Bernd, and Himmelbauer, Heinz. “Palaeohexaploid Ancestry for Caryophyllales Inferred from Extensive Gene-Based Physical and Genetic Mapping of the Sugar Beet Genome (Beta vulgaris)”. The Plant Journal 70.3 (2012): 528-540.
Daten bereitgestellt von European Bioinformatics Institute (EBI)
22 Zitationen in Europe PMC
Daten bereitgestellt von Europe PubMed Central.
Disparity, diversity, and duplications in the Caryophyllales.
Smith SA, Brown JW, Yang Y, Bruenn R, Drummond CP, Brockington SF, Walker JF, Last N, Douglas NA, Moore MJ., New Phytol 217(2), 2018
PMID: 28892163
Smith SA, Brown JW, Yang Y, Bruenn R, Drummond CP, Brockington SF, Walker JF, Last N, Douglas NA, Moore MJ., New Phytol 217(2), 2018
PMID: 28892163
Improved transcriptome sampling pinpoints 26 ancient and more recent polyploidy events in Caryophyllales, including two allopolyploidy events.
Yang Y, Moore MJ, Brockington SF, Mikenas J, Olivieri J, Walker JF, Smith SA., New Phytol 217(2), 2018
PMID: 28944472
Yang Y, Moore MJ, Brockington SF, Mikenas J, Olivieri J, Walker JF, Smith SA., New Phytol 217(2), 2018
PMID: 28944472
Meta-analysis of chromosome-scale crossover rate variation in eukaryotes and its significance to evolutionary genomics.
Haenel Q, Laurentino TG, Roesti M, Berner D., Mol Ecol 27(11), 2018
PMID: 29676042
Haenel Q, Laurentino TG, Roesti M, Berner D., Mol Ecol 27(11), 2018
PMID: 29676042
Predicting genotype environmental range from genome-environment associations.
Manel S, Andrello M, Henry K, Verdelet D, Darracq A, Guerin PE, Desprez B, Devaux P., Mol Ecol 27(13), 2018
PMID: 29772088
Manel S, Andrello M, Henry K, Verdelet D, Darracq A, Guerin PE, Desprez B, Devaux P., Mol Ecol 27(13), 2018
PMID: 29772088
Functional characterisation and cell specificity of BvSUT1, the transporter that loads sucrose into the phloem of sugar beet (Beta vulgaris L.) source leaves.
Nieberl P, Ehrl C, Pommerrenig B, Graus D, Marten I, Jung B, Ludewig F, Koch W, Harms K, Flügge UI, Neuhaus HE, Hedrich R, Sauer N., Plant Biol (Stuttg) 19(3), 2017
PMID: 28075052
Nieberl P, Ehrl C, Pommerrenig B, Graus D, Marten I, Jung B, Ludewig F, Koch W, Harms K, Flügge UI, Neuhaus HE, Hedrich R, Sauer N., Plant Biol (Stuttg) 19(3), 2017
PMID: 28075052
Single-molecule sequencing and Hi-C-based proximity-guided assembly of amaranth (Amaranthus hypochondriacus) chromosomes provide insights into genome evolution.
Lightfoot DJ, Jarvis DE, Ramaraj T, Lee R, Jellen EN, Maughan PJ., BMC Biol 15(1), 2017
PMID: 28854926
Lightfoot DJ, Jarvis DE, Ramaraj T, Lee R, Jellen EN, Maughan PJ., BMC Biol 15(1), 2017
PMID: 28854926
A high-quality genome assembly of quinoa provides insights into the molecular basis of salt bladder-based salinity tolerance and the exceptional nutritional value.
Zou C, Chen A, Xiao L, Muller HM, Ache P, Haberer G, Zhang M, Jia W, Deng P, Huang R, Lang D, Li F, Zhan D, Wu X, Zhang H, Bohm J, Liu R, Shabala S, Hedrich R, Zhu JK, Zhang H., Cell Res 27(11), 2017
PMID: 28994416
Zou C, Chen A, Xiao L, Muller HM, Ache P, Haberer G, Zhang M, Jia W, Deng P, Huang R, Lang D, Li F, Zhan D, Wu X, Zhang H, Bohm J, Liu R, Shabala S, Hedrich R, Zhu JK, Zhang H., Cell Res 27(11), 2017
PMID: 28994416
A major QTL corresponding to the Rk locus for resistance to root-knot nematodes in cowpea (Vigna unguiculata L. Walp.).
