Mapping-by-sequencing reveals genomic regions associated with seed quality parameters in <em>Brassica napus</em>

Schilbert H, Pucker B, Ries D, Viehöver P, Micic Z, Dreyer F, Beckmann K, Wittkop B, Weisshaar B, Holtgräwe D (2022)
Genes 13(7): 1131.

Zeitschriftenaufsatz | Veröffentlicht | Englisch
 
Download
OA 3.22 MB
Autor*in
Schilbert, HannaUniBi; Pucker, Boas; Ries, David; Viehöver, PriscaUniBi; Micic, Zeljko; Dreyer, Felix; Beckmann, Katrin; Wittkop, Benjamin; Weisshaar, BerndUniBi ; Holtgräwe, DanielaUniBi
Abstract / Bemerkung
Rapeseed (Brassica napusL.) is an important oil crop and harbours the potential to serve as a highly productive source of protein. This protein exhibits an excellent amino acid composition and has a high nutritional value for humans. Seed protein content (SPC) and seed oil content (SOC) are two complex quantitative and polygenic traits which are negatively correlated and assumed to be controlled by additive and epistatic effects. A reduction of seed glucosinolate (GSL) content is desired as GSLs cause a stringent and bitter taste. The goal here was the identification of genomic intervals relevant for seed GSL content and SPC/SOC. Mapping-by-sequencing (MBS) revealed 30 and 15 new and known genomic intervals associated with seed GSL content and SPC/SOC, respectively. Within these intervals we identified known but also so far unknown putatively causal genes and sequence variants. A 4 bp insertion in theMYB28homolog on C09 shows a significant correlation with a reduction in seed GSL content. This study provides insights into the genetic architecture and potential mechanisms underlying seed quality traits, which will enhance future breeding approaches inB. napus.
Stichworte
breeding; bulk segregant analysis; delta allele frequencies; glucosinolates; gene expression; interval detection; MYB; rapeseed; seed protein content; seed oil content
Erscheinungsjahr
2022
Zeitschriftentitel
Genes
Band
13
Ausgabe
7
Art.-Nr.
1131
eISSN
2073-4425
Finanzierungs-Informationen
Open-Access-Publikationskosten wurden durch die Universität Bielefeld gefördert.
Page URI
https://pub.uni-bielefeld.de/record/2963558

Zitieren

Schilbert H, Pucker B, Ries D, et al. Mapping-by-sequencing reveals genomic regions associated with seed quality parameters in <em>Brassica napus</em>. Genes. 2022;13(7): 1131.
Schilbert, H., Pucker, B., Ries, D., Viehöver, P., Micic, Z., Dreyer, F., Beckmann, K., et al. (2022). Mapping-by-sequencing reveals genomic regions associated with seed quality parameters in <em>Brassica napus</em>. Genes, 13(7), 1131. https://doi.org/10.3390/genes13071131
Schilbert, Hanna, Pucker, Boas, Ries, David, Viehöver, Prisca, Micic, Zeljko, Dreyer, Felix, Beckmann, Katrin, Wittkop, Benjamin, Weisshaar, Bernd, and Holtgräwe, Daniela. 2022. “Mapping-by-sequencing reveals genomic regions associated with seed quality parameters in <em>Brassica napus</em>”. Genes 13 (7): 1131.
Schilbert, H., Pucker, B., Ries, D., Viehöver, P., Micic, Z., Dreyer, F., Beckmann, K., Wittkop, B., Weisshaar, B., and Holtgräwe, D. (2022). Mapping-by-sequencing reveals genomic regions associated with seed quality parameters in <em>Brassica napus</em>. Genes 13:1131.
Schilbert, H., et al., 2022. Mapping-by-sequencing reveals genomic regions associated with seed quality parameters in <em>Brassica napus</em>. Genes, 13(7): 1131.
H. Schilbert, et al., “Mapping-by-sequencing reveals genomic regions associated with seed quality parameters in <em>Brassica napus</em>”, Genes, vol. 13, 2022, : 1131.
Schilbert, H., Pucker, B., Ries, D., Viehöver, P., Micic, Z., Dreyer, F., Beckmann, K., Wittkop, B., Weisshaar, B., Holtgräwe, D.: Mapping-by-sequencing reveals genomic regions associated with seed quality parameters in <em>Brassica napus</em>. Genes. 13, : 1131 (2022).
Schilbert, Hanna, Pucker, Boas, Ries, David, Viehöver, Prisca, Micic, Zeljko, Dreyer, Felix, Beckmann, Katrin, Wittkop, Benjamin, Weisshaar, Bernd, and Holtgräwe, Daniela. “Mapping-by-sequencing reveals genomic regions associated with seed quality parameters in <em>Brassica napus</em>”. Genes 13.7 (2022): 1131.
Alle Dateien verfügbar unter der/den folgenden Lizenz(en):
Creative Commons Namensnennung 4.0 International Public License (CC-BY 4.0):
Volltext(e)
Access Level
OA Open Access
Zuletzt Hochgeladen
2022-07-07T07:02:22Z
MD5 Prüfsumme
99ed87a53cceb901ccb0f6068fccb2fe


Link(s) zu Volltext(en)
Access Level
OA Open Access

Zitationen in Europe PMC

Daten bereitgestellt von Europe PubMed Central.

References

Daten bereitgestellt von Europe PubMed Central.

Material in PUB:
Zitiert
Supplementary material related to MBS analysis of seed quality parameters in Brassica napus
Pucker B, Schilbert H, Viehöver P, Weisshaar B, Holtgräwe D (2022)
Bielefeld University.
Dissertation, die diesen PUB Eintrag enthält
Export

Markieren/ Markierung löschen
Markierte Publikationen

Open Data PUB

Web of Science

Dieser Datensatz im Web of Science®
Quellen

PMID: 35885914
PubMed | Europe PMC

Preprint: 10.1101/2022.06.01.494149

Suchen in

Google Scholar