Huynh BL, Matthews WC, Ehlers JD, Lucas MR, Santos JR, Ndeve A, Close TJ, Roberts PA., Theor Appl Genet 129(1), 2016
PMID: 26450274
Huynh BL, Matthews WC, Ehlers JD, Lucas MR, Santos JR, Ndeve A, Close TJ, Roberts PA., Theor Appl Genet 129(1), 2016
PMID: 26450274
Comparison of Spinach Sex Chromosomes with Sugar Beet Autosomes Reveals Extensive Synteny and Low Recombination at the Male-Determining Locus.
Takahata S, Yago T, Iwabuchi K, Hirakawa H, Suzuki Y, Onodera Y., J Hered 107(7), 2016
PMID: 27563071
Takahata S, Yago T, Iwabuchi K, Hirakawa H, Suzuki Y, Onodera Y., J Hered 107(7), 2016
PMID: 27563071
Dissecting Molecular Evolution in the Highly Diverse Plant Clade Caryophyllales Using Transcriptome Sequencing.
Yang Y, Moore MJ, Brockington SF, Soltis DE, Wong GK, Carpenter EJ, Zhang Y, Chen L, Yan Z, Xie Y, Sage RF, Covshoff S, Hibberd JM, Nelson MN, Smith SA., Mol Biol Evol 32(8), 2015
PMID: 25837578
Yang Y, Moore MJ, Brockington SF, Soltis DE, Wong GK, Carpenter EJ, Zhang Y, Chen L, Yan Z, Xie Y, Sage RF, Covshoff S, Hibberd JM, Nelson MN, Smith SA., Mol Biol Evol 32(8), 2015
PMID: 25837578
Lineage-specific gene radiations underlie the evolution of novel betalain pigmentation in Caryophyllales.
Brockington SF, Yang Y, Gandia-Herrero F, Covshoff S, Hibberd JM, Sage RF, Wong GK, Moore MJ, Smith SA., New Phytol 207(4), 2015
PMID: 25966996
Brockington SF, Yang Y, Gandia-Herrero F, Covshoff S, Hibberd JM, Sage RF, Wong GK, Moore MJ, Smith SA., New Phytol 207(4), 2015
PMID: 25966996
Exploiting single-molecule transcript sequencing for eukaryotic gene prediction.
Minoche AE, Dohm JC, Schneider J, Holtgräwe D, Viehöver P, Montfort M, Sörensen TR, Weisshaar B, Himmelbauer H., Genome Biol 16(), 2015
PMID: 26328666
Minoche AE, Dohm JC, Schneider J, Holtgräwe D, Viehöver P, Montfort M, Sörensen TR, Weisshaar B, Himmelbauer H., Genome Biol 16(), 2015
PMID: 26328666
SBMDb: first whole genome putative microsatellite DNA marker database of sugarbeet for bioenergy and industrial applications.
Iquebal MA, Jaiswal S, Angadi UB, Sablok G, Arora V, Kumar S, Rai A, Kumar D., Database (Oxford) 2015(), 2015
PMID: 26647370
Iquebal MA, Jaiswal S, Angadi UB, Sablok G, Arora V, Kumar S, Rai A, Kumar D., Database (Oxford) 2015(), 2015
PMID: 26647370
A sequence-ready physical map of barley anchored genetically by two million single-nucleotide polymorphisms.
Ariyadasa R, Mascher M, Nussbaumer T, Schulte D, Frenkel Z, Poursarebani N, Zhou R, Steuernagel B, Gundlach H, Taudien S, Felder M, Platzer M, Himmelbach A, Schmutzer T, Hedley PE, Muehlbauer GJ, Scholz U, Korol A, Mayer KF, Waugh R, Langridge P, Graner A, Stein N., Plant Physiol 164(1), 2014
PMID: 24243933
Ariyadasa R, Mascher M, Nussbaumer T, Schulte D, Frenkel Z, Poursarebani N, Zhou R, Steuernagel B, Gundlach H, Taudien S, Felder M, Platzer M, Himmelbach A, Schmutzer T, Hedley PE, Muehlbauer GJ, Scholz U, Korol A, Mayer KF, Waugh R, Langridge P, Graner A, Stein N., Plant Physiol 164(1), 2014
PMID: 24243933
The genome of the recently domesticated crop plant sugar beet (Beta vulgaris).
Dohm JC, Minoche AE, Holtgräwe D, Capella-Gutiérrez S, Zakrzewski F, Tafer H, Rupp O, Sörensen TR, Stracke R, Reinhardt R, Goesmann A, Kraft T, Schulz B, Stadler PF, Schmidt T, Gabaldón T, Lehrach H, Weisshaar B, Himmelbauer H., Nature 505(7484), 2014
PMID: 24352233
Dohm JC, Minoche AE, Holtgräwe D, Capella-Gutiérrez S, Zakrzewski F, Tafer H, Rupp O, Sörensen TR, Stracke R, Reinhardt R, Goesmann A, Kraft T, Schulz B, Stadler PF, Schmidt T, Gabaldón T, Lehrach H, Weisshaar B, Himmelbauer H., Nature 505(7484), 2014
PMID: 24352233
The B2 flowering time locus of beet encodes a zinc finger transcription factor.
Dally N, Xiao K, Holtgräwe D, Jung C., Proc Natl Acad Sci U S A 111(28), 2014
PMID: 24965366
Dally N, Xiao K, Holtgräwe D, Jung C., Proc Natl Acad Sci U S A 111(28), 2014
PMID: 24965366
Genome-wide identification and characterisation of R2R3-MYB genes in sugar beet (Beta vulgaris).
Stracke R, Holtgräwe D, Schneider J, Pucker B, Sörensen TR, Weisshaar B., BMC Plant Biol 14(), 2014
PMID: 25249410
Stracke R, Holtgräwe D, Schneider J, Pucker B, Sörensen TR, Weisshaar B., BMC Plant Biol 14(), 2014
PMID: 25249410
Reliable in silico identification of sequence polymorphisms and their application for extending the genetic map of sugar beet (Beta vulgaris).
Holtgräwe D, Sörensen TR, Viehöver P, Schneider J, Schulz B, Borchardt D, Kraft T, Himmelbauer H, Weisshaar B., PLoS One 9(10), 2014
PMID: 25302600
Holtgräwe D, Sörensen TR, Viehöver P, Schneider J, Schulz B, Borchardt D, Kraft T, Himmelbauer H, Weisshaar B., PLoS One 9(10), 2014
PMID: 25302600
The role of a pseudo-response regulator gene in life cycle adaptation and domestication of beet.
Pin PA, Zhang W, Vogt SH, Dally N, Büttner B, Schulze-Buxloh G, Jelly NS, Chia TY, Mutasa-Göttgens ES, Dohm JC, Himmelbauer H, Weisshaar B, Kraus J, Gielen JJ, Lommel M, Weyens G, Wahl B, Schechert A, Nilsson O, Jung C, Kraft T, Müller AE., Curr Biol 22(12), 2012
PMID: 22608508
Pin PA, Zhang W, Vogt SH, Dally N, Büttner B, Schulze-Buxloh G, Jelly NS, Chia TY, Mutasa-Göttgens ES, Dohm JC, Himmelbauer H, Weisshaar B, Kraus J, Gielen JJ, Lommel M, Weyens G, Wahl B, Schechert A, Nilsson O, Jung C, Kraft T, Müller AE., Curr Biol 22(12), 2012
PMID: 22608508
A sugar beet (Beta vulgaris L.) reference FISH karyotype for chromosome and chromosome-arm identification, integration of genetic linkage groups and analysis of major repeat family distribution.
Paesold S, Borchardt D, Schmidt T, Dechyeva D., Plant J 72(4), 2012
PMID: 22775355
Paesold S, Borchardt D, Schmidt T, Dechyeva D., Plant J 72(4), 2012
PMID: 22775355
Unusual and typical features of a novel restorer-of-fertility gene of sugar beet (Beta vulgaris L.).
Matsuhira H, Kagami H, Kurata M, Kitazaki K, Matsunaga M, Hamaguchi Y, Hagihara E, Ueda M, Harada M, Muramatsu A, Yui-Kurino R, Taguchi K, Tamagake H, Mikami T, Kubo T., Genetics 192(4), 2012
PMID: 22997236
Matsuhira H, Kagami H, Kurata M, Kitazaki K, Matsunaga M, Hamaguchi Y, Hagihara E, Ueda M, Harada M, Muramatsu A, Yui-Kurino R, Taguchi K, Tamagake H, Mikami T, Kubo T., Genetics 192(4), 2012
PMID: 22997236
Evolutionary reshuffling in the Errantivirus lineage Elbe within the Beta vulgaris genome.
Wollrab C, Heitkam T, Holtgräwe D, Weisshaar B, Minoche AE, Dohm JC, Himmelbauer H, Schmidt T., Plant J 72(4), 2012
PMID: 22804913
Wollrab C, Heitkam T, Holtgräwe D, Weisshaar B, Minoche AE, Dohm JC, Himmelbauer H, Schmidt T., Plant J 72(4), 2012
PMID: 22804913
38 References
Daten bereitgestellt von Europe PubMed Central.
The genome of Theobroma cacao.
Argout X, Salse J, Aury JM, Guiltinan MJ, Droc G, Gouzy J, Allegre M, Chaparro C, Legavre T, Maximova SN, Abrouk M, Murat F, Fouet O, Poulain J, Ruiz M, Roguet Y, Rodier-Goud M, Barbosa-Neto JF, Sabot F, Kudrna D, Ammiraju JS, Schuster SC, Carlson JE, Sallet E, Schiex T, Dievart A, Kramer M, Gelley L, Shi Z, Berard A, Viot C, Boccara M, Risterucci AM, Guignon V, Sabau X, Axtell MJ, Ma Z, Zhang Y, Brown S, Bourge M, Golser W, Song X, Clement D, Rivallan R, Tahi M, Akaza JM, Pitollat B, Gramacho K, D'Hont A, Brunel D, Infante D, Kebe I, Costet P, Wing R, McCombie WR, Guiderdoni E, Quetier F, Panaud O, Wincker P, Bocs S, Lanaud C., Nat. Genet. 43(2), 2010
PMID: 21186351
Argout X, Salse J, Aury JM, Guiltinan MJ, Droc G, Gouzy J, Allegre M, Chaparro C, Legavre T, Maximova SN, Abrouk M, Murat F, Fouet O, Poulain J, Ruiz M, Roguet Y, Rodier-Goud M, Barbosa-Neto JF, Sabot F, Kudrna D, Ammiraju JS, Schuster SC, Carlson JE, Sallet E, Schiex T, Dievart A, Kramer M, Gelley L, Shi Z, Berard A, Viot C, Boccara M, Risterucci AM, Guignon V, Sabau X, Axtell MJ, Ma Z, Zhang Y, Brown S, Bourge M, Golser W, Song X, Clement D, Rivallan R, Tahi M, Akaza JM, Pitollat B, Gramacho K, D'Hont A, Brunel D, Infante D, Kebe I, Costet P, Wing R, McCombie WR, Guiderdoni E, Quetier F, Panaud O, Wincker P, Bocs S, Lanaud C., Nat. Genet. 43(2), 2010
PMID: 21186351
Nuclear DNA content of some important plant species
Arumuganathan, Plant Mol. Biol. Rep. 9(), 1991
Arumuganathan, Plant Mol. Biol. Rep. 9(), 1991
A recent polyploidy superimposed on older large-scale duplications in the Arabidopsis genome.
Blanc G, Hokamp K, Wolfe KH., Genome Res. 13(2), 2003
PMID: 12566392
Blanc G, Hokamp K, Wolfe KH., Genome Res. 13(2), 2003
PMID: 12566392
An anchored framework BAC map of mouse chromosome 11 assembled using multiplex oligonucleotide hybridization.
Cai WW, Reneker J, Chow CW, Vaishnav M, Bradley A., Genomics 54(3), 1998
PMID: 9878241
Cai WW, Reneker J, Chow CW, Vaishnav M, Bradley A., Genomics 54(3), 1998
PMID: 9878241
Comparative sequence analyses indicate that Coffea (Asterids) and Vitis (Rosids) derive from the same paleo-hexaploid ancestral genome.
Cenci A, Combes MC, Lashermes P., Mol. Genet. Genomics 283(5), 2010
PMID: 20361338
Cenci A, Combes MC, Lashermes P., Mol. Genet. Genomics 283(5), 2010
PMID: 20361338
Toward a physical map of the genome of the nematode Caenorhabditis elegans.
Coulson A, Sulston J, Brenner S, Karn J., Proc. Natl. Acad. Sci. U.S.A. 83(20), 1986
PMID: 16593771
Coulson A, Sulston J, Brenner S, Karn J., Proc. Natl. Acad. Sci. U.S.A. 83(20), 1986
PMID: 16593771
Haplotype divergence in Beta vulgaris and microsynteny with sequenced plant genomes.
Dohm JC, Lange C, Reinhardt R, Himmelbauer H., Plant J. 57(1), 2008
PMID: 18764921
Dohm JC, Lange C, Reinhardt R, Himmelbauer H., Plant J. 57(1), 2008
PMID: 18764921
Chromosome-based genomics in the cereals.
Dolezel J, Kubalakova M, Paux E, Bartos J, Feuillet C., Chromosome Res. 15(1), 2007
PMID: 17295126
Dolezel J, Kubalakova M, Paux E, Bartos J, Feuillet C., Chromosome Res. 15(1), 2007
PMID: 17295126
Origin of the ‘Weisse Schlesische Rübe’ (white Silesian beet) and resynthesis of sugar beet
Fischer, Euphytica 41(), 1989
Fischer, Euphytica 41(), 1989
Genome size and the proportion of repeated nucleotide sequence DNA in plants.
Flavell RB, Bennett MD, Smith JB, Smith DB., Biochem. Genet. 12(4), 1974
PMID: 4441361
Flavell RB, Bennett MD, Smith JB, Smith DB., Biochem. Genet. 12(4), 1974
PMID: 4441361
Sugar beet BAC library construction and assembly of a contig spanning Rf1, a restorer-of-fertility gene for Owen cytoplasmic male sterility.
Hagihara E, Matsuhira H, Ueda M, Mikami T, Kubo T., Mol. Genet. Genomics 274(3), 2005
PMID: 16080000
Hagihara E, Matsuhira H, Ueda M, Mikami T, Kubo T., Mol. Genet. Genomics 274(3), 2005
PMID: 16080000
No conserved homoeologous regions found in the sugar beet genome
Hallden, J. Sugar Beet Res. 35(), 1998
Hallden, J. Sugar Beet Res. 35(), 1998
Construction of a 'unigene' cDNA clone set by oligonucleotide fingerprinting allows access to 25 000 potential sugar beet genes.
Herwig R, Schulz B, Weisshaar B, Hennig S, Steinfath M, Drungowski M, Stahl D, Wruck W, Menze A, O'Brien J, Lehrach H, Radelof U., Plant J. 32(5), 2002
PMID: 12472698
Herwig R, Schulz B, Weisshaar B, Hennig S, Steinfath M, Drungowski M, Stahl D, Wruck W, Menze A, O'Brien J, Lehrach H, Radelof U., Plant J. 32(5), 2002
PMID: 12472698
A bacterial artificial chromosome (BAC) library of sugar beet and a physical map of the region encompassing the bolting gene B.
Hohmann U, Jacobs G, Telgmann A, Gaafar RM, Alam S, Jung C., Mol. Genet. Genomics 269(1), 2003
PMID: 12715161
Hohmann U, Jacobs G, Telgmann A, Gaafar RM, Alam S, Jung C., Mol. Genet. Genomics 269(1), 2003
PMID: 12715161
Rapid and efficient construction of yeast artificial chromosome contigs in the mouse genome with interspersed repetitive sequence PCR (IRS-PCR): generation of a 5-cM, > 5 megabase contig on mouse chromosome 1.
Hunter KW, Ontiveros SD, Watson ML, Stanton VP Jr, Gutierrez P, Bhat D, Rochelle J, Graw S, Ton C, Schalling M., Mamm. Genome 5(10), 1994
PMID: 7849394
Hunter KW, Ontiveros SD, Watson ML, Stanton VP Jr, Gutierrez P, Bhat D, Rochelle J, Graw S, Ton C, Schalling M., Mamm. Genome 5(10), 1994
PMID: 7849394
A BAC library of Beta vulgaris L. for the targeted isolation of centromeric DNA and molecular cytogenetics of Beta species.
Jacobs G, Dechyeva D, Wenke T, Weber B, Schmidt T., Genetica 135(2), 2008
PMID: 18386131
Jacobs G, Dechyeva D, Wenke T, Weber B, Schmidt T., Genetica 135(2), 2008
PMID: 18386131
The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro F, Anthouard V, Vico V, Del Fabbro C, Alaux M, Di Gaspero G, Dumas V, Felice N, Paillard S, Juman I, Moroldo M, Scalabrin S, Canaguier A, Le Clainche I, Malacrida G, Durand E, Pesole G, Laucou V, Chatelet P, Merdinoglu D, Delledonne M, Pezzotti M, Lecharny A, Scarpelli C, Artiguenave F, Pe ME, Valle G, Morgante M, Caboche M, Adam-Blondon AF, Weissenbach J, Quetier F, Wincker P; French-Italian Public Consortium for Grapevine Genome Characterization., Nature 449(7161), 2007
PMID: 17721507
Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro F, Anthouard V, Vico V, Del Fabbro C, Alaux M, Di Gaspero G, Dumas V, Felice N, Paillard S, Juman I, Moroldo M, Scalabrin S, Canaguier A, Le Clainche I, Malacrida G, Durand E, Pesole G, Laucou V, Chatelet P, Merdinoglu D, Delledonne M, Pezzotti M, Lecharny A, Scarpelli C, Artiguenave F, Pe ME, Valle G, Morgante M, Caboche M, Adam-Blondon AF, Weissenbach J, Quetier F, Wincker P; French-Italian Public Consortium for Grapevine Genome Characterization., Nature 449(7161), 2007
PMID: 17721507
Contrasting evolutionary dynamics between angiosperm and mammalian genomes.
Kejnovsky E, Leitch IJ, Leitch AR., Trends Ecol. Evol. (Amst.) 24(10), 2009
PMID: 19665255
Kejnovsky E, Leitch IJ, Leitch AR., Trends Ecol. Evol. (Amst.) 24(10), 2009
PMID: 19665255
A first generation physical map of the medaka genome in BACs essential for positional cloning and clone-by-clone based genomic sequencing.
Khorasani MZ, Hennig S, Imre G, Asakawa S, Palczewski S, Berger A, Hori H, Naruse K, Mitani H, Shima A, Lehrach H, Wittbrodt J, Kondoh H, Shimizu N, Himmelbauer H., Mech. Dev. 121(7-8), 2004
PMID: 15210195
Khorasani MZ, Hennig S, Imre G, Asakawa S, Palczewski S, Berger A, Hori H, Naruse K, Mitani H, Shima A, Lehrach H, Wittbrodt J, Kondoh H, Shimizu N, Himmelbauer H., Mech. Dev. 121(7-8), 2004
PMID: 15210195
Circos: an information aesthetic for comparative genomics.
Krzywinski M, Schein J, Birol I, Connors J, Gascoyne R, Horsman D, Jones SJ, Marra MA., Genome Res. 19(9), 2009
PMID: 19541911
Krzywinski M, Schein J, Birol I, Connors J, Gascoyne R, Horsman D, Jones SJ, Marra MA., Genome Res. 19(9), 2009
PMID: 19541911
Construction of a large-insert yeast artificial chromosome library of the mouse genome.
Kusumi K, Smith JS, Segre JA, Koos DS, Lander ES., Mamm. Genome 4(7), 1993
PMID: 8358173
Kusumi K, Smith JS, Segre JA, Koos DS, Lander ES., Mamm. Genome 4(7), 1993
PMID: 8358173
Construction and characterization of a sugar beet (Beta vulgaris) fosmid library.
Lange C, Holtgrawe D, Schulz B, Weisshaar B, Himmelbauer H., Genome 51(11), 2008
PMID: 18956027
Lange C, Holtgrawe D, Schulz B, Weisshaar B, Himmelbauer H., Genome 51(11), 2008
PMID: 18956027
High-throughput identification of genetic markers using representational oligonucleotide microarray analysis.
Lange C, Mittermayr L, Dohm JC, Holtgrawe D, Weisshaar B, Himmelbauer H., Theor. Appl. Genet. 121(3), 2010
PMID: 20379697
Lange C, Mittermayr L, Dohm JC, Holtgrawe D, Weisshaar B, Himmelbauer H., Theor. Appl. Genet. 121(3), 2010
PMID: 20379697
Construction of a sugar beet BAC library from a hybrid with diverse traits
McGrath, Plant Mol. Biol. Rep. 22(), 2004
McGrath, Plant Mol. Biol. Rep. 22(), 2004
Mapping and sequencing complex genomes: let's get physical!
Meyers BC, Scalabrin S, Morgante M., Nat. Rev. Genet. 5(8), 2004
PMID: 15266340
Meyers BC, Scalabrin S, Morgante M., Nat. Rev. Genet. 5(8), 2004
PMID: 15266340
Algorithms and software tools for ordering clone libraries: application to the mapping of the genome of Schizosaccharomyces pombe.
Mott R, Grigoriev A, Maier E, Hoheisel J, Lehrach H., Nucleic Acids Res. 21(8), 1993
PMID: 8493107
Mott R, Grigoriev A, Maier E, Hoheisel J, Lehrach H., Nucleic Acids Res. 21(8), 1993
PMID: 8493107
Sequence-based physical mapping of complex genomes by whole genome profiling.
van Oeveren J, de Ruiter M, Jesse T, van der Poel H, Tang J, Yalcin F, Janssen A, Volpin H, Stormo KE, Bogden R, van Eijk MJ, Prins M., Genome Res. 21(4), 2011
PMID: 21324881
van Oeveren J, de Ruiter M, Jesse T, van der Poel H, Tang J, Yalcin F, Janssen A, Volpin H, Stormo KE, Bogden R, van Eijk MJ, Prins M., Genome Res. 21(4), 2011
PMID: 21324881
A linkage map of sugar beet (Beta vulgaris L.).
Pillen K, Steinrucken G, Wricke G, Herrmann RG, Jung C., Theor. Appl. Genet. 84(1/2), 1992
PMID: IND92056176
Pillen K, Steinrucken G, Wricke G, Herrmann RG, Jung C., Theor. Appl. Genet. 84(1/2), 1992
PMID: IND92056176
Reconstruction of monocotelydoneous proto-chromosomes reveals faster evolution in plants than in animals.
Salse J, Abrouk M, Bolot S, Guilhot N, Courcelle E, Faraut T, Waugh R, Close TJ, Messing J, Feuillet C., Proc. Natl. Acad. Sci. U.S.A. 106(35), 2009
PMID: 19706486
Salse J, Abrouk M, Bolot S, Guilhot N, Courcelle E, Faraut T, Waugh R, Close TJ, Messing J, Feuillet C., Proc. Natl. Acad. Sci. U.S.A. 106(35), 2009
PMID: 19706486
Genome sequence of the palaeopolyploid soybean.
Schmutz J, Cannon SB, Schlueter J, Ma J, Mitros T, Nelson W, Hyten DL, Song Q, Thelen JJ, Cheng J, Xu D, Hellsten U, May GD, Yu Y, Sakurai T, Umezawa T, Bhattacharyya MK, Sandhu D, Valliyodan B, Lindquist E, Peto M, Grant D, Shu S, Goodstein D, Barry K, Futrell-Griggs M, Abernathy B, Du J, Tian Z, Zhu L, Gill N, Joshi T, Libault M, Sethuraman A, Zhang XC, Shinozaki K, Nguyen HT, Wing RA, Cregan P, Specht J, Grimwood J, Rokhsar D, Stacey G, Shoemaker RC, Jackson SA., Nature 463(7278), 2010
PMID: 20075913
Schmutz J, Cannon SB, Schlueter J, Ma J, Mitros T, Nelson W, Hyten DL, Song Q, Thelen JJ, Cheng J, Xu D, Hellsten U, May GD, Yu Y, Sakurai T, Umezawa T, Bhattacharyya MK, Sandhu D, Valliyodan B, Lindquist E, Peto M, Grant D, Shu S, Goodstein D, Barry K, Futrell-Griggs M, Abernathy B, Du J, Tian Z, Zhu L, Gill N, Joshi T, Libault M, Sethuraman A, Zhang XC, Shinozaki K, Nguyen HT, Wing RA, Cregan P, Specht J, Grimwood J, Rokhsar D, Stacey G, Shoemaker RC, Jackson SA., Nature 463(7278), 2010
PMID: 20075913
Analysis of DNA polymorphisms in sugar beet (Beta vulgaris L.) and development of an SNP-based map of expressed genes.
Schneider K, Kulosa D, Soerensen TR, Mohring S, Heine M, Durstewitz G, Polley A, Weber E, Jamsari , Lein J, Hohmann U, Tahiro E, Weisshaar B, Schulz B, Koch G, Jung C, Ganal M., Theor. Appl. Genet. 115(5), 2007
PMID: 17622508
Schneider K, Kulosa D, Soerensen TR, Mohring S, Heine M, Durstewitz G, Polley A, Weber E, Jamsari , Lein J, Hohmann U, Tahiro E, Weisshaar B, Schulz B, Koch G, Jung C, Ganal M., Theor. Appl. Genet. 115(5), 2007
PMID: 17622508
Chromosomal assignment of the nine linkage groups of sugar beet (Beta vulgaris L.) using primary trisomics.
Schondelmaier J, Jung C., Theor. Appl. Genet. 95(4), 1997
PMID: IND20800264
Schondelmaier J, Jung C., Theor. Appl. Genet. 95(4), 1997
PMID: IND20800264
Integration of AFLP markers into a linkage map of sugar beet (Beta vulgaris L.).
Schondelmaier J, Steinrucken G, Jung C., Plant Breed. 115(4), 1996
PMID: IND20559576
Schondelmaier J, Steinrucken G, Jung C., Plant Breed. 115(4), 1996
PMID: IND20559576
Synteny and collinearity in plant genomes.
Tang H, Bowers JE, Wang X, Ming R, Alam M, Paterson AH., Science 320(5875), 2008
PMID: 18436778
Tang H, Bowers JE, Wang X, Ming R, Alam M, Paterson AH., Science 320(5875), 2008
PMID: 18436778
Unraveling ancient hexaploidy through multiply-aligned angiosperm gene maps.
Tang H, Wang X, Bowers JE, Ming R, Alam M, Paterson AH., Genome Res. 18(12), 2008
PMID: 18832442
Tang H, Wang X, Bowers JE, Ming R, Alam M, Paterson AH., Genome Res. 18(12), 2008
PMID: 18832442
The genome of black cottonwood, Populus trichocarpa (Torr. & Gray).
Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapman J, Chen GL, Cooper D, Coutinho PM, Couturier J, Covert S, Cronk Q, Cunningham R, Davis J, Degroeve S, Dejardin A, Depamphilis C, Detter J, Dirks B, Dubchak I, Duplessis S, Ehlting J, Ellis B, Gendler K, Goodstein D, Gribskov M, Grimwood J, Groover A, Gunter L, Hamberger B, Heinze B, Helariutta Y, Henrissat B, Holligan D, Holt R, Huang W, Islam-Faridi N, Jones S, Jones-Rhoades M, Jorgensen R, Joshi C, Kangasjarvi J, Karlsson J, Kelleher C, Kirkpatrick R, Kirst M, Kohler A, Kalluri U, Larimer F, Leebens-Mack J, Leple JC, Locascio P, Lou Y, Lucas S, Martin F, Montanini B, Napoli C, Nelson DR, Nelson C, Nieminen K, Nilsson O, Pereda V, Peter G, Philippe R, Pilate G, Poliakov A, Razumovskaya J, Richardson P, Rinaldi C, Ritland K, Rouze P, Ryaboy D, Schmutz J, Schrader J, Segerman B, Shin H, Siddiqui A, Sterky F, Terry A, Tsai CJ, Uberbacher E, Unneberg P, Vahala J, Wall K, Wessler S, Yang G, Yin T, Douglas C, Marra M, Sandberg G, Van de Peer Y, Rokhsar D., Science 313(5793), 2006
PMID: 16973872
Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapman J, Chen GL, Cooper D, Coutinho PM, Couturier J, Covert S, Cronk Q, Cunningham R, Davis J, Degroeve S, Dejardin A, Depamphilis C, Detter J, Dirks B, Dubchak I, Duplessis S, Ehlting J, Ellis B, Gendler K, Goodstein D, Gribskov M, Grimwood J, Groover A, Gunter L, Hamberger B, Heinze B, Helariutta Y, Henrissat B, Holligan D, Holt R, Huang W, Islam-Faridi N, Jones S, Jones-Rhoades M, Jorgensen R, Joshi C, Kangasjarvi J, Karlsson J, Kelleher C, Kirkpatrick R, Kirst M, Kohler A, Kalluri U, Larimer F, Leebens-Mack J, Leple JC, Locascio P, Lou Y, Lucas S, Martin F, Montanini B, Napoli C, Nelson DR, Nelson C, Nieminen K, Nilsson O, Pereda V, Peter G, Philippe R, Pilate G, Poliakov A, Razumovskaya J, Richardson P, Rinaldi C, Ritland K, Rouze P, Ryaboy D, Schmutz J, Schrader J, Segerman B, Shin H, Siddiqui A, Sterky F, Terry A, Tsai CJ, Uberbacher E, Unneberg P, Vahala J, Wall K, Wessler S, Yang G, Yin T, Douglas C, Marra M, Sandberg G, Van de Peer Y, Rokhsar D., Science 313(5793), 2006
PMID: 16973872
More genomic resources for less-studied crops.
Varshney RK, Glaszmann JC, Leung H, Ribaut JM., Trends Biotechnol. 28(9), 2010
PMID: 20692061
Varshney RK, Glaszmann JC, Leung H, Ribaut JM., Trends Biotechnol. 28(9), 2010
PMID: 20692061
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